Wall clock time and date at job start Mon Mar 30 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 H 1.09007 * 109.47092 * 55.71731 * 3 2 1 5 5 C 1.50695 * 109.47281 * 175.71815 * 3 2 1 6 6 H 1.07998 * 120.00147 * 120.00103 * 5 3 2 7 7 C 1.37886 * 120.00048 * 300.00104 * 5 3 2 8 8 N 1.31512 * 119.99335 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99932 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46953 * 90.00285 * 9 7 5 11 11 H 1.48506 * 109.47018 * 209.99811 * 9 7 5 12 12 H 1.48494 * 109.47480 * 330.00184 * 9 7 5 13 13 N 1.46902 * 109.47339 * 295.71857 * 3 2 1 14 14 C 1.46898 * 111.00239 * 160.65560 * 13 3 2 15 15 H 1.09004 * 109.46894 * 18.48827 * 14 13 3 16 16 C 1.53001 * 109.47651 * 258.48906 * 14 13 3 17 17 C 1.53003 * 109.46954 * 65.98752 * 16 14 13 18 18 C 1.50695 * 109.47034 * 138.48684 * 14 13 3 19 19 C 1.38265 * 119.94487 * 39.73021 * 18 14 13 20 20 C 1.38148 * 120.05782 * 179.72591 * 19 18 14 21 21 C 1.38736 * 119.94111 * 0.54099 * 20 19 18 22 22 O 1.35895 * 120.05346 * 179.74827 * 21 20 19 23 23 C 1.38735 * 119.88791 * 359.73543 * 21 20 19 24 24 C 1.38139 * 119.94536 * 359.97438 * 23 21 20 25 25 H 1.08998 * 109.46734 * 174.75707 * 1 2 3 26 26 H 1.08996 * 109.46988 * 294.75236 * 1 2 3 27 27 H 1.08994 * 109.47298 * 54.75717 * 1 2 3 28 28 H 1.08992 * 109.47072 * 120.00155 * 2 1 3 29 29 H 1.09001 * 109.46581 * 240.00652 * 2 1 3 30 30 H 0.97003 * 119.99652 * 179.97438 * 8 7 5 31 31 H 1.00899 * 111.00235 * 284.61240 * 13 3 2 32 32 H 1.08995 * 109.47308 * 185.99013 * 16 14 13 33 33 H 1.08995 * 109.47020 * 305.99537 * 16 14 13 34 34 H 1.08996 * 109.47349 * 300.64498 * 17 16 14 35 35 H 1.09002 * 109.47137 * 60.64050 * 17 16 14 36 36 H 1.08998 * 109.46903 * 180.63946 * 17 16 14 37 37 H 1.08004 * 119.97100 * 359.97438 * 19 18 14 38 38 H 1.07998 * 120.02986 * 180.27745 * 20 19 18 39 39 H 0.96706 * 114.00315 * 269.98027 * 22 21 20 40 40 H 1.08003 * 120.02429 * 179.97438 * 23 21 20 41 41 H 1.08003 * 119.97617 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6153 1.9780 0.8492 5 6 3.5432 1.4439 0.1061 6 1 4.1393 1.8918 -0.6753 7 6 4.1577 0.8734 1.2007 8 7 3.4317 0.3285 2.1523 9 14 6.0210 0.8746 1.3318 10 1 6.4670 2.1045 2.0343 11 1 6.4642 -0.3197 2.0951 12 1 6.6131 0.8398 -0.0295 13 7 1.6366 2.1045 -1.2478 14 6 1.6892 3.5660 -1.1092 15 1 2.3122 3.8277 -0.2539 16 6 0.2750 4.1094 -0.8953 17 6 -0.2629 3.6160 0.4493 18 6 2.2749 4.1684 -2.3602 19 6 1.9333 3.6562 -3.5982 20 6 2.4644 4.2102 -4.7469 21 6 3.3500 5.2743 -4.6568 22 8 3.8778 5.8178 -5.7850 23 6 3.6957 5.7828 -3.4132 24 6 3.1571 5.2291 -2.2679 25 1 -0.3633 -1.0234 -0.0939 26 1 -0.3633 0.4303 0.9332 27 1 -0.3633 0.5930 -0.8393 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8639 -0.0732 2.9223 31 1 2.2044 1.7940 -2.0219 32 1 0.3001 5.1991 -0.8988 33 1 -0.3742 3.7583 -1.6972 34 1 -0.2773 2.5261 0.4571 35 1 0.3800 3.9765 1.2523 36 1 -1.2747 3.9938 0.5966 37 1 1.2475 2.8247 -3.6675 38 1 2.1938 3.8126 -5.7138 39 1 4.7072 5.4087 -6.0680 40 1 4.3852 6.6109 -3.3405 41 1 3.4255 5.6248 -1.2995 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:02 Heat of formation + Delta-G solvation = -36.556552 kcal Electronic energy + Delta-G solvation = -20391.368151 eV Core-core repulsion = 17463.535312 eV Total energy + Delta-G solvation = -2927.832839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69920 -37.63684 -35.91870 -33.66033 -31.58730 -30.85833 -30.54420 -29.18721 -26.27307 -24.58373 -22.80181 -22.46837 -21.79078 -19.73256 -19.43173 -18.28663 -16.75588 -15.79638 -15.67260 -15.11102 -14.72498 -14.32224 -13.91832 -13.50714 -13.27202 -13.05483 -12.74544 -12.59372 -12.24510 -12.11570 -11.72309 -11.58835 -11.25095 -11.20422 -10.96489 -10.84887 -10.65318 -10.48300 -10.33748 -10.15720 -10.05329 -9.59398 -9.36150 -9.07474 -8.77688 -8.35861 -8.20099 -7.29418 -6.00410 -4.13109 1.43564 1.56696 3.24610 3.32450 3.35302 3.82088 4.34818 4.38319 5.02228 5.13800 5.15370 5.23510 5.33886 5.63243 5.75604 5.78188 5.84227 6.00293 6.10138 6.19518 6.34552 6.37910 6.47893 6.50871 6.55191 6.56519 6.59355 6.67834 6.74348 6.95361 6.99755 7.03965 7.14259 7.18777 7.43624 7.60745 7.71157 7.77577 8.07110 8.16737 8.33036 8.65193 8.99582 9.54648 10.99174 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.006728 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.582619 B = 4160.975822 C = 5188.895728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.211 3.789 4 H 0.043 0.957 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.127 3.873 15 H 0.067 0.933 16 C -0.099 4.099 17 C -0.152 4.152 18 C -0.079 4.079 19 C -0.092 4.092 20 C -0.147 4.147 21 C 0.087 3.913 22 O -0.504 6.504 23 C -0.146 4.146 24 C -0.098 4.098 25 H 0.023 0.977 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.328 0.672 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.038 0.962 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.385 0.615 40 H 0.122 0.878 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 6.975 -9.065 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C 0.104 3.896 4 H 0.061 0.939 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.310 5.310 14 C 0.017 3.983 15 H 0.085 0.915 16 C -0.137 4.137 17 C -0.210 4.210 18 C -0.080 4.080 19 C -0.110 4.110 20 C -0.165 4.165 21 C 0.043 3.957 22 O -0.314 6.314 23 C -0.165 4.165 24 C -0.117 4.117 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.240 0.760 40 H 0.140 0.860 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.540 7.191 -8.700 11.829 hybrid contribution 2.657 -0.157 0.087 2.663 sum -0.883 7.034 -8.613 11.155 Atomic orbital electron populations 1.21760 0.99010 0.98501 1.00428 1.21508 0.92091 0.99360 1.01665 1.19313 0.92503 0.91137 0.86681 0.93925 1.21901 0.92918 1.37857 1.05703 0.93001 1.24910 0.97718 0.95051 0.95728 1.69870 1.34778 1.38116 1.09524 0.86713 0.86417 0.77522 0.78044 1.20804 1.21188 1.20090 1.61081 1.58915 1.02294 1.08681 1.20460 0.94901 0.90007 0.92969 0.91532 1.21475 0.96026 0.98133 0.98079 1.21855 0.98868 1.03583 0.96657 1.20441 0.96123 0.95539 0.95905 1.20987 0.99347 0.99561 0.91097 1.21373 0.99623 0.96375 0.99135 1.18441 0.97419 0.94415 0.85453 1.84805 1.42982 1.61652 1.41917 1.21327 1.01902 1.01366 0.91904 1.21007 0.96555 0.96056 0.98084 0.95743 0.94434 0.92900 0.89181 0.95281 0.92924 0.85439 0.93421 0.92129 0.90396 0.93421 0.94268 0.84809 0.85898 0.75994 0.85978 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.82 37.16 0.33 -2.42 16 2 C -0.11 -2.48 5.45 -26.73 -0.15 -2.62 16 3 C 0.21 4.92 1.15 -68.87 -0.08 4.84 16 4 H 0.04 1.09 6.16 -51.92 -0.32 0.77 16 5 C -0.54 -14.18 8.12 -34.44 -0.28 -14.46 16 6 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.40 11.30 55.43 0.63 -23.77 16 9 Si 0.88 20.90 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.25 4.77 -102.17 -0.49 -13.74 16 14 C 0.13 2.26 2.17 -68.87 -0.15 2.12 16 15 H 0.07 1.36 7.20 -51.93 -0.37 0.99 16 16 C -0.10 -1.58 5.58 -26.73 -0.15 -1.73 16 17 C -0.15 -2.53 8.85 37.16 0.33 -2.20 16 18 C -0.08 -1.29 4.76 -104.60 -0.50 -1.78 16 19 C -0.09 -1.37 8.75 -39.60 -0.35 -1.71 16 20 C -0.15 -2.02 9.99 -39.43 -0.39 -2.41 16 21 C 0.09 1.20 6.71 -39.21 -0.26 0.94 16 22 O -0.50 -6.09 13.50 -19.41 -0.26 -6.35 16 23 C -0.15 -2.06 9.99 -39.43 -0.39 -2.45 16 24 C -0.10 -1.51 9.66 -39.61 -0.38 -1.89 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.74 7.57 -51.93 -0.39 0.34 16 27 H 0.05 0.99 7.52 -51.93 -0.39 0.60 16 28 H 0.09 2.34 5.97 -51.93 -0.31 2.03 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 31 H 0.33 6.50 7.01 -39.29 -0.28 6.23 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.43 4.72 -51.93 -0.25 1.19 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.13 1.92 7.51 -52.48 -0.39 1.53 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.39 2.85 9.06 45.56 0.41 3.26 16 40 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 41 H 0.12 1.80 8.03 -52.48 -0.42 1.38 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -27.89 327.55 -8.36 -36.26 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.64 Total: 10.85 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.52 Total: -24.06 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.14 Total: -37.51 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.26 Total: -6.35 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.89 -8.36 -36.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.300 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds