Wall clock time and date at job start Mon Mar 30 2020 07:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46812 * 2 1 4 4 N 1.46899 * 109.46852 * 119.99798 * 2 1 3 5 5 C 1.52995 * 109.46772 * 239.99970 * 2 1 3 6 6 C 1.50706 * 109.46738 * 174.99876 * 5 2 1 7 7 C 1.38268 * 119.94321 * 90.00357 * 6 5 2 8 8 C 1.38139 * 120.05510 * 179.97438 * 7 6 5 9 9 C 1.38733 * 119.94507 * 359.97438 * 8 7 6 10 10 O 1.35905 * 120.05258 * 179.97438 * 9 8 7 11 11 C 1.42901 * 116.99604 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47046 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47242 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47188 * 179.97438 * 13 12 11 15 15 H 1.07992 * 119.99812 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99666 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00715 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99811 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47055 * 89.99630 * 18 16 14 20 20 H 1.48502 * 109.47393 * 209.99845 * 18 16 14 21 21 H 1.48495 * 109.46960 * 329.99808 * 18 16 14 22 22 C 1.38723 * 119.88799 * 0.25807 * 9 8 7 23 23 C 1.38145 * 119.94323 * 359.49123 * 22 9 8 24 24 H 1.08993 * 109.47097 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47066 * 300.00448 * 1 2 3 26 26 H 1.08997 * 109.46986 * 59.99875 * 1 2 3 27 27 H 1.00896 * 111.00112 * 60.00235 * 4 2 1 28 28 H 1.00907 * 110.99538 * 183.95394 * 4 2 1 29 29 H 1.09001 * 109.47459 * 55.00187 * 5 2 1 30 30 H 1.08994 * 109.47315 * 294.99758 * 5 2 1 31 31 H 1.08008 * 119.97007 * 359.94743 * 7 6 5 32 32 H 1.08001 * 120.02451 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47144 * 300.00205 * 11 10 9 34 34 H 1.08998 * 109.47043 * 59.99803 * 11 10 9 35 35 H 1.08999 * 109.47084 * 299.99957 * 12 11 10 36 36 H 1.08996 * 109.47090 * 59.99784 * 12 11 10 37 37 H 1.08999 * 109.47046 * 299.99980 * 13 12 11 38 38 H 1.09006 * 109.46791 * 59.99742 * 13 12 11 39 39 H 0.96998 * 120.00241 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.02769 * 179.72249 * 22 9 8 41 41 H 1.08006 * 119.97076 * 180.25587 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0399 -0.7212 -1.2492 6 6 3.5419 -0.6149 -1.3127 7 6 4.3282 -1.5824 -0.7149 8 6 5.7051 -1.4875 -0.7722 9 6 6.2989 -0.4205 -1.4306 10 8 7.6534 -0.3246 -1.4878 11 6 8.1953 0.8009 -2.1818 12 6 9.7234 0.7376 -2.1413 13 6 10.3037 1.9429 -2.8837 14 6 11.8089 1.8809 -2.8433 15 1 12.3022 1.0633 -2.3389 16 6 12.5560 2.8680 -3.4503 17 7 11.9553 3.8634 -4.0650 18 14 14.4218 2.7907 -3.4007 19 1 14.9175 2.0361 -4.5798 20 1 14.9752 4.1686 -3.4265 21 1 14.8560 2.1061 -2.1566 22 6 5.5078 0.5515 -2.0254 23 6 4.1313 0.4493 -1.9698 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6961 -1.6479 1.2228 28 1 3.0262 -0.6500 1.2559 29 1 1.6053 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2056 31 1 3.8654 -2.4129 -0.2024 32 1 6.3188 -2.2433 -0.3047 33 1 7.8587 0.7851 -3.2184 34 1 7.8565 1.7200 -1.7038 35 1 10.0604 0.7531 -1.1048 36 1 10.0618 -0.1816 -2.6195 37 1 9.9668 1.9278 -3.9203 38 1 9.9652 2.8619 -2.4050 39 1 12.4810 4.5580 -4.4917 40 1 5.9677 1.3855 -2.5347 41 1 3.5149 1.2036 -2.4363 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:43 Heat of formation + Delta-G solvation = -64.979963 kcal Electronic energy + Delta-G solvation = -18759.117627 eV Core-core repulsion = 15830.052256 eV Total energy + Delta-G solvation = -2929.065371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20279 -39.25910 -37.03513 -35.94693 -33.75637 -32.10826 -31.73598 -29.97201 -28.92817 -26.86267 -25.38528 -23.71913 -22.51759 -21.88182 -21.32829 -19.19001 -18.48362 -17.25081 -17.19484 -16.80479 -16.52978 -16.35604 -15.47866 -15.18375 -14.98080 -14.91256 -14.67398 -14.38380 -14.13660 -13.70691 -13.48418 -13.20678 -12.87962 -12.81630 -12.66387 -12.56492 -12.38332 -12.18078 -11.97747 -11.74572 -11.68566 -11.55002 -11.46849 -11.26802 -10.59090 -9.99764 -9.65344 -8.98328 -8.24132 -6.35286 0.35135 0.42037 1.39762 1.40982 1.52351 2.21654 2.41830 2.74629 3.09647 3.72424 3.79695 3.82433 3.93879 4.00191 4.06869 4.17849 4.35928 4.38716 4.41233 4.42856 4.56980 4.60597 4.78470 4.79511 4.89121 5.00268 5.02016 5.04945 5.08050 5.26409 5.31508 5.39316 5.42611 5.45142 5.62321 5.64009 5.77879 5.85291 6.17606 6.31315 6.45635 6.64191 6.80034 7.34104 8.87952 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.052013 B = 0.002688 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.196801 B =10414.174332 C =10681.210763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.092 3.908 3 H 0.066 0.934 4 N -0.851 5.851 5 C -0.102 4.102 6 C -0.126 4.126 7 C -0.077 4.077 8 C -0.161 4.161 9 C 0.103 3.897 10 O -0.332 6.332 11 C 0.073 3.927 12 C -0.096 4.096 13 C 0.029 3.971 14 C -0.545 4.545 15 H 0.061 0.939 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.264 1.264 22 C -0.219 4.219 23 C -0.081 4.081 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.345 0.655 28 H 0.341 0.659 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.059 0.941 37 H -0.001 1.001 38 H -0.001 1.001 39 H 0.265 0.735 40 H 0.124 0.876 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.627 -10.594 6.611 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 H 0.084 0.916 4 N -0.382 5.382 5 C -0.141 4.141 6 C -0.126 4.126 7 C -0.095 4.095 8 C -0.180 4.180 9 C 0.058 3.942 10 O -0.247 6.247 11 C -0.002 4.002 12 C -0.134 4.134 13 C -0.008 4.008 14 C -0.583 4.583 15 H 0.079 0.921 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.238 4.238 23 C -0.099 4.099 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.159 0.841 28 H 0.154 0.846 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.169 0.831 32 H 0.154 0.846 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.074 0.926 40 H 0.142 0.858 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.872 -10.012 7.014 25.934 hybrid contribution 1.743 0.012 -1.107 2.065 sum -21.129 -9.999 5.907 24.110 Atomic orbital electron populations 1.21777 0.93406 1.02503 1.02178 1.21423 0.95836 0.97580 0.87156 0.91587 1.58969 1.16720 1.21772 1.40711 1.21385 0.89614 1.02531 1.00591 1.19996 0.96749 0.95580 1.00284 1.21065 0.91521 0.98825 0.98109 1.20673 0.95727 0.98202 1.03375 1.19471 0.82337 0.95822 0.96571 1.86042 1.18682 1.47167 1.72780 1.22834 0.94718 0.86908 0.95749 1.21433 0.91116 0.99766 1.01076 1.18911 0.95044 0.92503 0.94387 1.21622 0.92783 1.08910 1.35020 0.92108 1.25980 1.04261 0.94851 0.94681 1.70081 1.37632 1.12754 1.36719 0.85410 0.78885 0.77556 0.78990 1.19681 1.20581 1.18810 1.21460 0.95655 1.00791 1.05879 1.21070 0.93169 0.98019 0.97625 0.91964 0.92612 0.91347 0.84128 0.84561 0.89870 0.89861 0.83120 0.84636 0.92069 0.92056 0.92238 0.92217 0.98260 0.98249 0.92606 0.85784 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.49 71.98 0.68 -0.81 16 2 C 0.09 1.21 3.40 44.92 0.15 1.36 16 3 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 4 N -0.85 -11.72 9.12 -168.68 -1.54 -13.26 16 5 C -0.10 -1.26 4.99 29.85 0.15 -1.11 16 6 C -0.13 -2.26 4.73 -19.85 -0.09 -2.36 16 7 C -0.08 -1.41 8.38 22.25 0.19 -1.22 16 8 C -0.16 -3.90 9.99 22.36 0.22 -3.68 16 9 C 0.10 3.08 6.69 22.50 0.15 3.23 16 10 O -0.33 -11.67 10.14 -92.48 -0.94 -12.61 16 11 C 0.07 2.65 4.74 71.98 0.34 2.99 16 12 C -0.10 -4.12 5.52 30.59 0.17 -3.95 16 13 C 0.03 1.51 4.97 29.85 0.15 1.66 16 14 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 15 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 16 C 0.00 0.02 5.46 84.65 0.46 0.48 16 17 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 18 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 C -0.22 -5.97 9.04 22.36 0.20 -5.77 16 23 C -0.08 -1.74 9.69 22.25 0.22 -1.53 16 24 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.35 3.54 9.00 -89.70 -0.81 2.73 16 28 H 0.34 5.17 7.32 -89.69 -0.66 4.51 16 29 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.06 2.15 7.67 -2.39 -0.02 2.14 16 34 H 0.06 2.16 7.65 -2.39 -0.02 2.14 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.12 3.44 6.30 -2.91 -0.02 3.42 16 41 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -64.88 339.07 2.60 -62.27 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -0.46 Total: 15.18 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 3.22 Total: -41.72 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -1.25 Total: -69.44 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.94 Total: -12.61 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -64.88 2.60 -62.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.708 kcal (2) G-P(sol) polarization free energy of solvation -64.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds