Wall clock time and date at job start Mon Mar 30 2020 07:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 O 1.42901 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.36005 * 116.99661 * 179.97438 * 4 3 2 6 6 C 1.38700 * 119.98130 * 359.72420 * 5 4 3 7 7 C 1.38114 * 120.01604 * 179.76386 * 6 5 4 8 8 C 1.38865 * 119.97975 * 0.53437 * 7 6 5 9 9 N 1.39936 * 120.01686 * 179.69874 * 8 7 6 10 10 C 1.46499 * 119.99951 * 0.02562 * 9 8 7 11 11 H 1.08996 * 109.47358 * 324.99469 * 10 9 8 12 12 C 1.50701 * 109.46843 * 205.00040 * 10 9 8 13 13 H 1.08007 * 119.99928 * 359.97438 * 12 10 9 14 14 C 1.37882 * 120.00197 * 180.02562 * 12 10 9 15 15 N 1.31511 * 119.99567 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00003 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47191 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.46996 * 120.00080 * 16 14 12 19 19 H 1.48504 * 109.47113 * 239.99613 * 16 14 12 20 20 C 1.53001 * 109.47242 * 85.00000 * 10 9 8 21 21 C 1.52995 * 109.46899 * 294.99690 * 20 10 9 22 22 C 1.38864 * 119.96134 * 359.71945 * 8 7 6 23 23 C 1.38114 * 119.98209 * 0.02562 * 22 8 7 24 24 H 1.09004 * 109.47100 * 299.99832 * 1 2 3 25 25 H 1.08999 * 109.47046 * 60.00020 * 1 2 3 26 26 H 1.09005 * 109.47524 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46945 * 239.99459 * 2 1 3 28 28 H 1.09007 * 109.46896 * 119.99706 * 2 1 3 29 29 H 1.08996 * 109.47090 * 59.99784 * 3 2 1 30 30 H 1.08999 * 109.47084 * 299.99957 * 3 2 1 31 31 H 1.08000 * 119.99003 * 359.97438 * 6 5 4 32 32 H 1.07993 * 120.00927 * 180.25438 * 7 6 5 33 33 H 0.97005 * 119.99824 * 180.02562 * 9 8 7 34 34 H 0.96994 * 120.00015 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.46824 * 54.99673 * 20 10 9 36 36 H 1.09000 * 109.46817 * 174.99961 * 20 10 9 37 37 H 1.08995 * 109.47382 * 300.00049 * 21 20 10 38 38 H 1.09000 * 109.47165 * 60.00484 * 21 20 10 39 39 H 1.09003 * 109.47032 * 180.02562 * 21 20 10 40 40 H 1.07997 * 120.00795 * 180.02562 * 22 8 7 41 41 H 1.07993 * 119.98766 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0864 2.6542 0.0001 6 6 3.3306 3.8172 -0.0067 7 6 3.9568 5.0482 -0.0022 8 6 5.3436 5.1213 -0.0021 9 7 5.9788 6.3682 -0.0040 10 6 5.1809 7.5968 -0.0054 11 1 4.2770 7.4423 -0.5945 12 6 5.9872 8.7186 -0.6077 13 1 6.9935 8.5347 -0.9542 14 6 5.4406 9.9798 -0.7153 15 7 4.2155 10.2037 -0.2928 16 14 6.4402 11.3704 -1.4611 17 1 7.7788 10.8620 -1.8547 18 1 5.7384 11.8974 -2.6590 19 1 6.5984 12.4576 -0.4619 20 6 4.7981 7.9580 1.4312 21 6 3.8764 6.8776 2.0003 22 6 6.0994 3.9564 -0.0007 23 6 5.4716 2.7263 0.0002 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.2521 3.7601 -0.0120 32 1 3.3682 5.9536 -0.0033 33 1 6.9476 6.4189 -0.0043 34 1 3.8308 11.0909 -0.3688 35 1 5.6989 8.0254 2.0412 36 1 4.2812 8.9176 1.4390 37 1 2.9757 6.8101 1.3903 38 1 4.3933 5.9180 1.9924 39 1 3.6033 7.1351 3.0236 40 1 7.1780 4.0124 -0.0002 41 1 6.0593 1.8203 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051785892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:34 Heat of formation + Delta-G solvation = -24.253409 kcal Electronic energy + Delta-G solvation = -19700.306123 eV Core-core repulsion = 16773.006788 eV Total energy + Delta-G solvation = -2927.299335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.69569 -37.93117 -35.49677 -33.85760 -32.44613 -31.28860 -30.15914 -28.39740 -26.70389 -25.57073 -23.06743 -22.75644 -21.52491 -20.91416 -19.36356 -17.77365 -17.12800 -16.12117 -15.79729 -15.45135 -14.85896 -14.32317 -14.10529 -13.96302 -13.60080 -13.16354 -13.11287 -12.49651 -12.46747 -12.18381 -12.06807 -11.80530 -11.71665 -11.31141 -11.23671 -11.14088 -10.94112 -10.85609 -10.57208 -10.37810 -10.14177 -10.10699 -9.61218 -9.08325 -8.75834 -8.46364 -8.35182 -6.25016 -6.15728 -4.24673 1.90228 2.27052 3.21169 3.29579 3.32899 3.53454 4.26063 4.44885 4.63982 4.78958 4.83338 5.12575 5.14834 5.31874 5.33709 5.36212 5.45703 5.55286 5.76142 5.87272 5.89253 5.93382 6.07272 6.17009 6.22038 6.32171 6.49782 6.54541 6.65408 6.90824 6.96682 6.98099 7.04654 7.19101 7.26332 7.50812 7.66747 7.82492 7.93367 8.10078 8.40808 8.74394 8.94542 9.42524 10.88467 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032959 B = 0.003916 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.339035 B = 7147.712690 C = 7472.188984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.062 3.938 4 O -0.326 6.326 5 C 0.041 3.959 6 C -0.157 4.157 7 C -0.164 4.164 8 C 0.209 3.791 9 N -0.728 5.728 10 C 0.274 3.726 11 H 0.038 0.962 12 C -0.528 4.528 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.900 3.100 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.133 4.133 21 C -0.152 4.152 22 C -0.184 4.184 23 C -0.102 4.102 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.389 0.611 34 H 0.263 0.737 35 H 0.034 0.966 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.028 0.972 40 H 0.119 0.881 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 -14.404 1.570 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.014 4.014 4 O -0.242 6.242 5 C -0.005 4.005 6 C -0.177 4.177 7 C -0.187 4.187 8 C 0.101 3.899 9 N -0.352 5.352 10 C 0.171 3.829 11 H 0.056 0.944 12 C -0.567 4.567 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.524 5.524 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.172 4.172 21 C -0.209 4.209 22 C -0.208 4.208 23 C -0.122 4.122 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.222 0.778 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.137 0.863 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.337 -14.222 1.580 14.952 hybrid contribution 0.619 1.071 -0.330 1.281 sum -3.718 -13.151 1.250 13.723 Atomic orbital electron populations 1.21692 0.94619 1.02158 1.02241 1.21461 0.95750 0.95481 1.03324 1.22675 0.79863 0.97816 1.01019 1.85953 1.20013 1.27650 1.90540 1.18554 0.92004 0.83539 1.06394 1.20917 0.98982 0.92038 1.05737 1.20912 0.93330 0.97836 1.06584 1.17960 0.91903 0.86496 0.93537 1.45486 1.08204 1.02871 1.78656 1.18694 0.91517 0.80070 0.92595 0.94429 1.21278 1.00896 0.93841 1.40660 0.92101 1.24879 0.95071 0.98596 0.95194 1.69874 1.13916 1.22369 1.46210 0.86409 0.80167 0.81779 0.78870 1.19758 1.20880 1.20892 1.22029 0.97715 1.00028 0.97411 1.22203 0.99823 1.00149 0.98720 1.20326 0.98903 0.90658 1.10917 1.19949 0.91077 0.97342 1.03793 0.92409 0.92394 0.92037 0.91107 0.91116 0.92624 0.92607 0.86571 0.84598 0.77844 0.92660 0.94719 0.88358 0.93543 0.93195 0.95286 0.86343 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.15 6.30 -26.73 -0.17 -1.32 16 3 C 0.06 0.74 4.74 37.16 0.18 0.92 16 4 O -0.33 -5.00 10.14 -19.76 -0.20 -5.20 16 5 C 0.04 0.68 6.69 -39.24 -0.26 0.42 16 6 C -0.16 -2.67 9.03 -39.46 -0.36 -3.02 16 7 C -0.16 -3.11 6.72 -39.39 -0.26 -3.37 16 8 C 0.21 4.02 5.49 -83.69 -0.46 3.56 16 9 N -0.73 -15.08 5.18 -53.24 -0.28 -15.35 16 10 C 0.27 6.55 2.20 -69.08 -0.15 6.39 16 11 H 0.04 0.99 6.48 -51.93 -0.34 0.65 16 12 C -0.53 -13.78 8.73 -34.44 -0.30 -14.08 16 13 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 14 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 15 N -0.89 -24.03 11.29 55.43 0.63 -23.40 16 16 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 21 C -0.15 -3.05 8.22 37.15 0.31 -2.75 16 22 C -0.18 -3.15 9.89 -39.40 -0.39 -3.54 16 23 C -0.10 -1.67 9.98 -39.46 -0.39 -2.07 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 29 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 30 H 0.06 0.65 7.64 -51.93 -0.40 0.25 16 31 H 0.12 1.72 6.29 -52.49 -0.33 1.39 16 32 H 0.14 2.74 4.00 -52.49 -0.21 2.53 16 33 H 0.39 7.56 8.55 -40.82 -0.35 7.21 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 2.52 5.95 -51.93 -0.31 2.21 16 37 H 0.05 0.92 6.35 -51.93 -0.33 0.59 16 38 H 0.05 0.99 5.39 -51.93 -0.28 0.71 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -27.25 323.62 -8.42 -35.67 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.29 Total: 9.13 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.14 Total: -21.19 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.35 Total: -38.76 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.20 Total: -5.20 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.25 -8.42 -35.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051785892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.416 kcal (2) G-P(sol) polarization free energy of solvation -27.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds