Wall clock time and date at job start Mon Mar 30 2020 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47080 * 2 1 4 4 H 1.09000 * 109.46912 * 178.06812 * 3 2 1 5 5 C 1.50695 * 109.47044 * 58.06436 * 3 2 1 6 6 H 1.08001 * 120.00028 * 244.48391 * 5 3 2 7 7 C 1.37879 * 120.00074 * 64.49087 * 5 3 2 8 8 N 1.31519 * 119.99888 * 9.52668 * 7 5 3 9 9 Si 1.86798 * 120.00323 * 189.25550 * 7 5 3 10 10 H 1.48498 * 109.47592 * 180.27363 * 9 7 5 11 11 H 1.48502 * 109.46975 * 300.27448 * 9 7 5 12 12 H 1.48499 * 109.47115 * 60.26924 * 9 7 5 13 13 N 1.46903 * 109.46972 * 298.06322 * 3 2 1 14 14 C 1.46897 * 110.99976 * 273.02649 * 13 3 2 15 15 H 1.08993 * 109.47714 * 38.09287 * 14 13 3 16 16 C 1.53003 * 109.46609 * 158.09586 * 14 13 3 17 17 C 1.53004 * 109.46950 * 295.49777 * 16 14 13 18 18 C 1.50704 * 109.47084 * 278.08945 * 14 13 3 19 19 C 1.38262 * 119.94786 * 319.73069 * 18 14 13 20 20 C 1.38140 * 120.05579 * 179.72508 * 19 18 14 21 21 C 1.38732 * 119.94405 * 0.52360 * 20 19 18 22 22 O 1.35901 * 120.05838 * 179.72755 * 21 20 19 23 23 C 1.38730 * 119.88917 * 359.74937 * 21 20 19 24 24 C 1.38145 * 119.94136 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.47242 * 306.12930 * 1 2 3 26 26 H 1.09005 * 109.47222 * 66.12843 * 1 2 3 27 27 H 1.09003 * 109.47607 * 186.12404 * 1 2 3 28 28 H 1.09005 * 109.46777 * 239.99981 * 2 1 3 29 29 H 1.08999 * 109.46914 * 120.00215 * 2 1 3 30 30 H 0.96995 * 119.99889 * 356.26375 * 8 7 5 31 31 H 1.00892 * 111.00247 * 36.98599 * 13 3 2 32 32 H 1.08991 * 109.47515 * 55.50284 * 16 14 13 33 33 H 1.09000 * 109.46840 * 175.50281 * 16 14 13 34 34 H 1.08993 * 109.46860 * 65.98553 * 17 16 14 35 35 H 1.09003 * 109.46679 * 185.98420 * 17 16 14 36 36 H 1.08995 * 109.47351 * 305.98254 * 17 16 14 37 37 H 1.08007 * 119.96796 * 359.97438 * 19 18 14 38 38 H 1.08006 * 120.02822 * 180.25188 * 20 19 18 39 39 H 0.96703 * 113.99850 * 270.02617 * 22 21 20 40 40 H 1.07999 * 120.02824 * 179.97438 * 23 21 20 41 41 H 1.08006 * 119.96871 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0346 5 6 1.4989 2.1666 1.2057 6 1 0.8232 2.9993 1.0773 7 6 1.8665 1.7661 2.4728 8 7 2.8272 0.8818 2.6302 9 14 1.0052 2.4852 3.9664 10 1 1.5852 1.8999 5.2018 11 1 1.1900 3.9585 3.9826 12 1 -0.4442 2.1688 3.9019 13 7 1.5889 2.1213 -1.2222 14 6 2.5331 1.9012 -2.3257 15 1 2.9119 0.8801 -2.2817 16 6 1.8184 2.1230 -3.6602 17 6 0.7234 1.0685 -3.8337 18 6 3.6821 2.8688 -2.2043 19 6 3.4452 4.1778 -1.8272 20 6 4.4973 5.0652 -1.7097 21 6 5.7913 4.6449 -1.9811 22 8 6.8274 5.5174 -1.8716 23 6 6.0257 3.3325 -2.3648 24 6 4.9707 2.4477 -2.4763 25 1 -0.3634 0.6059 0.8300 26 1 -0.3634 0.4159 -0.9398 27 1 -0.3634 -1.0218 0.1096 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2400 0.4710 1.8545 31 1 0.6587 1.8256 -1.4777 32 1 1.3710 3.1168 -3.6721 33 1 2.5368 2.0382 -4.4756 34 1 -0.0500 1.2207 -3.0810 35 1 0.2858 1.1594 -4.8279 36 1 1.1544 0.0743 -3.7160 37 1 2.4370 4.5056 -1.6204 38 1 4.3122 6.0865 -1.4112 39 1 7.0238 5.9991 -2.6868 40 1 7.0321 3.0030 -2.5770 41 1 5.1527 1.4258 -2.7746 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:00 Heat of formation + Delta-G solvation = -34.511121 kcal Electronic energy + Delta-G solvation = -20532.363172 eV Core-core repulsion = 17604.619030 eV Total energy + Delta-G solvation = -2927.744143 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58109 -37.79797 -36.06101 -34.24531 -31.53328 -30.63279 -30.38818 -29.05869 -25.91808 -24.52667 -23.55208 -22.43614 -21.89395 -20.20991 -19.29857 -18.14903 -16.73964 -15.89635 -15.58128 -14.93530 -14.75520 -14.46443 -13.68647 -13.66156 -13.50685 -13.11023 -12.90964 -12.86189 -12.56861 -12.26956 -11.82749 -11.63682 -11.54123 -11.14116 -10.89798 -10.79915 -10.74979 -10.57886 -10.17098 -10.14124 -10.03800 -10.01231 -9.84333 -8.65971 -8.59080 -8.14579 -8.06946 -7.33438 -6.24993 -3.92524 1.58755 1.75623 3.48210 3.49742 3.68241 3.99160 4.43893 4.57626 4.91770 5.14558 5.23412 5.30940 5.33163 5.40335 5.46280 5.62117 5.79895 5.88761 5.97161 6.01400 6.05108 6.08333 6.15136 6.19162 6.29623 6.32524 6.42957 6.47000 6.67381 6.68240 6.77874 6.99344 7.01300 7.16789 7.20192 7.27413 7.31159 7.85259 7.97570 8.34283 8.48301 8.70277 8.98905 9.75347 11.11497 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.007420 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.433861 B = 3772.805254 C = 5052.039570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.207 3.793 4 H 0.025 0.975 5 C -0.569 4.569 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.670 5.670 14 C 0.122 3.878 15 H 0.041 0.959 16 C -0.118 4.118 17 C -0.154 4.154 18 C -0.066 4.066 19 C -0.059 4.059 20 C -0.150 4.150 21 C 0.089 3.911 22 O -0.502 6.502 23 C -0.151 4.151 24 C -0.107 4.107 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.028 0.972 28 H 0.019 0.981 29 H 0.066 0.934 30 H 0.268 0.732 31 H 0.332 0.668 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.381 0.619 40 H 0.120 0.880 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.813 3.522 -13.644 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.190 4.190 3 C 0.099 3.901 4 H 0.043 0.957 5 C -0.608 4.608 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.552 5.552 9 Si 0.893 3.107 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.303 5.303 14 C 0.011 3.989 15 H 0.059 0.941 16 C -0.156 4.156 17 C -0.212 4.212 18 C -0.067 4.067 19 C -0.077 4.077 20 C -0.169 4.169 21 C 0.045 3.955 22 O -0.311 6.311 23 C -0.170 4.170 24 C -0.125 4.125 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.153 0.847 38 H 0.140 0.860 39 H 0.236 0.764 40 H 0.138 0.862 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.080 3.917 -11.212 11.926 hybrid contribution -0.016 -0.860 -2.237 2.397 sum 1.064 3.057 -13.449 13.833 Atomic orbital electron populations 1.21612 0.96867 0.99284 1.01201 1.22216 0.95982 1.01498 0.99351 1.19307 0.95166 0.87964 0.87709 0.95700 1.21774 1.30956 1.17231 0.90816 0.92755 1.25669 0.95663 0.96652 1.00625 1.70805 1.21715 1.28435 1.34230 0.83608 0.75504 0.75725 0.75861 1.21060 1.21588 1.21584 1.60783 1.03837 1.62703 1.03003 1.20412 0.91934 0.94917 0.91631 0.94118 1.21653 0.97682 0.99883 0.96378 1.21833 0.99017 0.98999 1.01326 1.19937 0.93823 0.94895 0.97997 1.20941 0.99329 0.92333 0.95131 1.21420 0.91989 1.00686 1.02763 1.18441 0.86575 0.89323 1.01132 1.84853 1.50640 1.56862 1.38724 1.21210 0.99174 0.93643 1.02952 1.20870 0.92104 0.99063 1.00478 0.90895 0.94860 0.95305 0.96262 0.91521 0.92065 0.84736 0.91161 0.92040 0.92267 0.92820 0.92943 0.84653 0.85977 0.76411 0.86165 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.38 37.16 0.35 -2.32 16 2 C -0.15 -3.38 5.46 -26.73 -0.15 -3.53 16 3 C 0.21 4.97 1.75 -68.87 -0.12 4.85 16 4 H 0.03 0.69 6.90 -51.93 -0.36 0.33 16 5 C -0.57 -15.43 7.32 -34.44 -0.25 -15.68 16 6 H 0.05 1.51 7.83 -52.49 -0.41 1.09 16 7 C 0.02 0.49 5.21 -17.82 -0.09 0.40 16 8 N -0.91 -27.33 13.09 55.43 0.73 -26.61 16 9 Si 1.06 25.38 29.91 -169.99 -5.08 20.30 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.67 -13.39 5.29 -102.17 -0.54 -13.93 16 14 C 0.12 2.09 2.09 -68.86 -0.14 1.94 16 15 H 0.04 0.74 7.12 -51.93 -0.37 0.37 16 16 C -0.12 -1.62 5.53 -26.73 -0.15 -1.76 16 17 C -0.15 -1.93 9.60 37.16 0.36 -1.57 16 18 C -0.07 -1.15 4.45 -104.60 -0.47 -1.62 16 19 C -0.06 -1.05 9.31 -39.61 -0.37 -1.42 16 20 C -0.15 -2.48 9.99 -39.43 -0.39 -2.87 16 21 C 0.09 1.42 6.70 -39.22 -0.26 1.16 16 22 O -0.50 -7.00 13.50 -19.43 -0.26 -7.26 16 23 C -0.15 -2.35 9.99 -39.43 -0.39 -2.75 16 24 C -0.11 -1.74 9.66 -39.61 -0.38 -2.12 16 25 H 0.07 1.63 6.94 -51.93 -0.36 1.27 16 26 H 0.03 0.59 6.25 -51.93 -0.32 0.26 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.39 7.52 -51.93 -0.39 0.00 16 29 H 0.07 1.68 6.32 -51.93 -0.33 1.35 16 30 H 0.27 8.00 5.91 -40.82 -0.24 7.76 16 31 H 0.33 6.25 4.30 -39.30 -0.17 6.08 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.78 6.31 -51.93 -0.33 0.45 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.14 2.45 7.72 -52.48 -0.41 2.04 16 38 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.38 3.16 9.06 45.56 0.41 3.57 16 40 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.12 1.71 8.03 -52.48 -0.42 1.29 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -30.86 326.61 -8.16 -39.02 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.45 Total: 10.85 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -2.47 Total: -27.28 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.19 Total: -40.54 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.26 Total: -7.26 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.86 -8.16 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.505 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds