Wall clock time and date at job start Mon Mar 30 2020 07:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 O 1.42901 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.36005 * 116.99661 * 179.97438 * 4 3 2 6 6 C 1.38700 * 119.98130 * 359.72420 * 5 4 3 7 7 C 1.38114 * 120.01604 * 179.76386 * 6 5 4 8 8 C 1.38865 * 119.97975 * 0.53437 * 7 6 5 9 9 N 1.39936 * 120.01686 * 179.69874 * 8 7 6 10 10 C 1.46499 * 119.99951 * 0.02562 * 9 8 7 11 11 H 1.08996 * 109.47358 * 324.99469 * 10 9 8 12 12 C 1.50701 * 109.46843 * 205.00040 * 10 9 8 13 13 H 1.08007 * 119.99928 * 359.97438 * 12 10 9 14 14 C 1.37882 * 120.00197 * 180.02562 * 12 10 9 15 15 N 1.31511 * 119.99567 * 359.97438 * 14 12 10 16 16 Si 1.86795 * 120.00003 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47191 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.46996 * 120.00080 * 16 14 12 19 19 H 1.48504 * 109.47113 * 239.99613 * 16 14 12 20 20 C 1.53001 * 109.47242 * 85.00000 * 10 9 8 21 21 C 1.52995 * 109.46899 * 294.99690 * 20 10 9 22 22 C 1.38864 * 119.96134 * 359.71945 * 8 7 6 23 23 C 1.38114 * 119.98209 * 0.02562 * 22 8 7 24 24 H 1.09004 * 109.47100 * 299.99832 * 1 2 3 25 25 H 1.08999 * 109.47046 * 60.00020 * 1 2 3 26 26 H 1.09005 * 109.47524 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46945 * 239.99459 * 2 1 3 28 28 H 1.09007 * 109.46896 * 119.99706 * 2 1 3 29 29 H 1.08996 * 109.47090 * 59.99784 * 3 2 1 30 30 H 1.08999 * 109.47084 * 299.99957 * 3 2 1 31 31 H 1.08000 * 119.99003 * 359.97438 * 6 5 4 32 32 H 1.07993 * 120.00927 * 180.25438 * 7 6 5 33 33 H 0.97005 * 119.99824 * 180.02562 * 9 8 7 34 34 H 0.96994 * 120.00015 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.46824 * 54.99673 * 20 10 9 36 36 H 1.09000 * 109.46817 * 174.99961 * 20 10 9 37 37 H 1.08995 * 109.47382 * 300.00049 * 21 20 10 38 38 H 1.09000 * 109.47165 * 60.00484 * 21 20 10 39 39 H 1.09003 * 109.47032 * 180.02562 * 21 20 10 40 40 H 1.07997 * 120.00795 * 180.02562 * 22 8 7 41 41 H 1.07993 * 119.98766 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0864 2.6542 0.0001 6 6 3.3306 3.8172 -0.0067 7 6 3.9568 5.0482 -0.0022 8 6 5.3436 5.1213 -0.0021 9 7 5.9788 6.3682 -0.0040 10 6 5.1809 7.5968 -0.0054 11 1 4.2770 7.4423 -0.5945 12 6 5.9872 8.7186 -0.6077 13 1 6.9935 8.5347 -0.9542 14 6 5.4406 9.9798 -0.7153 15 7 4.2155 10.2037 -0.2928 16 14 6.4402 11.3704 -1.4611 17 1 7.7788 10.8620 -1.8547 18 1 5.7384 11.8974 -2.6590 19 1 6.5984 12.4576 -0.4619 20 6 4.7981 7.9580 1.4312 21 6 3.8764 6.8776 2.0003 22 6 6.0994 3.9564 -0.0007 23 6 5.4716 2.7263 0.0002 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.2521 3.7601 -0.0120 32 1 3.3682 5.9536 -0.0033 33 1 6.9476 6.4189 -0.0043 34 1 3.8308 11.0909 -0.3688 35 1 5.6989 8.0254 2.0412 36 1 4.2812 8.9176 1.4390 37 1 2.9757 6.8101 1.3903 38 1 4.3933 5.9180 1.9924 39 1 3.6033 7.1351 3.0236 40 1 7.1780 4.0124 -0.0002 41 1 6.0593 1.8203 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051785892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:33 Heat of formation + Delta-G solvation = -38.300115 kcal Electronic energy + Delta-G solvation = -19700.915233 eV Core-core repulsion = 16773.006788 eV Total energy + Delta-G solvation = -2927.908446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00813 -39.30982 -37.04930 -34.85744 -34.15046 -32.91203 -31.58834 -29.96837 -27.98534 -26.94742 -24.82607 -24.07089 -22.78918 -22.03036 -21.05122 -19.15058 -18.75370 -17.42414 -17.10276 -17.08241 -16.34470 -15.96007 -15.36131 -15.23019 -14.85888 -14.61479 -14.41615 -14.07411 -13.67970 -13.53588 -13.22710 -13.17246 -13.09575 -12.90795 -12.73689 -12.59973 -12.28653 -12.12435 -11.99413 -11.91069 -11.66297 -11.52512 -11.29720 -10.93909 -10.54843 -10.11735 -9.76357 -8.17630 -7.72920 -6.31151 0.53902 0.88027 1.40750 1.43215 1.53829 2.37851 2.44634 3.03249 3.05922 3.13823 3.95477 4.01017 4.08517 4.13423 4.36185 4.44221 4.47048 4.57254 4.59917 4.62868 4.69236 4.72055 4.85246 4.88110 5.04509 5.13915 5.16651 5.22367 5.26166 5.32393 5.40510 5.42119 5.54520 5.61479 5.63766 5.70209 5.86792 5.96337 6.18798 6.58275 6.68174 6.92467 7.29322 7.42248 8.88024 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032959 B = 0.003916 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.339035 B = 7147.712690 C = 7472.188984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.053 3.947 4 O -0.333 6.333 5 C 0.045 3.955 6 C -0.160 4.160 7 C -0.178 4.178 8 C 0.185 3.815 9 N -0.734 5.734 10 C 0.285 3.715 11 H 0.007 0.993 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.019 3.981 15 N -0.911 5.911 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.279 1.279 20 C -0.125 4.125 21 C -0.138 4.138 22 C -0.176 4.176 23 C -0.105 4.105 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.117 0.883 33 H 0.393 0.607 34 H 0.265 0.735 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.139 0.861 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 -15.998 1.605 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.022 4.022 4 O -0.248 6.248 5 C -0.001 4.001 6 C -0.179 4.179 7 C -0.201 4.201 8 C 0.079 3.921 9 N -0.360 5.360 10 C 0.181 3.819 11 H 0.025 0.975 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.181 4.181 15 N -0.550 5.550 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.165 4.165 21 C -0.195 4.195 22 C -0.199 4.199 23 C -0.124 4.124 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.135 0.865 33 H 0.227 0.773 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.157 0.843 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.145 -15.861 1.617 16.474 hybrid contribution 0.494 1.413 -0.353 1.538 sum -3.651 -14.448 1.264 14.956 Atomic orbital electron populations 1.21691 0.93062 1.03198 1.02488 1.21474 0.96965 0.93657 1.03458 1.22981 0.78108 0.99788 1.01364 1.85966 1.21924 1.26757 1.90185 1.18742 0.92447 0.83966 1.04945 1.21064 1.00040 0.91435 1.05372 1.20844 0.93385 0.97952 1.07872 1.18157 0.92242 0.86493 0.95183 1.45165 1.08070 1.02523 1.80256 1.18313 0.90442 0.80939 0.92226 0.97538 1.21616 1.01080 0.94882 1.40887 0.92268 1.25642 0.96025 1.00829 0.95622 1.69997 1.15160 1.22840 1.46973 0.85440 0.78862 0.78890 0.77998 1.19240 1.20726 1.20497 1.21860 0.97696 0.99653 0.97261 1.22045 0.99037 0.99180 0.99240 1.20558 0.99933 0.90031 1.09352 1.20272 0.91316 0.97954 1.02862 0.92146 0.92202 0.90631 0.91022 0.90955 0.92195 0.92314 0.84827 0.86524 0.77312 0.92621 0.95242 0.91109 0.93713 0.92785 0.93777 0.84286 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.96 6.30 30.59 0.19 -1.76 16 3 C 0.05 1.15 4.74 71.98 0.34 1.49 16 4 O -0.33 -9.47 10.14 -93.60 -0.95 -10.41 16 5 C 0.04 1.42 6.69 22.49 0.15 1.57 16 6 C -0.16 -5.26 9.03 22.35 0.20 -5.05 16 7 C -0.18 -6.76 6.72 22.39 0.15 -6.61 16 8 C 0.18 7.05 5.49 38.15 0.21 7.26 16 9 N -0.73 -30.70 5.18 -322.36 -1.67 -32.37 16 10 C 0.28 14.00 2.20 44.25 0.10 14.10 16 11 H 0.01 0.38 6.48 -2.39 -0.02 0.36 16 12 C -0.55 -29.03 8.73 25.60 0.22 -28.80 16 13 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.02 1.01 5.29 84.66 0.45 1.46 16 15 N -0.91 -50.56 11.29 21.45 0.24 -50.31 16 16 Si 0.96 42.33 29.54 68.60 2.03 44.36 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 C -0.13 -5.93 5.45 30.59 0.17 -5.77 16 21 C -0.14 -5.58 8.22 71.98 0.59 -4.99 16 22 C -0.18 -5.69 9.89 22.39 0.22 -5.47 16 23 C -0.10 -3.18 9.98 22.35 0.22 -2.96 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.06 1.26 7.67 -2.39 -0.02 1.25 16 30 H 0.06 1.25 7.64 -2.39 -0.02 1.24 16 31 H 0.13 3.80 6.29 -2.91 -0.02 3.78 16 32 H 0.12 4.87 4.00 -2.91 -0.01 4.86 16 33 H 0.39 15.34 8.55 -92.70 -0.79 14.54 16 34 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 3.75 5.95 -2.39 -0.01 3.74 16 37 H 0.04 1.80 6.35 -2.39 -0.02 1.78 16 38 H 0.05 2.13 5.39 -2.39 -0.01 2.12 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -58.13 323.62 3.81 -54.32 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.23 Total: 31.10 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.93 Total: -36.68 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -1.43 Total: -82.69 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.95 Total: -10.41 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -58.13 3.81 -54.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051785892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.022 kcal (2) G-P(sol) polarization free energy of solvation -58.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds