Wall clock time and date at job start Mon Mar 30 2020 07:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46812 * 2 1 4 4 N 1.46899 * 109.46852 * 119.99798 * 2 1 3 5 5 C 1.52995 * 109.46772 * 239.99970 * 2 1 3 6 6 C 1.50706 * 109.46738 * 174.99876 * 5 2 1 7 7 C 1.38268 * 119.94321 * 90.00357 * 6 5 2 8 8 C 1.38139 * 120.05510 * 179.97438 * 7 6 5 9 9 C 1.38733 * 119.94507 * 359.97438 * 8 7 6 10 10 O 1.35905 * 120.05258 * 179.97438 * 9 8 7 11 11 C 1.42901 * 116.99604 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47046 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47242 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47188 * 179.97438 * 13 12 11 15 15 H 1.07992 * 119.99812 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99666 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00715 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99811 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47055 * 89.99630 * 18 16 14 20 20 H 1.48502 * 109.47393 * 209.99845 * 18 16 14 21 21 H 1.48495 * 109.46960 * 329.99808 * 18 16 14 22 22 C 1.38723 * 119.88799 * 0.25807 * 9 8 7 23 23 C 1.38145 * 119.94323 * 359.49123 * 22 9 8 24 24 H 1.08993 * 109.47097 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47066 * 300.00448 * 1 2 3 26 26 H 1.08997 * 109.46986 * 59.99875 * 1 2 3 27 27 H 1.00896 * 111.00112 * 60.00235 * 4 2 1 28 28 H 1.00907 * 110.99538 * 183.95394 * 4 2 1 29 29 H 1.09001 * 109.47459 * 55.00187 * 5 2 1 30 30 H 1.08994 * 109.47315 * 294.99758 * 5 2 1 31 31 H 1.08008 * 119.97007 * 359.94743 * 7 6 5 32 32 H 1.08001 * 120.02451 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47144 * 300.00205 * 11 10 9 34 34 H 1.08998 * 109.47043 * 59.99803 * 11 10 9 35 35 H 1.08999 * 109.47084 * 299.99957 * 12 11 10 36 36 H 1.08996 * 109.47090 * 59.99784 * 12 11 10 37 37 H 1.08999 * 109.47046 * 299.99980 * 13 12 11 38 38 H 1.09006 * 109.46791 * 59.99742 * 13 12 11 39 39 H 0.96998 * 120.00241 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.02769 * 179.72249 * 22 9 8 41 41 H 1.08006 * 119.97076 * 180.25587 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0399 -0.7212 -1.2492 6 6 3.5419 -0.6149 -1.3127 7 6 4.3282 -1.5824 -0.7149 8 6 5.7051 -1.4875 -0.7722 9 6 6.2989 -0.4205 -1.4306 10 8 7.6534 -0.3246 -1.4878 11 6 8.1953 0.8009 -2.1818 12 6 9.7234 0.7376 -2.1413 13 6 10.3037 1.9429 -2.8837 14 6 11.8089 1.8809 -2.8433 15 1 12.3022 1.0633 -2.3389 16 6 12.5560 2.8680 -3.4503 17 7 11.9553 3.8634 -4.0650 18 14 14.4218 2.7907 -3.4007 19 1 14.9175 2.0361 -4.5798 20 1 14.9752 4.1686 -3.4265 21 1 14.8560 2.1061 -2.1566 22 6 5.5078 0.5515 -2.0254 23 6 4.1313 0.4493 -1.9698 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6961 -1.6479 1.2228 28 1 3.0262 -0.6500 1.2559 29 1 1.6053 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2056 31 1 3.8654 -2.4129 -0.2024 32 1 6.3188 -2.2433 -0.3047 33 1 7.8587 0.7851 -3.2184 34 1 7.8565 1.7200 -1.7038 35 1 10.0604 0.7531 -1.1048 36 1 10.0618 -0.1816 -2.6195 37 1 9.9668 1.9278 -3.9203 38 1 9.9652 2.8619 -2.4050 39 1 12.4810 4.5580 -4.4917 40 1 5.9677 1.3855 -2.5347 41 1 3.5149 1.2036 -2.4363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:44 Heat of formation + Delta-G solvation = -47.427360 kcal Electronic energy + Delta-G solvation = -18758.356489 eV Core-core repulsion = 15830.052256 eV Total energy + Delta-G solvation = -2928.304233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16420 -38.25686 -36.20551 -34.04791 -31.93805 -31.08747 -30.80224 -29.34240 -27.23448 -25.92005 -23.76850 -22.54063 -21.50869 -20.62878 -20.22157 -18.00241 -16.63181 -16.30957 -15.81868 -15.80884 -15.48625 -14.68767 -14.50528 -14.34971 -14.18257 -13.52343 -13.46585 -13.33762 -12.70812 -12.38101 -12.25430 -12.09774 -11.93517 -11.78083 -11.40434 -11.08697 -11.03687 -11.01080 -10.62554 -10.59875 -10.43838 -9.79281 -9.56078 -9.18965 -9.10763 -8.97250 -8.41100 -7.99434 -6.06187 -4.08933 1.28111 1.38045 3.29591 3.35624 3.38761 3.48912 3.68551 4.31379 4.42438 4.49862 4.68530 4.81073 4.86243 5.03997 5.12658 5.18743 5.29049 5.30010 5.41855 5.50155 5.51636 5.55578 5.61446 5.66031 5.84394 5.87684 5.92731 5.99740 6.23762 6.39293 6.50545 6.51918 6.57111 6.82042 6.90633 6.95580 7.19569 7.56374 7.63891 7.68101 7.92226 8.33949 8.97282 9.55582 11.05323 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.052013 B = 0.002688 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.196801 B =10414.174332 C =10681.210763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.081 0.919 4 N -0.844 5.844 5 C -0.108 4.108 6 C -0.136 4.136 7 C -0.085 4.085 8 C -0.155 4.155 9 C 0.139 3.861 10 O -0.316 6.316 11 C 0.059 3.941 12 C -0.108 4.108 13 C 0.025 3.975 14 C -0.521 4.521 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.206 4.206 23 C -0.074 4.074 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.336 0.664 28 H 0.345 0.655 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.426 -9.322 6.087 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.099 0.901 4 N -0.374 5.374 5 C -0.147 4.147 6 C -0.136 4.136 7 C -0.103 4.103 8 C -0.174 4.174 9 C 0.093 3.907 10 O -0.229 6.229 11 C -0.016 4.016 12 C -0.146 4.146 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.224 4.224 23 C -0.092 4.092 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.148 0.852 28 H 0.159 0.841 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.149 0.851 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.646 -8.720 6.481 24.219 hybrid contribution 1.526 -0.355 -0.977 1.846 sum -20.120 -9.075 5.504 22.748 Atomic orbital electron populations 1.21809 0.94491 1.01869 1.02061 1.21460 0.95049 0.98391 0.87302 0.90120 1.58980 1.16994 1.20930 1.40468 1.21370 0.91697 1.01448 1.00221 1.19652 0.95227 0.96654 1.02107 1.20741 0.92543 0.98149 0.98859 1.20430 0.94526 0.98718 1.03695 1.19158 0.83392 0.94010 0.94171 1.86129 1.16855 1.47657 1.72303 1.23215 0.96864 0.86220 0.95270 1.21723 0.88795 1.02049 1.02030 1.19048 0.95698 0.91345 0.95163 1.21179 0.91277 1.08620 1.34857 0.92437 1.25028 0.98847 0.95351 0.95254 1.69958 1.35560 1.11994 1.35972 0.86542 0.85401 0.77268 0.78508 1.20598 1.21169 1.19795 1.21389 0.94579 1.01006 1.05466 1.20797 0.93914 0.97051 0.97462 0.92879 0.91873 0.92251 0.85230 0.84101 0.90787 0.91387 0.86131 0.85306 0.92364 0.92320 0.92168 0.92194 0.96335 0.96302 0.92893 0.85080 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.49 37.16 0.35 -0.60 16 2 C 0.09 0.70 3.40 -67.71 -0.23 0.47 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 N -0.84 -6.78 9.12 -4.67 -0.04 -6.82 16 5 C -0.11 -0.84 4.99 -27.88 -0.14 -0.98 16 6 C -0.14 -1.38 4.73 -104.60 -0.49 -1.88 16 7 C -0.08 -0.87 8.38 -39.61 -0.33 -1.20 16 8 C -0.15 -1.95 9.99 -39.44 -0.39 -2.35 16 9 C 0.14 2.07 6.69 -39.22 -0.26 1.81 16 10 O -0.32 -5.45 10.14 -19.44 -0.20 -5.65 16 11 C 0.06 1.04 4.74 37.16 0.18 1.21 16 12 C -0.11 -2.26 5.52 -26.73 -0.15 -2.41 16 13 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 18 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.21 -2.79 9.04 -39.44 -0.36 -3.15 16 23 C -0.07 -0.85 9.69 -39.61 -0.38 -1.23 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.34 2.20 9.00 -39.29 -0.35 1.85 16 28 H 0.35 2.97 7.32 -39.29 -0.29 2.69 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 34 H 0.06 0.99 7.65 -51.93 -0.40 0.60 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.13 1.75 6.30 -52.49 -0.33 1.42 16 41 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -30.05 339.07 -8.97 -39.02 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.80 Total: 1.04 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.76 Total: -23.30 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.69 Total: -32.78 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.20 Total: -5.65 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.05 -8.97 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.404 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds