Wall clock time and date at job start Mon Mar 30 2020 07:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 5 5 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 6 6 C 1.50696 * 109.47344 * 184.99683 * 5 2 1 7 7 C 1.38163 * 120.02995 * 264.72302 * 6 5 2 8 8 C 1.38241 * 120.05697 * 179.77218 * 7 6 5 9 9 C 1.38292 * 120.10943 * 0.49762 * 8 7 6 10 10 C 1.38121 * 120.05608 * 359.75711 * 9 8 7 11 11 C 1.38714 * 120.02507 * 84.99751 * 6 5 2 12 12 O 1.35898 * 120.05998 * 0.02562 * 11 6 5 13 13 C 1.42900 * 117.00245 * 180.02562 * 12 11 6 14 14 C 1.53002 * 109.46948 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46646 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.46836 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99894 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99735 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00203 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99661 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47366 * 59.99979 * 20 18 16 22 22 H 1.48505 * 109.47057 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46928 * 299.99555 * 20 18 16 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.00898 * 111.00245 * 300.00105 * 4 2 1 28 28 H 1.00904 * 111.00313 * 63.95922 * 4 2 1 29 29 H 1.09008 * 109.46873 * 304.99791 * 5 2 1 30 30 H 1.08997 * 109.47047 * 64.99480 * 5 2 1 31 31 H 1.07998 * 119.96893 * 0.02562 * 7 6 5 32 32 H 1.07999 * 119.94741 * 180.25738 * 8 7 6 33 33 H 1.08003 * 119.96786 * 179.77082 * 9 8 7 34 34 H 1.08002 * 120.02532 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.46815 * 299.99704 * 13 12 11 36 36 H 1.09000 * 109.47452 * 59.99469 * 13 12 11 37 37 H 1.09000 * 109.46970 * 299.99424 * 14 13 12 38 38 H 1.08997 * 109.47101 * 59.99920 * 14 13 12 39 39 H 1.09000 * 109.46941 * 299.99411 * 15 14 13 40 40 H 1.08993 * 109.47784 * 59.99725 * 15 14 13 41 41 H 0.96997 * 119.99579 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0400 -0.7213 1.2492 6 6 3.5419 -0.6150 1.3127 7 6 4.3290 -1.6343 0.8122 8 6 5.7068 -1.5353 0.8658 9 6 6.3008 -0.4210 1.4297 10 6 5.5184 0.5983 1.9362 11 6 4.1353 0.5037 1.8788 12 8 3.3634 1.5049 2.3774 13 6 4.0427 2.6267 2.9450 14 6 3.0160 3.6424 3.4500 15 6 3.7434 4.8438 4.0572 16 6 2.7322 5.8446 4.5541 17 1 1.6764 5.6441 4.4472 18 6 3.1550 7.0163 5.1453 19 7 4.4407 7.2603 5.2759 20 14 1.9015 8.2565 5.7619 21 1 1.0445 7.6221 6.7955 22 1 2.6075 9.4226 6.3511 23 1 1.0563 8.7111 4.6287 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6960 -1.6480 -1.2227 28 1 1.7502 -0.1990 -2.0373 29 1 1.6054 -0.2617 2.1370 30 1 1.7516 -1.7715 1.2056 31 1 3.8674 -2.5073 0.3749 32 1 6.3203 -2.3313 0.4703 33 1 7.3774 -0.3477 1.4737 34 1 5.9828 1.4682 2.3768 35 1 4.6627 2.2930 3.7770 36 1 4.6722 3.0921 2.1865 37 1 2.3956 3.9762 2.6183 38 1 2.3869 3.1767 4.2086 39 1 4.3641 4.5104 4.8888 40 1 4.3722 5.3094 3.2984 41 1 4.7380 8.0844 5.6921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:46 Heat of formation + Delta-G solvation = -62.479980 kcal Electronic energy + Delta-G solvation = -19400.848153 eV Core-core repulsion = 16471.891190 eV Total energy + Delta-G solvation = -2928.956963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18171 -38.64528 -37.32667 -35.96843 -33.74654 -32.71583 -30.84712 -29.74802 -28.79788 -27.25457 -25.46460 -23.10629 -22.81623 -21.86234 -21.26126 -18.96659 -18.41460 -17.31682 -17.15624 -16.80873 -16.51029 -16.28585 -15.50971 -15.19905 -14.96602 -14.65121 -14.58045 -14.09191 -14.02331 -13.63274 -13.44473 -13.30940 -12.99030 -12.83036 -12.60711 -12.49234 -12.30978 -12.16789 -12.13162 -11.77735 -11.59477 -11.47652 -11.46445 -11.26703 -10.57765 -9.65270 -9.51742 -8.95893 -8.22961 -6.34368 0.50795 0.61107 1.40035 1.43168 1.51159 2.28190 2.43890 2.92230 3.10754 3.68483 3.87627 3.98531 4.01790 4.03335 4.14569 4.24316 4.36616 4.42112 4.45426 4.53890 4.57928 4.72808 4.77348 4.80370 4.91986 4.92745 5.03564 5.07992 5.16534 5.26247 5.31830 5.45366 5.55103 5.63439 5.64105 5.71940 5.78680 6.00742 6.18956 6.34268 6.55443 6.72879 6.80785 7.34983 8.89014 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.022120 B = 0.003921 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.545802 B = 7138.994115 C = 8198.909150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.098 3.902 3 H 0.051 0.949 4 N -0.842 5.842 5 C -0.061 4.061 6 C -0.110 4.110 7 C -0.063 4.063 8 C -0.162 4.162 9 C -0.094 4.094 10 C -0.229 4.229 11 C 0.103 3.897 12 O -0.325 6.325 13 C 0.074 3.926 14 C -0.093 4.093 15 C 0.029 3.971 16 C -0.547 4.547 17 H 0.061 0.939 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.267 1.267 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.347 0.653 28 H 0.345 0.655 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.059 0.941 39 H -0.002 1.002 40 H -0.003 1.003 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 -20.131 -11.769 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.013 4.013 3 H 0.070 0.930 4 N -0.372 5.372 5 C -0.098 4.098 6 C -0.110 4.110 7 C -0.081 4.081 8 C -0.180 4.180 9 C -0.112 4.112 10 C -0.248 4.248 11 C 0.058 3.942 12 O -0.239 6.239 13 C -0.001 4.001 14 C -0.131 4.131 15 C -0.008 4.008 16 C -0.585 4.585 17 H 0.079 0.921 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.192 1.192 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.160 0.840 28 H 0.158 0.842 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.157 0.843 34 H 0.137 0.863 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.228 -19.841 -11.397 22.989 hybrid contribution -0.952 1.227 0.374 1.597 sum -3.180 -18.614 -11.023 21.865 Atomic orbital electron populations 1.22564 0.96507 1.02645 1.02236 1.21188 0.92432 0.97211 0.90515 0.93039 1.58803 1.67665 1.06806 1.03958 1.20450 0.90358 1.01578 0.97445 1.19301 0.96795 0.92955 1.01993 1.21035 0.93274 0.97668 0.96116 1.21347 0.95211 0.99017 1.02391 1.21179 1.00392 0.93056 0.96588 1.21425 0.92931 1.02420 1.08015 1.19290 0.90163 0.89221 0.95553 1.86018 1.36131 1.28349 1.73410 1.22779 0.95721 0.84887 0.96745 1.21399 0.97514 0.94277 0.99867 1.18905 0.95273 0.92063 0.94577 1.21596 0.93719 1.03909 1.39227 0.92076 1.25970 0.97362 1.00337 0.95948 1.70081 1.15730 1.26458 1.44920 0.85476 0.78693 0.77862 0.78884 1.19122 1.20675 1.19156 0.92877 0.92248 0.91167 0.83959 0.84213 0.91944 0.89325 0.83411 0.83507 0.84289 0.86277 0.92393 0.92567 0.92348 0.92221 0.98353 0.98426 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 9.48 71.98 0.68 -2.46 16 2 C 0.10 2.07 3.35 44.92 0.15 2.22 16 3 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 4 N -0.84 -14.11 8.84 -168.67 -1.49 -15.60 16 5 C -0.06 -1.36 4.72 29.85 0.14 -1.22 16 6 C -0.11 -2.88 4.90 -19.77 -0.10 -2.98 16 7 C -0.06 -1.35 9.55 22.25 0.21 -1.14 16 8 C -0.16 -3.36 10.04 22.28 0.22 -3.13 16 9 C -0.09 -2.27 10.04 22.25 0.22 -2.04 16 10 C -0.23 -6.83 9.04 22.37 0.20 -6.63 16 11 C 0.10 3.27 6.66 22.51 0.15 3.42 16 12 O -0.32 -11.61 9.27 -92.40 -0.86 -12.47 16 13 C 0.07 2.77 4.74 71.98 0.34 3.11 16 14 C -0.09 -4.03 5.52 30.59 0.17 -3.86 16 15 C 0.03 1.55 4.97 29.85 0.15 1.70 16 16 C -0.55 -31.48 9.11 25.60 0.23 -31.24 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 20 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.35 4.26 9.00 -89.70 -0.81 3.46 16 28 H 0.34 5.07 9.07 -89.69 -0.81 4.26 16 29 H 0.06 1.62 7.69 -2.38 -0.02 1.60 16 30 H 0.09 1.53 8.05 -2.39 -0.02 1.51 16 31 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 32 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.12 3.61 6.30 -2.91 -0.02 3.59 16 35 H 0.06 2.13 7.66 -2.39 -0.02 2.11 16 36 H 0.06 2.08 7.66 -2.39 -0.02 2.07 16 37 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -66.02 340.62 2.60 -63.42 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -0.61 Total: 18.46 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 3.24 Total: -43.68 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -1.21 Total: -72.11 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.86 Total: -12.47 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -66.02 2.60 -63.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.940 kcal (2) G-P(sol) polarization free energy of solvation -66.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds