Wall clock time and date at job start Mon Mar 30 2020 07:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 5 5 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 6 6 C 1.50696 * 109.47344 * 184.99683 * 5 2 1 7 7 C 1.38163 * 120.02995 * 264.72302 * 6 5 2 8 8 C 1.38241 * 120.05697 * 179.77218 * 7 6 5 9 9 C 1.38292 * 120.10943 * 0.49762 * 8 7 6 10 10 C 1.38121 * 120.05608 * 359.75711 * 9 8 7 11 11 C 1.38714 * 120.02507 * 84.99751 * 6 5 2 12 12 O 1.35898 * 120.05998 * 0.02562 * 11 6 5 13 13 C 1.42900 * 117.00245 * 180.02562 * 12 11 6 14 14 C 1.53002 * 109.46948 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46646 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46836 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99894 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99735 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00203 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99661 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47366 * 59.99979 * 20 18 16 22 22 H 1.48505 * 109.47057 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46928 * 299.99555 * 20 18 16 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.00898 * 111.00245 * 300.00105 * 4 2 1 28 28 H 1.00904 * 111.00313 * 63.95922 * 4 2 1 29 29 H 1.09008 * 109.46873 * 304.99791 * 5 2 1 30 30 H 1.08997 * 109.47047 * 64.99480 * 5 2 1 31 31 H 1.07998 * 119.96893 * 0.02562 * 7 6 5 32 32 H 1.07999 * 119.94741 * 180.25738 * 8 7 6 33 33 H 1.08003 * 119.96786 * 179.77082 * 9 8 7 34 34 H 1.08002 * 120.02532 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.46815 * 299.99704 * 13 12 11 36 36 H 1.09000 * 109.47452 * 59.99469 * 13 12 11 37 37 H 1.09000 * 109.46970 * 299.99424 * 14 13 12 38 38 H 1.08997 * 109.47101 * 59.99920 * 14 13 12 39 39 H 1.09000 * 109.46941 * 299.99411 * 15 14 13 40 40 H 1.08993 * 109.47784 * 59.99725 * 15 14 13 41 41 H 0.96997 * 119.99579 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0400 -0.7213 1.2492 6 6 3.5419 -0.6150 1.3127 7 6 4.3290 -1.6343 0.8122 8 6 5.7068 -1.5353 0.8658 9 6 6.3008 -0.4210 1.4297 10 6 5.5184 0.5983 1.9362 11 6 4.1353 0.5037 1.8788 12 8 3.3634 1.5049 2.3774 13 6 4.0427 2.6267 2.9450 14 6 3.0160 3.6424 3.4500 15 6 3.7434 4.8438 4.0572 16 6 2.7322 5.8446 4.5541 17 1 1.6764 5.6441 4.4472 18 6 3.1550 7.0163 5.1453 19 7 4.4407 7.2603 5.2759 20 14 1.9015 8.2565 5.7619 21 1 1.0445 7.6221 6.7955 22 1 2.6075 9.4226 6.3511 23 1 1.0563 8.7111 4.6287 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6960 -1.6480 -1.2227 28 1 1.7502 -0.1990 -2.0373 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.8674 -2.5073 0.3749 32 1 6.3203 -2.3313 0.4703 33 1 7.3774 -0.3477 1.4737 34 1 5.9828 1.4682 2.3768 35 1 4.6627 2.2930 3.7770 36 1 4.6722 3.0921 2.1865 37 1 2.3956 3.9762 2.6183 38 1 2.3869 3.1767 4.2086 39 1 4.3641 4.5104 4.8888 40 1 4.3722 5.3094 3.2984 41 1 4.7380 8.0844 5.6921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:46 Heat of formation + Delta-G solvation = -44.645421 kcal Electronic energy + Delta-G solvation = -19400.074789 eV Core-core repulsion = 16471.891190 eV Total energy + Delta-G solvation = -2928.183599 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.05113 -37.47142 -36.44016 -34.00894 -32.03599 -31.49938 -29.74473 -28.92302 -27.00791 -26.29363 -23.70138 -21.85051 -21.65224 -20.59441 -19.97059 -17.70287 -16.43530 -16.38836 -15.72564 -15.61910 -15.32646 -14.62826 -14.46193 -14.13536 -13.78015 -13.40412 -13.23108 -13.09258 -12.52780 -12.25548 -12.14014 -12.08672 -11.75544 -11.57766 -11.19447 -11.01161 -10.89738 -10.85186 -10.61888 -10.56446 -10.30558 -9.74286 -9.52488 -9.17426 -8.77843 -8.63560 -8.38602 -7.85430 -6.03868 -4.06605 1.52164 1.66676 3.32213 3.36395 3.38705 3.62172 3.94067 4.44192 4.46383 4.79443 4.94555 4.99666 5.12198 5.23727 5.30675 5.32219 5.40445 5.51081 5.58027 5.61342 5.68812 5.76097 5.79192 5.93034 5.96591 6.01565 6.13923 6.25878 6.55835 6.56739 6.59617 6.67507 6.72458 6.99103 7.04013 7.08854 7.35196 7.59669 7.71828 7.78091 7.94638 8.36590 8.99410 9.57664 11.07632 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.003921 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.545802 B = 7138.994115 C = 8198.909150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.092 3.908 3 H 0.085 0.915 4 N -0.839 5.839 5 C -0.062 4.062 6 C -0.104 4.104 7 C -0.063 4.063 8 C -0.168 4.168 9 C -0.087 4.087 10 C -0.211 4.211 11 C 0.138 3.862 12 O -0.315 6.315 13 C 0.059 3.941 14 C -0.107 4.107 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.334 0.666 28 H 0.338 0.662 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 -18.403 -10.835 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.020 4.020 3 H 0.103 0.897 4 N -0.368 5.368 5 C -0.099 4.099 6 C -0.105 4.105 7 C -0.081 4.081 8 C -0.187 4.187 9 C -0.105 4.105 10 C -0.230 4.230 11 C 0.092 3.908 12 O -0.228 6.228 13 C -0.015 4.015 14 C -0.144 4.144 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.399 -18.087 -10.448 20.935 hybrid contribution -1.278 0.800 0.148 1.515 sum -2.677 -17.287 -10.301 20.301 Atomic orbital electron populations 1.22633 0.97814 1.01587 1.02535 1.21403 0.91511 0.98973 0.90069 0.89654 1.58878 1.67526 1.06038 1.04344 1.20432 0.91455 1.00242 0.97811 1.18982 0.95611 0.93356 1.02550 1.20674 0.93075 0.97484 0.96915 1.20923 0.94840 0.98934 1.03967 1.20869 0.99316 0.93312 0.96974 1.21305 0.92891 1.01697 1.07128 1.18945 0.89635 0.88705 0.93545 1.86085 1.35848 1.28163 1.72719 1.23161 0.96937 0.84768 0.96642 1.21700 0.97436 0.95158 1.00150 1.19040 0.95799 0.90650 0.95755 1.21149 0.93026 1.02939 1.38876 0.92538 1.25017 0.95252 0.98184 0.95934 1.69951 1.13635 1.25690 1.44184 0.86618 0.81336 0.80662 0.79160 1.20177 1.21247 1.20189 0.91662 0.92841 0.92962 0.85432 0.84983 0.90177 0.91739 0.86199 0.86617 0.86394 0.85476 0.92525 0.92510 0.92322 0.92297 0.96343 0.96349 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 9.48 37.16 0.35 -1.38 16 2 C 0.09 1.00 3.35 -67.71 -0.23 0.78 16 3 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 4 N -0.84 -7.85 8.84 -4.66 -0.04 -7.89 16 5 C -0.06 -0.73 4.72 -27.88 -0.13 -0.86 16 6 C -0.10 -1.42 4.90 -104.48 -0.51 -1.93 16 7 C -0.06 -0.76 9.55 -39.61 -0.38 -1.14 16 8 C -0.17 -2.00 10.04 -39.56 -0.40 -2.39 16 9 C -0.09 -1.11 10.04 -39.60 -0.40 -1.51 16 10 C -0.21 -3.13 9.04 -39.43 -0.36 -3.48 16 11 C 0.14 2.17 6.66 -39.22 -0.26 1.90 16 12 O -0.31 -5.43 9.27 -19.42 -0.18 -5.61 16 13 C 0.06 1.07 4.74 37.16 0.18 1.25 16 14 C -0.11 -2.24 5.52 -26.73 -0.15 -2.38 16 15 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.33 2.54 9.00 -39.29 -0.35 2.19 16 28 H 0.34 2.77 9.07 -39.29 -0.36 2.42 16 29 H 0.08 1.03 7.69 -51.92 -0.40 0.63 16 30 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.13 1.84 6.30 -52.49 -0.33 1.51 16 35 H 0.06 0.99 7.66 -51.93 -0.40 0.59 16 36 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -30.33 340.62 -9.05 -39.38 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.85 Total: 2.63 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.83 Total: -24.17 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.70 Total: -33.94 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.18 Total: -5.61 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.33 -9.05 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.263 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds