Wall clock time and date at job start Mon Mar 30 2020 06:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47379 * 2 1 4 4 H 1.09003 * 109.46779 * 57.30799 * 3 2 1 5 5 C 1.50693 * 109.47053 * 177.31165 * 3 2 1 6 6 H 1.08003 * 119.99808 * 115.52052 * 5 3 2 7 7 C 1.37873 * 120.00198 * 295.50808 * 5 3 2 8 8 N 1.31520 * 120.00149 * 351.85944 * 7 5 3 9 9 Si 1.86801 * 120.00156 * 171.85636 * 7 5 3 10 10 H 1.48503 * 109.47239 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.46842 * 300.00160 * 9 7 5 12 12 H 1.48493 * 109.47019 * 60.00426 * 9 7 5 13 13 N 1.46900 * 109.46725 * 297.31261 * 3 2 1 14 14 C 1.46904 * 110.99685 * 158.82617 * 13 3 2 15 15 H 1.09005 * 109.47011 * 7.47899 * 14 13 3 16 16 C 1.52998 * 109.47047 * 247.48089 * 14 13 3 17 17 C 1.53006 * 109.47127 * 65.08430 * 16 14 13 18 18 C 1.50692 * 109.47337 * 127.48271 * 14 13 3 19 19 C 1.38172 * 120.02809 * 24.71903 * 18 14 13 20 20 C 1.38246 * 120.05589 * 179.77137 * 19 18 14 21 21 C 1.38295 * 120.11062 * 0.50997 * 20 19 18 22 22 C 1.38119 * 120.05230 * 359.74569 * 21 20 19 23 23 C 1.38710 * 120.03304 * 205.00089 * 18 14 13 24 24 O 1.35907 * 120.05069 * 359.97438 * 23 18 14 25 25 H 1.09005 * 109.47373 * 304.59271 * 1 2 3 26 26 H 1.09010 * 109.46996 * 64.58812 * 1 2 3 27 27 H 1.08994 * 109.47237 * 184.58668 * 1 2 3 28 28 H 1.08998 * 109.47145 * 240.00328 * 2 1 3 29 29 H 1.09002 * 109.47177 * 119.99959 * 2 1 3 30 30 H 0.97001 * 119.99437 * 354.80895 * 8 7 5 31 31 H 1.00894 * 110.99869 * 282.77439 * 13 3 2 32 32 H 1.08994 * 109.47578 * 185.08345 * 16 14 13 33 33 H 1.09003 * 109.47455 * 305.08724 * 16 14 13 34 34 H 1.08997 * 109.46982 * 293.68603 * 17 16 14 35 35 H 1.09003 * 109.47135 * 53.69066 * 17 16 14 36 36 H 1.09005 * 109.46780 * 173.68380 * 17 16 14 37 37 H 1.07996 * 119.96930 * 0.02774 * 19 18 14 38 38 H 1.07997 * 119.94175 * 180.25562 * 20 19 18 39 39 H 1.07991 * 119.97009 * 179.77180 * 21 20 19 40 40 H 1.08002 * 120.02384 * 180.02562 * 22 21 20 41 41 H 0.96693 * 114.00437 * 89.99942 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6378 1.9701 0.8649 5 6 3.5455 1.4430 0.0666 6 1 4.1224 1.8329 -0.7589 7 6 4.1864 0.9459 1.1816 8 7 3.4910 0.6204 2.2494 9 14 6.0424 0.7347 1.1756 10 1 6.4825 0.1867 2.4838 11 1 6.4304 -0.2025 0.0911 12 1 6.6896 2.0515 0.9471 13 7 1.6041 2.1160 -1.2306 14 6 1.6193 3.5756 -1.0656 15 1 2.0776 3.8284 -0.1094 16 6 0.1852 4.1077 -1.1002 17 6 -0.5863 3.5735 0.1083 18 6 2.4136 4.1994 -2.1840 19 6 2.5527 3.5350 -3.3874 20 6 3.2773 4.1088 -4.4154 21 6 3.8735 5.3441 -4.2387 22 6 3.7417 6.0099 -3.0358 23 6 3.0106 5.4385 -2.0043 24 8 2.8796 6.0917 -0.8197 25 1 -0.3634 0.5835 0.8460 26 1 -0.3633 0.4410 -0.9283 27 1 -0.3633 -1.0243 0.0822 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5382 0.7997 2.2809 31 1 2.1708 1.8351 -2.0167 32 1 0.2009 5.1971 -1.0686 33 1 -0.3027 3.7779 -2.0174 34 1 -0.6990 2.4931 0.0188 35 1 -0.0387 3.8074 1.0213 36 1 -1.5709 4.0397 0.1457 37 1 2.0915 2.5684 -3.5264 38 1 3.3814 3.5897 -5.3567 39 1 4.4421 5.7886 -5.0420 40 1 4.2071 6.9748 -2.8984 41 1 3.5726 5.8852 -0.1778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:13 Heat of formation + Delta-G solvation = -53.170408 kcal Electronic energy + Delta-G solvation = -20855.799636 eV Core-core repulsion = 17927.246366 eV Total energy + Delta-G solvation = -2928.553270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07635 -38.60837 -37.48730 -35.86244 -33.51032 -32.50355 -31.22928 -30.63192 -27.79002 -26.22994 -24.81011 -23.50897 -23.08031 -21.64309 -21.08145 -19.48298 -18.91623 -17.42621 -16.92814 -16.28197 -15.94388 -15.72144 -15.42659 -15.23779 -15.10079 -14.80802 -14.32992 -14.10517 -13.71843 -13.39201 -13.28568 -13.01290 -12.93272 -12.63651 -12.54643 -12.40209 -12.30702 -12.04698 -11.96006 -11.75494 -11.57013 -11.42760 -11.14329 -10.85798 -10.43594 -9.75782 -9.45594 -9.11819 -8.46828 -6.30088 0.33125 0.41145 1.48925 1.54516 1.73997 2.54897 2.71871 3.18994 3.37122 3.53734 3.76250 4.01501 4.17023 4.31937 4.34000 4.43933 4.46314 4.55346 4.60870 4.65376 4.76205 4.81507 4.93077 5.00419 5.04772 5.10903 5.13260 5.20590 5.31795 5.39360 5.42463 5.45508 5.53201 5.57527 5.61322 5.69877 5.94896 6.00805 6.06502 6.55582 6.61354 6.75937 6.83546 7.49946 8.79064 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.008215 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.103030 B = 3407.717860 C = 4340.750216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.213 3.787 4 H -0.001 1.001 5 C -0.627 4.627 6 H 0.037 0.963 7 C -0.019 4.019 8 N -0.930 5.930 9 Si 1.100 2.900 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.277 1.277 13 N -0.665 5.665 14 C 0.144 3.856 15 H 0.033 0.967 16 C -0.088 4.088 17 C -0.142 4.142 18 C -0.125 4.125 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.151 4.151 23 C 0.087 3.913 24 O -0.508 6.508 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.064 0.936 37 H 0.132 0.868 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 7.984 -11.571 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.104 3.896 4 H 0.017 0.983 5 C -0.666 4.666 6 H 0.056 0.944 7 C -0.219 4.219 8 N -0.567 5.567 9 Si 0.923 3.077 10 H -0.212 1.212 11 H -0.200 1.200 12 H -0.202 1.202 13 N -0.296 5.296 14 C 0.033 3.967 15 H 0.051 0.949 16 C -0.126 4.126 17 C -0.199 4.199 18 C -0.127 4.127 19 C -0.133 4.133 20 C -0.144 4.144 21 C -0.128 4.128 22 C -0.169 4.169 23 C 0.043 3.957 24 O -0.320 6.320 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.151 0.849 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.149 0.851 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.161 0.839 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.477 7.595 -10.776 13.266 hybrid contribution 0.184 0.435 -0.042 0.474 sum -1.293 8.030 -10.818 13.534 Atomic orbital electron populations 1.21606 0.95375 0.99960 1.01356 1.21414 0.95418 0.98300 0.99174 1.19105 0.91653 0.90908 0.87920 0.98329 1.22902 0.93978 1.45232 1.04465 0.94430 1.26852 1.09707 0.93252 0.92116 1.70891 1.09758 1.46088 1.29953 0.83148 0.71111 0.77227 0.76167 1.21219 1.20041 1.20226 1.61023 1.57836 1.04212 1.06502 1.20156 0.94353 0.88088 0.94064 0.94882 1.21358 0.93811 0.98531 0.98923 1.21711 0.99341 1.02037 0.96826 1.20775 0.99981 0.94757 0.97155 1.21104 0.99505 1.00172 0.92544 1.21469 0.97306 0.96161 0.99459 1.21369 0.99321 0.94895 0.97201 1.21626 0.99669 1.01590 0.94059 1.18570 0.98426 0.91172 0.87579 1.84719 1.54909 1.67940 1.24423 0.94548 0.91602 0.93410 0.94267 0.94909 0.92902 0.84890 0.92709 0.91596 0.92161 0.95332 0.91701 0.85060 0.83163 0.82581 0.83941 0.74434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.79 71.98 0.63 -4.14 16 2 C -0.10 -4.80 5.33 30.60 0.16 -4.64 16 3 C 0.21 10.29 1.34 44.17 0.06 10.35 16 4 H 0.00 -0.06 6.80 -2.39 -0.02 -0.08 16 5 C -0.63 -33.69 8.29 25.60 0.21 -33.48 16 6 H 0.04 2.04 7.78 -2.91 -0.02 2.02 16 7 C -0.02 -1.06 5.20 84.65 0.44 -0.62 16 8 N -0.93 -55.19 12.80 21.45 0.27 -54.91 16 9 Si 1.10 49.71 29.91 68.60 2.05 51.77 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.66 -26.87 5.02 -477.15 -2.39 -29.27 16 14 C 0.14 5.50 1.86 44.17 0.08 5.59 16 15 H 0.03 1.51 6.88 -2.38 -0.02 1.49 16 16 C -0.09 -2.99 5.59 30.60 0.17 -2.82 16 17 C -0.14 -4.78 9.42 71.98 0.68 -4.10 16 18 C -0.13 -4.32 5.03 -19.77 -0.10 -4.42 16 19 C -0.11 -3.48 8.85 22.26 0.20 -3.28 16 20 C -0.13 -3.06 10.04 22.29 0.22 -2.83 16 21 C -0.11 -2.47 10.04 22.25 0.22 -2.25 16 22 C -0.15 -3.95 9.99 22.36 0.22 -3.73 16 23 C 0.09 2.81 6.68 22.50 0.15 2.96 16 24 O -0.51 -16.11 12.64 -92.51 -1.17 -17.27 16 25 H 0.04 1.39 7.41 -2.38 -0.02 1.37 16 26 H 0.07 2.35 7.64 -2.38 -0.02 2.33 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.03 1.69 6.35 -2.39 -0.02 1.68 16 30 H 0.26 15.67 6.26 -92.71 -0.58 15.09 16 31 H 0.33 13.29 5.50 -89.70 -0.49 12.80 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.14 5.95 -2.39 -0.01 2.12 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.13 3.89 6.37 -2.91 -0.02 3.87 16 38 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.16 2.38 8.06 -2.92 -0.02 2.35 16 40 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 41 H 0.40 10.57 9.06 -74.06 -0.67 9.90 16 Total: -1.00 -63.00 327.17 2.17 -60.83 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: 0.05 Total: 36.27 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 3.36 Total: -47.41 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.12 Total: -84.18 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -1.17 Total: -17.27 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.77 kcal Total: -63.00 2.17 -60.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.655 kcal (2) G-P(sol) polarization free energy of solvation -62.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds