Wall clock time and date at job start Mon Mar 30 2020 06:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46743 * 2 1 4 4 H 1.09006 * 109.47097 * 53.77753 * 3 2 1 5 5 C 1.50703 * 109.47280 * 173.77066 * 3 2 1 6 6 H 1.07995 * 119.99769 * 114.54996 * 5 3 2 7 7 C 1.37871 * 120.00329 * 294.55559 * 5 3 2 8 8 N 1.31519 * 120.00233 * 347.48732 * 7 5 3 9 9 Si 1.86803 * 120.00295 * 167.48502 * 7 5 3 10 10 H 1.48498 * 109.46867 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47007 * 119.99971 * 9 7 5 12 12 H 1.48500 * 109.47077 * 240.00179 * 9 7 5 13 13 N 1.46897 * 109.47286 * 293.77379 * 3 2 1 14 14 C 1.46901 * 111.00059 * 152.16151 * 13 3 2 15 15 H 1.08998 * 109.47267 * 37.46144 * 14 13 3 16 16 C 1.52996 * 109.47492 * 277.45968 * 14 13 3 17 17 C 1.50704 * 109.46816 * 157.45588 * 14 13 3 18 18 C 1.38163 * 120.02932 * 24.72971 * 17 14 13 19 19 C 1.38245 * 120.05808 * 179.74691 * 18 17 14 20 20 C 1.38297 * 120.10622 * 0.54770 * 19 18 17 21 21 C 1.50693 * 119.96884 * 179.72652 * 20 19 18 22 22 C 1.38125 * 120.05457 * 359.70190 * 20 19 18 23 23 C 1.38715 * 120.02724 * 204.99975 * 17 14 13 24 24 O 1.35904 * 120.05274 * 359.95947 * 23 17 14 25 25 H 1.09007 * 109.46934 * 185.84653 * 1 2 3 26 26 H 1.08998 * 109.47651 * 305.84205 * 1 2 3 27 27 H 1.09002 * 109.46941 * 65.85081 * 1 2 3 28 28 H 1.08990 * 109.47573 * 240.00311 * 2 1 3 29 29 H 1.09002 * 109.47080 * 119.99699 * 2 1 3 30 30 H 0.97011 * 119.99506 * 1.24259 * 8 7 5 31 31 H 1.00902 * 110.99709 * 28.21043 * 13 3 2 32 32 H 1.08995 * 109.47301 * 185.02823 * 16 14 13 33 33 H 1.09003 * 109.46936 * 305.02570 * 16 14 13 34 34 H 1.08994 * 109.47202 * 65.01888 * 16 14 13 35 35 H 1.07998 * 119.97019 * 0.02562 * 18 17 14 36 36 H 1.07990 * 119.94932 * 180.25122 * 19 18 17 37 37 H 1.09002 * 109.47265 * 269.97806 * 21 20 19 38 38 H 1.09002 * 109.47739 * 29.97889 * 21 20 19 39 39 H 1.08999 * 109.46987 * 149.97629 * 21 20 19 40 40 H 1.08001 * 120.02089 * 180.02562 * 22 20 19 41 41 H 0.96696 * 113.99821 * 90.00167 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5884 1.9875 0.8291 5 6 3.5390 1.4455 0.1542 6 1 4.1638 1.8041 -0.6504 7 6 4.1128 0.9903 1.3222 8 7 3.3664 0.7866 2.3858 9 14 5.9505 0.6626 1.3943 10 1 6.5597 0.9672 0.0747 11 1 6.5664 1.5241 2.4351 12 1 6.1860 -0.7647 1.7300 13 7 1.6767 2.0903 -1.2674 14 6 1.5286 3.5415 -1.0935 15 1 2.2821 3.9023 -0.3933 16 6 0.1339 3.8499 -0.5455 17 6 1.7090 4.2277 -2.4231 18 6 1.4628 3.5394 -3.5955 19 6 1.6230 4.1698 -4.8153 20 6 2.0410 5.4872 -4.8657 21 6 2.2206 6.1695 -6.1973 22 6 2.2935 6.1780 -3.6966 23 6 2.1279 5.5492 -2.4710 24 8 2.3753 6.2269 -1.3193 25 1 -0.3633 -1.0224 0.1047 26 1 -0.3634 0.6017 0.8330 27 1 -0.3633 0.4204 -0.9378 28 1 1.8933 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.4094 0.9395 2.3432 31 1 0.8371 1.6849 -1.6531 32 1 -0.0083 4.9296 -0.5005 33 1 -0.6190 3.4112 -1.2004 34 1 0.0352 3.4284 0.4548 35 1 1.1404 2.5093 -3.5588 36 1 1.4261 3.6314 -5.7304 37 1 3.2429 6.0227 -6.5458 38 1 1.5254 5.7434 -6.9207 39 1 2.0234 7.2359 -6.0885 40 1 2.6195 7.2069 -3.7366 41 1 3.2884 6.1555 -1.0093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:36 Heat of formation + Delta-G solvation = -37.660325 kcal Electronic energy + Delta-G solvation = -20323.325992 eV Core-core repulsion = 17395.445290 eV Total energy + Delta-G solvation = -2927.880702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.83140 -37.02691 -36.59038 -34.08199 -31.89600 -31.12996 -29.67633 -28.64719 -26.53459 -25.66370 -23.04753 -22.53353 -21.99824 -20.03021 -19.86640 -17.68792 -16.66864 -15.86336 -15.74748 -15.00351 -14.65753 -14.14562 -13.72496 -13.68628 -13.46472 -13.27079 -12.99260 -12.62412 -12.51200 -12.34561 -12.07783 -11.86165 -11.48929 -11.35572 -11.20633 -11.19769 -10.71403 -10.53098 -10.47450 -10.29437 -10.09223 -9.92912 -9.75518 -8.71009 -8.51316 -8.31125 -8.12503 -7.28688 -6.29451 -3.97844 1.49850 1.60105 3.46298 3.48943 3.64281 3.84356 4.49119 4.54941 4.90660 5.02014 5.09380 5.28675 5.37000 5.42236 5.53370 5.55951 5.71856 5.75318 5.84538 5.90020 5.90906 5.95555 6.12070 6.14129 6.14897 6.29102 6.42844 6.51389 6.59747 6.63052 6.73782 6.82481 6.89610 6.91961 7.10041 7.19033 7.38387 7.91594 8.05046 8.15915 8.47324 8.72733 8.96704 9.71057 11.05672 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.005768 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.064701 B = 4853.391303 C = 5384.003935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.208 3.792 4 H -0.002 1.002 5 C -0.578 4.578 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.672 5.672 14 C 0.132 3.868 15 H 0.092 0.908 16 C -0.169 4.169 17 C -0.082 4.082 18 C -0.079 4.079 19 C -0.134 4.134 20 C -0.088 4.088 21 C -0.110 4.110 22 C -0.150 4.150 23 C 0.106 3.894 24 O -0.499 6.499 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.269 0.731 31 H 0.316 0.684 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 7.759 -12.129 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C 0.100 3.900 4 H 0.015 0.985 5 C -0.616 4.616 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.551 5.551 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.214 1.214 13 N -0.302 5.302 14 C 0.022 3.978 15 H 0.110 0.890 16 C -0.228 4.228 17 C -0.083 4.083 18 C -0.097 4.097 19 C -0.152 4.152 20 C -0.088 4.088 21 C -0.166 4.166 22 C -0.169 4.169 23 C 0.062 3.938 24 O -0.309 6.309 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.019 7.442 -11.371 13.921 hybrid contribution -1.555 0.372 -0.409 1.650 sum -4.574 7.814 -11.780 14.857 Atomic orbital electron populations 1.21898 0.98855 1.00134 1.00119 1.21843 0.92023 1.00659 1.02037 1.19295 0.96411 0.89161 0.85088 0.98492 1.21977 0.90836 1.45671 1.03152 0.92670 1.25727 1.06542 0.94368 0.91981 1.70765 1.07829 1.47326 1.29175 0.83551 0.74737 0.76763 0.75122 1.21547 1.21700 1.21429 1.60769 1.37956 1.00951 1.30553 1.20182 0.96055 0.89545 0.92059 0.88953 1.22421 0.97571 1.01770 1.01061 1.20377 0.99077 0.92340 0.96496 1.20901 0.98063 0.99793 0.90945 1.21013 1.01974 0.94363 0.97854 1.19659 1.00005 0.94417 0.94714 1.20738 1.02016 1.00007 0.93868 1.21135 1.04022 1.00276 0.91461 1.18282 1.00195 0.90004 0.85360 1.84772 1.34368 1.72577 1.39172 0.93989 0.93721 0.94009 0.92888 0.91252 0.92032 0.86654 0.92428 0.93395 0.92433 0.85277 0.86376 0.91405 0.91739 0.91900 0.86095 0.75435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.66 37.16 0.36 -2.42 16 2 C -0.13 -2.83 5.23 -26.73 -0.14 -2.97 16 3 C 0.21 4.99 1.44 -68.86 -0.10 4.89 16 4 H 0.00 -0.06 6.19 -51.93 -0.32 -0.39 16 5 C -0.58 -15.84 8.54 -34.44 -0.29 -16.14 16 6 H 0.05 1.58 7.85 -52.49 -0.41 1.17 16 7 C 0.02 0.49 5.09 -17.82 -0.09 0.40 16 8 N -0.91 -26.84 13.00 55.43 0.72 -26.12 16 9 Si 1.07 25.24 29.92 -169.99 -5.09 20.16 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 N -0.67 -13.82 5.11 -102.17 -0.52 -14.34 16 14 C 0.13 2.52 2.34 -68.86 -0.16 2.36 16 15 H 0.09 2.01 7.31 -51.93 -0.38 1.63 16 16 C -0.17 -2.93 9.13 37.16 0.34 -2.59 16 17 C -0.08 -1.41 5.07 -104.47 -0.53 -1.94 16 18 C -0.08 -1.25 9.31 -39.61 -0.37 -1.62 16 19 C -0.13 -1.84 9.70 -39.56 -0.38 -2.22 16 20 C -0.09 -1.15 5.88 -104.65 -0.62 -1.76 16 21 C -0.11 -1.05 10.01 36.00 0.36 -0.69 16 22 C -0.15 -2.12 9.64 -39.44 -0.38 -2.50 16 23 C 0.11 1.71 6.68 -39.22 -0.26 1.45 16 24 O -0.50 -7.63 12.64 -19.44 -0.25 -7.87 16 25 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.68 6.69 -51.93 -0.35 0.34 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.73 6.62 -51.93 -0.34 1.39 16 30 H 0.27 7.86 6.36 -40.82 -0.26 7.60 16 31 H 0.32 5.90 5.64 -39.29 -0.22 5.68 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.06 1.05 7.36 -51.93 -0.38 0.67 16 35 H 0.13 2.01 6.81 -52.49 -0.36 1.65 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.39 4.65 9.06 45.56 0.41 5.06 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -30.28 330.65 -8.04 -38.32 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.62 Total: 10.62 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -2.27 Total: -25.74 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.20 Total: -40.47 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.25 Total: -7.87 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.09 Total: 20.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.28 -8.04 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.657 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds