Wall clock time and date at job start Mon Mar 30 2020 06:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 H 1.09000 * 109.46976 * 54.64325 * 3 2 1 5 5 C 1.50705 * 109.46906 * 174.63973 * 3 2 1 6 6 H 1.07993 * 119.99511 * 120.00258 * 5 3 2 7 7 C 1.37876 * 120.00205 * 300.00094 * 5 3 2 8 8 N 1.31523 * 119.99878 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00287 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47060 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47637 * 119.99831 * 9 7 5 12 12 H 1.48496 * 109.47453 * 240.00066 * 9 7 5 13 13 N 1.46898 * 109.47131 * 294.64059 * 3 2 1 14 14 C 1.46897 * 110.99912 * 102.26736 * 13 3 2 15 15 H 1.09000 * 109.47250 * 337.18898 * 14 13 3 16 16 C 1.53005 * 109.46692 * 97.18624 * 14 13 3 17 17 C 1.52994 * 109.47408 * 294.48568 * 16 14 13 18 18 C 1.50696 * 109.47015 * 217.18559 * 14 13 3 19 19 C 1.38268 * 119.94344 * 319.72774 * 18 14 13 20 20 C 1.38147 * 120.05115 * 179.72812 * 19 18 14 21 21 C 1.38730 * 119.94411 * 0.54825 * 20 19 18 22 22 O 1.35909 * 120.05435 * 179.75275 * 21 20 19 23 23 C 1.38735 * 119.89089 * 359.72450 * 21 20 19 24 24 C 1.38137 * 119.94026 * 0.02562 * 23 21 20 25 25 H 1.09004 * 109.46301 * 305.22569 * 1 2 3 26 26 H 1.08994 * 109.47148 * 65.21989 * 1 2 3 27 27 H 1.08999 * 109.47093 * 185.22830 * 1 2 3 28 28 H 1.09006 * 109.47128 * 239.99954 * 2 1 3 29 29 H 1.08999 * 109.47188 * 120.00692 * 2 1 3 30 30 H 0.97000 * 119.99819 * 180.02562 * 8 7 5 31 31 H 1.00899 * 110.99526 * 338.31454 * 13 3 2 32 32 H 1.08997 * 109.46914 * 54.49059 * 16 14 13 33 33 H 1.09001 * 109.46552 * 174.48620 * 16 14 13 34 34 H 1.09006 * 109.47097 * 305.32435 * 17 16 14 35 35 H 1.09005 * 109.47079 * 65.31567 * 17 16 14 36 36 H 1.08996 * 109.47687 * 185.31758 * 17 16 14 37 37 H 1.07995 * 119.97374 * 0.02562 * 19 18 14 38 38 H 1.08000 * 120.02813 * 180.27206 * 20 19 18 39 39 H 0.96699 * 113.99378 * 269.97617 * 22 21 20 40 40 H 1.07996 * 120.02367 * 179.97438 * 23 21 20 41 41 H 1.08001 * 119.97175 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6005 1.9833 0.8381 5 6 3.5413 1.4444 0.1327 6 1 4.1511 1.8873 -0.6407 7 6 4.1361 0.8808 1.2416 8 7 3.3933 0.3409 2.1832 9 14 5.9967 0.8838 1.4064 10 1 6.5976 1.5463 0.2210 11 1 6.3836 1.6218 2.6356 12 1 6.4883 -0.5147 1.4934 13 7 1.6589 2.0966 -1.2589 14 6 0.5037 2.9826 -1.0630 15 1 -0.0506 2.6669 -0.1792 16 6 0.9905 4.4207 -0.8729 17 6 1.7888 4.5212 0.4284 18 6 -0.3942 2.9117 -2.2711 19 6 0.1565 2.8624 -3.5384 20 6 -0.6645 2.7918 -4.6472 21 6 -2.0427 2.7817 -4.4889 22 8 -2.8525 2.7173 -5.5784 23 6 -2.5929 2.8370 -3.2165 24 6 -1.7675 2.9024 -2.1107 25 1 -0.3632 0.5928 0.8396 26 1 -0.3633 0.4307 -0.9330 27 1 -0.3633 -1.0234 0.0936 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8118 -0.0553 2.9635 31 1 1.4736 1.4146 -1.9790 32 1 1.6263 4.7029 -1.7120 33 1 0.1325 5.0913 -0.8255 34 1 1.1838 4.1494 1.2554 35 1 2.6965 3.9233 0.3449 36 1 2.0550 5.5620 0.6120 37 1 1.2294 2.8744 -3.6613 38 1 -0.2338 2.7488 -5.6367 39 1 -3.0986 3.5810 -5.9371 40 1 -3.6655 2.8297 -3.0908 41 1 -2.1953 2.9450 -1.1199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:57 Heat of formation + Delta-G solvation = -50.204228 kcal Electronic energy + Delta-G solvation = -20414.344295 eV Core-core repulsion = 17485.919648 eV Total energy + Delta-G solvation = -2928.424647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88322 -39.06541 -37.30298 -35.24131 -33.62851 -31.96597 -31.50106 -30.72240 -28.38089 -25.96627 -24.42892 -23.75858 -22.96587 -21.51939 -21.10040 -19.28889 -18.34255 -17.24432 -16.98463 -16.44217 -16.20626 -15.70328 -15.34257 -14.94848 -14.89241 -14.35286 -14.22650 -14.10484 -13.70652 -13.63236 -13.21274 -13.14731 -12.88702 -12.71837 -12.67588 -12.44901 -12.18413 -11.99450 -11.83897 -11.57110 -11.49170 -11.37336 -11.28441 -10.86246 -10.35858 -9.88366 -9.36773 -8.84802 -8.00572 -6.09194 0.31117 0.45523 1.42242 1.45652 1.56238 2.48392 2.73232 3.25944 3.35898 3.64852 3.86098 4.05295 4.12599 4.38580 4.42059 4.46995 4.54210 4.54579 4.59205 4.71155 4.76197 4.89975 4.99850 5.07459 5.14082 5.15756 5.19362 5.22092 5.35344 5.44287 5.46698 5.50746 5.57110 5.73915 5.75758 5.82704 5.94673 5.96392 6.43043 6.77780 6.91045 6.94877 7.05456 7.59396 9.03144 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028563 B = 0.005029 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.048161 B = 5566.235069 C = 5748.516076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.144 4.144 3 C 0.229 3.771 4 H 0.010 0.990 5 C -0.495 4.495 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.673 5.673 14 C 0.130 3.870 15 H 0.038 0.962 16 C -0.092 4.092 17 C -0.146 4.146 18 C -0.099 4.099 19 C -0.094 4.094 20 C -0.149 4.149 21 C 0.095 3.905 22 O -0.509 6.509 23 C -0.147 4.147 24 C -0.104 4.104 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.257 0.743 31 H 0.327 0.673 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.409 0.591 40 H 0.143 0.857 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.330 7.157 -10.851 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.184 4.184 3 C 0.121 3.879 4 H 0.027 0.973 5 C -0.534 4.534 6 H 0.069 0.931 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.304 5.304 14 C 0.020 3.980 15 H 0.056 0.944 16 C -0.130 4.130 17 C -0.203 4.203 18 C -0.099 4.099 19 C -0.113 4.113 20 C -0.167 4.167 21 C 0.051 3.949 22 O -0.322 6.322 23 C -0.166 4.166 24 C -0.123 4.123 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.268 0.732 40 H 0.161 0.839 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.790 6.990 -10.537 16.623 hybrid contribution 0.400 -0.479 0.590 0.859 sum -10.391 6.510 -9.947 15.789 Atomic orbital electron populations 1.21722 0.96778 1.00463 1.00171 1.22092 0.93967 1.01318 1.01016 1.19038 0.93745 0.88793 0.86364 0.97255 1.21499 0.92893 1.34975 1.04074 0.93087 1.25591 1.01528 0.95708 0.95918 1.70007 1.35835 1.40415 1.09977 0.85654 0.81781 0.77312 0.77723 1.19484 1.21116 1.21162 1.60830 1.35487 1.24382 1.09678 1.20552 0.89249 0.94839 0.93363 0.94361 1.21428 0.99169 0.94631 0.97789 1.21723 1.00992 1.00717 0.96883 1.20193 0.94191 1.00603 0.94948 1.21017 1.00546 0.98337 0.91369 1.21570 0.92967 1.02315 0.99870 1.18551 0.89099 1.00581 0.86706 1.84772 1.67598 1.36046 1.43811 1.21526 1.01077 1.02306 0.91644 1.21079 0.92470 0.99399 0.99331 0.94347 0.93257 0.93306 0.95131 0.91459 0.93395 0.85473 0.91903 0.91376 0.94941 0.92851 0.92495 0.85230 0.84187 0.73225 0.83879 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.80 71.98 0.63 -4.54 16 2 C -0.14 -6.75 5.08 30.59 0.16 -6.60 16 3 C 0.23 10.99 1.09 44.17 0.05 11.04 16 4 H 0.01 0.51 6.13 -2.39 -0.01 0.50 16 5 C -0.50 -26.72 7.95 25.60 0.20 -26.52 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.55 5.29 84.65 0.45 1.00 16 8 N -0.92 -52.50 11.29 21.45 0.24 -52.26 16 9 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 13 N -0.67 -26.88 5.28 -477.16 -2.52 -29.40 16 14 C 0.13 4.40 1.44 44.17 0.06 4.47 16 15 H 0.04 1.42 6.38 -2.39 -0.02 1.40 16 16 C -0.09 -2.95 5.58 30.59 0.17 -2.78 16 17 C -0.15 -5.33 8.68 71.98 0.62 -4.70 16 18 C -0.10 -2.83 4.44 -19.85 -0.09 -2.92 16 19 C -0.09 -2.55 8.79 22.26 0.20 -2.35 16 20 C -0.15 -3.50 9.99 22.37 0.22 -3.27 16 21 C 0.10 2.13 6.71 22.51 0.15 2.28 16 22 O -0.51 -9.53 13.50 -92.52 -1.25 -10.78 16 23 C -0.15 -3.28 9.99 22.36 0.22 -3.06 16 24 C -0.10 -2.63 9.66 22.25 0.21 -2.41 16 25 H 0.04 1.49 8.01 -2.38 -0.02 1.47 16 26 H 0.05 1.75 6.83 -2.39 -0.02 1.73 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.03 1.41 8.03 -2.38 -0.02 1.39 16 29 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.33 12.70 6.64 -89.69 -0.60 12.10 16 32 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.03 1.22 7.87 -2.38 -0.02 1.20 16 35 H 0.05 2.35 6.24 -2.38 -0.01 2.33 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.13 3.63 7.61 -2.91 -0.02 3.60 16 38 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 39 H 0.41 3.40 9.06 -74.06 -0.67 2.73 16 40 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.13 3.03 8.03 -2.91 -0.02 3.00 16 Total: -1.00 -60.88 326.02 1.53 -59.35 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.24 Total: 27.36 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 3.27 Total: -40.36 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -2.28 Total: -81.66 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.25 Total: -10.78 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -60.88 1.53 -59.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.149 kcal (2) G-P(sol) polarization free energy of solvation -60.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds