Wall clock time and date at job start Mon Mar 30 2020 06:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47080 * 2 1 4 4 H 1.09000 * 109.46912 * 178.06812 * 3 2 1 5 5 C 1.50695 * 109.47044 * 58.06436 * 3 2 1 6 6 H 1.08001 * 120.00028 * 244.48391 * 5 3 2 7 7 C 1.37879 * 120.00074 * 64.49087 * 5 3 2 8 8 N 1.31519 * 119.99888 * 9.52668 * 7 5 3 9 9 Si 1.86798 * 120.00323 * 189.25550 * 7 5 3 10 10 H 1.48498 * 109.47592 * 180.27363 * 9 7 5 11 11 H 1.48502 * 109.46975 * 300.27448 * 9 7 5 12 12 H 1.48499 * 109.47115 * 60.26924 * 9 7 5 13 13 N 1.46903 * 109.46972 * 298.06322 * 3 2 1 14 14 C 1.46897 * 110.99976 * 273.02649 * 13 3 2 15 15 H 1.08993 * 109.47714 * 38.09287 * 14 13 3 16 16 C 1.53003 * 109.46609 * 158.09586 * 14 13 3 17 17 C 1.53004 * 109.46950 * 295.49777 * 16 14 13 18 18 C 1.50704 * 109.47084 * 278.08945 * 14 13 3 19 19 C 1.38262 * 119.94786 * 319.73069 * 18 14 13 20 20 C 1.38140 * 120.05579 * 179.72508 * 19 18 14 21 21 C 1.38732 * 119.94405 * 0.52360 * 20 19 18 22 22 O 1.35901 * 120.05838 * 179.72755 * 21 20 19 23 23 C 1.38730 * 119.88917 * 359.74937 * 21 20 19 24 24 C 1.38145 * 119.94136 * 0.02562 * 23 21 20 25 25 H 1.09001 * 109.47242 * 306.12930 * 1 2 3 26 26 H 1.09005 * 109.47222 * 66.12843 * 1 2 3 27 27 H 1.09003 * 109.47607 * 186.12404 * 1 2 3 28 28 H 1.09005 * 109.46777 * 239.99981 * 2 1 3 29 29 H 1.08999 * 109.46914 * 120.00215 * 2 1 3 30 30 H 0.96995 * 119.99889 * 356.26375 * 8 7 5 31 31 H 1.00892 * 111.00247 * 36.98599 * 13 3 2 32 32 H 1.08991 * 109.47515 * 55.50284 * 16 14 13 33 33 H 1.09000 * 109.46840 * 175.50281 * 16 14 13 34 34 H 1.08993 * 109.46860 * 65.98553 * 17 16 14 35 35 H 1.09003 * 109.46679 * 185.98420 * 17 16 14 36 36 H 1.08995 * 109.47351 * 305.98254 * 17 16 14 37 37 H 1.08007 * 119.96796 * 359.97438 * 19 18 14 38 38 H 1.08006 * 120.02822 * 180.25188 * 20 19 18 39 39 H 0.96703 * 113.99850 * 270.02617 * 22 21 20 40 40 H 1.07999 * 120.02824 * 179.97438 * 23 21 20 41 41 H 1.08006 * 119.96871 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4426 0.0346 5 6 1.4989 2.1666 1.2057 6 1 0.8232 2.9993 1.0773 7 6 1.8665 1.7661 2.4728 8 7 2.8272 0.8818 2.6302 9 14 1.0052 2.4852 3.9664 10 1 1.5852 1.8999 5.2018 11 1 1.1900 3.9585 3.9826 12 1 -0.4442 2.1688 3.9019 13 7 1.5889 2.1213 -1.2222 14 6 2.5331 1.9012 -2.3257 15 1 2.9119 0.8801 -2.2817 16 6 1.8184 2.1230 -3.6602 17 6 0.7234 1.0685 -3.8337 18 6 3.6821 2.8688 -2.2043 19 6 3.4452 4.1778 -1.8272 20 6 4.4973 5.0652 -1.7097 21 6 5.7913 4.6449 -1.9811 22 8 6.8274 5.5174 -1.8716 23 6 6.0257 3.3325 -2.3648 24 6 4.9707 2.4477 -2.4763 25 1 -0.3634 0.6059 0.8300 26 1 -0.3634 0.4159 -0.9398 27 1 -0.3634 -1.0218 0.1096 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2400 0.4710 1.8545 31 1 0.6587 1.8256 -1.4777 32 1 1.3710 3.1168 -3.6721 33 1 2.5368 2.0382 -4.4756 34 1 -0.0500 1.2207 -3.0810 35 1 0.2858 1.1594 -4.8279 36 1 1.1544 0.0743 -3.7160 37 1 2.4370 4.5056 -1.6204 38 1 4.3122 6.0865 -1.4112 39 1 7.0238 5.9991 -2.6868 40 1 7.0321 3.0030 -2.5770 41 1 5.1527 1.4258 -2.7746 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:59 Heat of formation + Delta-G solvation = -54.262603 kcal Electronic energy + Delta-G solvation = -20533.219661 eV Core-core repulsion = 17604.619030 eV Total energy + Delta-G solvation = -2928.600631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85712 -39.21858 -37.48917 -35.76532 -33.43713 -31.91789 -31.70805 -30.51097 -27.69345 -26.00396 -25.42653 -23.71034 -23.07661 -21.80970 -20.88959 -19.31904 -18.74410 -17.22802 -16.91111 -16.29995 -16.14322 -15.86332 -15.55819 -15.18343 -14.98105 -14.57981 -14.45321 -14.29480 -13.76971 -13.61423 -13.46247 -13.05089 -12.81729 -12.77267 -12.61053 -12.28236 -12.15273 -11.99594 -11.88925 -11.75773 -11.66284 -11.56617 -11.33506 -10.66927 -10.27376 -9.87489 -9.34819 -9.00417 -8.47351 -6.15268 0.32943 0.47167 1.54147 1.61157 1.79516 2.61102 2.74470 3.28993 3.31287 3.50419 3.89692 4.02064 4.08448 4.16766 4.23553 4.33355 4.38184 4.45119 4.52902 4.55929 4.66828 4.75821 4.88315 4.97029 5.00448 5.06950 5.13201 5.15243 5.23893 5.26786 5.34847 5.43458 5.46163 5.50119 5.57705 5.75544 5.97315 6.08183 6.27263 6.61324 6.83711 6.87502 6.89639 7.60321 8.88790 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.007420 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.433861 B = 3772.805254 C = 5052.039570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C 0.217 3.783 4 H -0.015 1.015 5 C -0.569 4.569 6 H 0.045 0.955 7 C -0.031 4.031 8 N -0.942 5.942 9 Si 1.104 2.896 10 H -0.291 1.291 11 H -0.279 1.279 12 H -0.268 1.268 13 N -0.671 5.671 14 C 0.124 3.876 15 H 0.030 0.970 16 C -0.110 4.110 17 C -0.152 4.152 18 C -0.086 4.086 19 C -0.076 4.076 20 C -0.161 4.161 21 C 0.091 3.909 22 O -0.509 6.509 23 C -0.154 4.154 24 C -0.115 4.115 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.256 0.744 31 H 0.339 0.661 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.408 0.592 40 H 0.143 0.857 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 3.890 -15.027 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.183 4.183 3 C 0.108 3.892 4 H 0.003 0.997 5 C -0.608 4.608 6 H 0.064 0.936 7 C -0.228 4.228 8 N -0.581 5.581 9 Si 0.928 3.072 10 H -0.217 1.217 11 H -0.205 1.205 12 H -0.193 1.193 13 N -0.304 5.304 14 C 0.014 3.986 15 H 0.048 0.952 16 C -0.147 4.147 17 C -0.209 4.209 18 C -0.087 4.087 19 C -0.094 4.094 20 C -0.180 4.180 21 C 0.047 3.953 22 O -0.322 6.322 23 C -0.173 4.173 24 C -0.133 4.133 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.266 0.734 40 H 0.161 0.839 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.572 4.306 -12.644 13.369 hybrid contribution 0.228 -0.913 -1.891 2.112 sum 0.800 3.393 -14.534 14.947 Atomic orbital electron populations 1.21515 0.94791 1.00347 1.01501 1.22070 0.97715 0.99981 0.98540 1.18979 0.92566 0.89005 0.88674 0.99696 1.22060 1.29948 1.16693 0.92106 0.93637 1.26898 0.95652 0.96571 1.03725 1.70916 1.23384 1.30143 1.33655 0.83087 0.75725 0.75589 0.72804 1.21652 1.20486 1.19333 1.60617 1.04779 1.62220 1.02828 1.20468 0.91628 0.94258 0.92294 0.95201 1.21600 0.98151 1.00373 0.94608 1.21821 0.98283 0.98282 1.02536 1.20088 0.94603 0.94992 0.98976 1.20932 0.99268 0.92926 0.96311 1.21604 0.92224 1.01200 1.02938 1.18519 0.86704 0.89871 1.00244 1.84782 1.49720 1.56816 1.40836 1.21494 1.00072 0.93428 1.02281 1.21099 0.91868 0.99983 1.00357 0.93328 0.92357 0.93249 0.94524 0.94795 0.93389 0.83931 0.91121 0.90377 0.93062 0.90372 0.93155 0.85791 0.84767 0.73357 0.83902 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.38 71.98 0.67 -4.18 16 2 C -0.14 -6.45 5.46 30.59 0.17 -6.29 16 3 C 0.22 10.62 1.75 44.17 0.08 10.70 16 4 H -0.01 -0.84 6.90 -2.39 -0.02 -0.86 16 5 C -0.57 -31.36 7.32 25.60 0.19 -31.17 16 6 H 0.05 2.54 7.83 -2.91 -0.02 2.52 16 7 C -0.03 -1.75 5.21 84.65 0.44 -1.31 16 8 N -0.94 -57.83 13.09 21.45 0.28 -57.55 16 9 Si 1.10 51.31 29.91 68.60 2.05 53.36 16 10 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 N -0.67 -26.77 5.29 -477.17 -2.52 -29.30 16 14 C 0.12 4.19 2.09 44.17 0.09 4.28 16 15 H 0.03 1.08 7.12 -2.39 -0.02 1.06 16 16 C -0.11 -2.80 5.53 30.60 0.17 -2.63 16 17 C -0.15 -3.42 9.60 71.98 0.69 -2.72 16 18 C -0.09 -3.01 4.45 -19.85 -0.09 -3.10 16 19 C -0.08 -2.71 9.31 22.25 0.21 -2.51 16 20 C -0.16 -5.26 9.99 22.36 0.22 -5.03 16 21 C 0.09 2.78 6.70 22.51 0.15 2.93 16 22 O -0.51 -13.15 13.50 -92.43 -1.25 -14.40 16 23 C -0.15 -4.60 9.99 22.37 0.22 -4.37 16 24 C -0.11 -3.66 9.66 22.25 0.22 -3.44 16 25 H 0.05 2.13 6.94 -2.39 -0.02 2.11 16 26 H 0.06 1.96 6.25 -2.38 -0.01 1.94 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.04 1.49 7.52 -2.38 -0.02 1.47 16 29 H 0.03 1.74 6.32 -2.39 -0.02 1.72 16 30 H 0.26 15.91 5.91 -92.71 -0.55 15.36 16 31 H 0.34 12.45 4.30 -89.70 -0.39 12.06 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.23 6.31 -2.39 -0.02 1.21 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 4.59 7.72 -2.91 -0.02 4.57 16 38 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 39 H 0.41 5.71 9.06 -74.06 -0.67 5.04 16 40 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 41 H 0.13 3.71 8.03 -2.91 -0.02 3.69 16 Total: -1.00 -67.36 326.61 2.18 -65.17 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.19 Total: 31.57 kcal Atomic # 6 Polarization: -52.29 SS G_CDS: 3.43 Total: -48.86 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -2.24 Total: -86.85 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -1.25 Total: -14.40 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.05 Total: 53.36 kcal Total: -67.36 2.18 -65.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.909 kcal (2) G-P(sol) polarization free energy of solvation -67.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds