Wall clock time and date at job start Mon Mar 30 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 H 1.09007 * 109.47092 * 55.71731 * 3 2 1 5 5 C 1.50695 * 109.47281 * 175.71815 * 3 2 1 6 6 H 1.07998 * 120.00147 * 120.00103 * 5 3 2 7 7 C 1.37886 * 120.00048 * 300.00104 * 5 3 2 8 8 N 1.31512 * 119.99335 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99932 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46953 * 90.00285 * 9 7 5 11 11 H 1.48506 * 109.47018 * 209.99811 * 9 7 5 12 12 H 1.48494 * 109.47480 * 330.00184 * 9 7 5 13 13 N 1.46902 * 109.47339 * 295.71857 * 3 2 1 14 14 C 1.46898 * 111.00239 * 160.65560 * 13 3 2 15 15 H 1.09004 * 109.46894 * 18.48827 * 14 13 3 16 16 C 1.53001 * 109.47651 * 258.48906 * 14 13 3 17 17 C 1.53003 * 109.46954 * 65.98752 * 16 14 13 18 18 C 1.50695 * 109.47034 * 138.48684 * 14 13 3 19 19 C 1.38265 * 119.94487 * 39.73021 * 18 14 13 20 20 C 1.38148 * 120.05782 * 179.72591 * 19 18 14 21 21 C 1.38736 * 119.94111 * 0.54099 * 20 19 18 22 22 O 1.35895 * 120.05346 * 179.74827 * 21 20 19 23 23 C 1.38735 * 119.88791 * 359.73543 * 21 20 19 24 24 C 1.38139 * 119.94536 * 359.97438 * 23 21 20 25 25 H 1.08998 * 109.46734 * 174.75707 * 1 2 3 26 26 H 1.08996 * 109.46988 * 294.75236 * 1 2 3 27 27 H 1.08994 * 109.47298 * 54.75717 * 1 2 3 28 28 H 1.08992 * 109.47072 * 120.00155 * 2 1 3 29 29 H 1.09001 * 109.46581 * 240.00652 * 2 1 3 30 30 H 0.97003 * 119.99652 * 179.97438 * 8 7 5 31 31 H 1.00899 * 111.00235 * 284.61240 * 13 3 2 32 32 H 1.08995 * 109.47308 * 185.99013 * 16 14 13 33 33 H 1.08995 * 109.47020 * 305.99537 * 16 14 13 34 34 H 1.08996 * 109.47349 * 300.64498 * 17 16 14 35 35 H 1.09002 * 109.47137 * 60.64050 * 17 16 14 36 36 H 1.08998 * 109.46903 * 180.63946 * 17 16 14 37 37 H 1.08004 * 119.97100 * 359.97438 * 19 18 14 38 38 H 1.07998 * 120.02986 * 180.27745 * 20 19 18 39 39 H 0.96706 * 114.00315 * 269.98027 * 22 21 20 40 40 H 1.08003 * 120.02429 * 179.97438 * 23 21 20 41 41 H 1.08003 * 119.97617 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6153 1.9780 0.8492 5 6 3.5432 1.4439 0.1061 6 1 4.1393 1.8918 -0.6753 7 6 4.1577 0.8734 1.2007 8 7 3.4317 0.3285 2.1523 9 14 6.0210 0.8746 1.3318 10 1 6.4670 2.1045 2.0343 11 1 6.4642 -0.3197 2.0951 12 1 6.6131 0.8398 -0.0295 13 7 1.6366 2.1045 -1.2478 14 6 1.6892 3.5660 -1.1092 15 1 2.3122 3.8277 -0.2539 16 6 0.2750 4.1094 -0.8953 17 6 -0.2629 3.6160 0.4493 18 6 2.2749 4.1684 -2.3602 19 6 1.9333 3.6562 -3.5982 20 6 2.4644 4.2102 -4.7469 21 6 3.3500 5.2743 -4.6568 22 8 3.8778 5.8178 -5.7850 23 6 3.6957 5.7828 -3.4132 24 6 3.1571 5.2291 -2.2679 25 1 -0.3633 -1.0234 -0.0939 26 1 -0.3633 0.4303 0.9332 27 1 -0.3633 0.5930 -0.8393 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8639 -0.0732 2.9223 31 1 2.2044 1.7940 -2.0219 32 1 0.3001 5.1991 -0.8988 33 1 -0.3742 3.7583 -1.6972 34 1 -0.2773 2.5261 0.4571 35 1 0.3800 3.9765 1.2523 36 1 -1.2747 3.9938 0.5966 37 1 1.2475 2.8247 -3.6675 38 1 2.1938 3.8126 -5.7138 39 1 4.7072 5.4087 -6.0680 40 1 4.3852 6.6109 -3.3405 41 1 3.4255 5.6248 -1.2995 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:02 Heat of formation + Delta-G solvation = -53.310581 kcal Electronic energy + Delta-G solvation = -20392.094660 eV Core-core repulsion = 17463.535312 eV Total energy + Delta-G solvation = -2928.559348 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84183 -38.94713 -37.27439 -35.27663 -33.48075 -32.13834 -31.82032 -30.54176 -28.07355 -26.05321 -24.46791 -23.72558 -22.96985 -21.32232 -21.01069 -19.29893 -18.66867 -17.12509 -17.04759 -16.50802 -16.19863 -15.67463 -15.28287 -15.09236 -14.69172 -14.45977 -14.24383 -13.96565 -13.62343 -13.42593 -13.22120 -13.08631 -12.97834 -12.77109 -12.65977 -12.54284 -12.22168 -12.15953 -11.69565 -11.56429 -11.43083 -11.32414 -11.06639 -10.94158 -10.38086 -9.89005 -9.35970 -9.00870 -8.01957 -6.23175 0.31751 0.45059 1.35335 1.38303 1.46145 2.40401 2.72432 3.17231 3.36084 3.66690 3.88901 4.04663 4.11074 4.40478 4.47559 4.54178 4.58461 4.66561 4.73774 4.83709 4.93263 4.97532 4.99604 5.13554 5.17267 5.19633 5.27197 5.35966 5.42974 5.49079 5.49349 5.56923 5.61548 5.68624 5.76052 5.88891 5.94601 6.17736 6.27458 6.45099 6.87819 6.89705 7.06693 7.47881 8.93146 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.006728 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.582619 B = 4160.975822 C = 5188.895728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.222 3.778 4 H 0.018 0.982 5 C -0.554 4.554 6 H 0.043 0.957 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.940 3.060 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.666 5.666 14 C 0.132 3.868 15 H 0.033 0.967 16 C -0.092 4.092 17 C -0.149 4.149 18 C -0.099 4.099 19 C -0.094 4.094 20 C -0.147 4.147 21 C 0.092 3.908 22 O -0.508 6.508 23 C -0.150 4.150 24 C -0.110 4.110 25 H 0.041 0.959 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.260 0.740 31 H 0.327 0.673 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.062 0.938 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.408 0.592 40 H 0.140 0.860 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 7.711 -10.885 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.036 0.964 5 C -0.593 4.593 6 H 0.062 0.938 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.295 5.295 14 C 0.022 3.978 15 H 0.051 0.949 16 C -0.130 4.130 17 C -0.207 4.207 18 C -0.100 4.100 19 C -0.112 4.112 20 C -0.166 4.166 21 C 0.048 3.952 22 O -0.321 6.321 23 C -0.168 4.168 24 C -0.129 4.129 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.266 0.734 40 H 0.158 0.842 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.513 7.931 -10.539 13.649 hybrid contribution 2.683 -0.325 0.580 2.764 sum -0.829 7.606 -9.959 12.558 Atomic orbital electron populations 1.21603 0.96284 0.99803 1.00612 1.21371 0.94496 0.98611 0.99827 1.19049 0.90869 0.91373 0.87423 0.96415 1.22198 0.94522 1.37247 1.05348 0.93843 1.25563 1.01395 0.95071 0.95675 1.69991 1.36086 1.38839 1.09892 0.85835 0.82078 0.77438 0.77933 1.20593 1.20915 1.19821 1.61024 1.58184 1.03387 1.06899 1.20371 0.95703 0.88865 0.92879 0.94910 1.21422 0.94805 0.98901 0.97864 1.21807 1.00006 1.02269 0.96572 1.20312 0.97481 0.96637 0.95538 1.21030 0.99540 0.99693 0.90971 1.21591 0.99150 0.96206 0.99609 1.18530 0.96978 0.93844 0.85850 1.84749 1.44417 1.61914 1.41018 1.21516 1.01970 1.01750 0.91609 1.21092 0.96765 0.96252 0.98776 0.93985 0.94918 0.91815 0.92318 0.95683 0.93039 0.85547 0.91995 0.91198 0.92336 0.95005 0.91857 0.84456 0.83762 0.73360 0.84214 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 8.82 71.98 0.64 -4.23 16 2 C -0.10 -4.87 5.45 30.60 0.17 -4.70 16 3 C 0.22 10.54 1.15 44.17 0.05 10.59 16 4 H 0.02 0.95 6.16 -2.38 -0.01 0.93 16 5 C -0.55 -29.43 8.12 25.60 0.21 -29.22 16 6 H 0.04 2.33 7.81 -2.91 -0.02 2.31 16 7 C 0.02 1.24 5.29 84.66 0.45 1.69 16 8 N -0.91 -51.29 11.30 21.45 0.24 -51.05 16 9 Si 0.94 43.32 29.54 68.60 2.03 45.35 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.67 -26.08 4.77 -477.16 -2.27 -28.35 16 14 C 0.13 4.74 2.17 44.17 0.10 4.84 16 15 H 0.03 1.40 7.20 -2.39 -0.02 1.38 16 16 C -0.09 -2.87 5.58 30.60 0.17 -2.70 16 17 C -0.15 -4.93 8.85 71.98 0.64 -4.29 16 18 C -0.10 -3.15 4.76 -19.85 -0.09 -3.24 16 19 C -0.09 -2.66 8.75 22.25 0.19 -2.46 16 20 C -0.15 -3.69 9.99 22.37 0.22 -3.47 16 21 C 0.09 2.32 6.71 22.51 0.15 2.47 16 22 O -0.51 -10.63 13.50 -92.37 -1.25 -11.87 16 23 C -0.15 -3.93 9.99 22.37 0.22 -3.71 16 24 C -0.11 -3.30 9.66 22.25 0.22 -3.08 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 27 H 0.06 2.31 7.52 -2.39 -0.02 2.29 16 28 H 0.06 3.12 5.97 -2.39 -0.01 3.11 16 29 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.33 12.94 7.01 -89.69 -0.63 12.31 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 2.16 4.72 -2.39 -0.01 2.14 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.14 3.72 7.51 -2.91 -0.02 3.70 16 38 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.41 4.62 9.06 -74.05 -0.67 3.95 16 40 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 41 H 0.12 3.60 8.03 -2.91 -0.02 3.57 16 Total: -1.00 -59.65 327.55 1.80 -57.85 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.27 Total: 29.59 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 3.33 Total: -41.51 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.03 Total: -79.40 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.25 Total: -11.87 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -59.65 1.80 -57.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.537 kcal (2) G-P(sol) polarization free energy of solvation -59.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds