Wall clock time and date at job start Mon Mar 30 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46743 * 2 1 4 4 H 1.09006 * 109.47097 * 53.77753 * 3 2 1 5 5 C 1.50703 * 109.47280 * 173.77066 * 3 2 1 6 6 H 1.07995 * 119.99769 * 114.54996 * 5 3 2 7 7 C 1.37871 * 120.00329 * 294.55559 * 5 3 2 8 8 N 1.31519 * 120.00233 * 347.48732 * 7 5 3 9 9 Si 1.86803 * 120.00295 * 167.48502 * 7 5 3 10 10 H 1.48498 * 109.46867 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47007 * 119.99971 * 9 7 5 12 12 H 1.48500 * 109.47077 * 240.00179 * 9 7 5 13 13 N 1.46897 * 109.47286 * 293.77379 * 3 2 1 14 14 C 1.46901 * 111.00059 * 152.16151 * 13 3 2 15 15 H 1.08998 * 109.47267 * 37.46144 * 14 13 3 16 16 C 1.52996 * 109.47492 * 277.45968 * 14 13 3 17 17 C 1.50704 * 109.46816 * 157.45588 * 14 13 3 18 18 C 1.38163 * 120.02932 * 24.72971 * 17 14 13 19 19 C 1.38245 * 120.05808 * 179.74691 * 18 17 14 20 20 C 1.38297 * 120.10622 * 0.54770 * 19 18 17 21 21 C 1.50693 * 119.96884 * 179.72652 * 20 19 18 22 22 C 1.38125 * 120.05457 * 359.70190 * 20 19 18 23 23 C 1.38715 * 120.02724 * 204.99975 * 17 14 13 24 24 O 1.35904 * 120.05274 * 359.95947 * 23 17 14 25 25 H 1.09007 * 109.46934 * 185.84653 * 1 2 3 26 26 H 1.08998 * 109.47651 * 305.84205 * 1 2 3 27 27 H 1.09002 * 109.46941 * 65.85081 * 1 2 3 28 28 H 1.08990 * 109.47573 * 240.00311 * 2 1 3 29 29 H 1.09002 * 109.47080 * 119.99699 * 2 1 3 30 30 H 0.97011 * 119.99506 * 1.24259 * 8 7 5 31 31 H 1.00902 * 110.99709 * 28.21043 * 13 3 2 32 32 H 1.08995 * 109.47301 * 185.02823 * 16 14 13 33 33 H 1.09003 * 109.46936 * 305.02570 * 16 14 13 34 34 H 1.08994 * 109.47202 * 65.01888 * 16 14 13 35 35 H 1.07998 * 119.97019 * 0.02562 * 18 17 14 36 36 H 1.07990 * 119.94932 * 180.25122 * 19 18 17 37 37 H 1.09002 * 109.47265 * 269.97806 * 21 20 19 38 38 H 1.09002 * 109.47739 * 29.97889 * 21 20 19 39 39 H 1.08999 * 109.46987 * 149.97629 * 21 20 19 40 40 H 1.08001 * 120.02089 * 180.02562 * 22 20 19 41 41 H 0.96696 * 113.99821 * 90.00167 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5884 1.9875 0.8291 5 6 3.5390 1.4455 0.1542 6 1 4.1638 1.8041 -0.6504 7 6 4.1128 0.9903 1.3222 8 7 3.3664 0.7866 2.3858 9 14 5.9505 0.6626 1.3943 10 1 6.5597 0.9672 0.0747 11 1 6.5664 1.5241 2.4351 12 1 6.1860 -0.7647 1.7300 13 7 1.6767 2.0903 -1.2674 14 6 1.5286 3.5415 -1.0935 15 1 2.2821 3.9023 -0.3933 16 6 0.1339 3.8499 -0.5455 17 6 1.7090 4.2277 -2.4231 18 6 1.4628 3.5394 -3.5955 19 6 1.6230 4.1698 -4.8153 20 6 2.0410 5.4872 -4.8657 21 6 2.2206 6.1695 -6.1973 22 6 2.2935 6.1780 -3.6966 23 6 2.1279 5.5492 -2.4710 24 8 2.3753 6.2269 -1.3193 25 1 -0.3633 -1.0224 0.1047 26 1 -0.3634 0.6017 0.8330 27 1 -0.3633 0.4204 -0.9378 28 1 1.8933 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.4094 0.9395 2.3432 31 1 0.8371 1.6849 -1.6531 32 1 -0.0083 4.9296 -0.5005 33 1 -0.6190 3.4112 -1.2004 34 1 0.0352 3.4284 0.4548 35 1 1.1404 2.5093 -3.5588 36 1 1.4261 3.6314 -5.7304 37 1 3.2429 6.0227 -6.5458 38 1 1.5254 5.7434 -6.9207 39 1 2.0234 7.2359 -6.0885 40 1 2.6195 7.2069 -3.7366 41 1 3.2884 6.1555 -1.0093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:35 Heat of formation + Delta-G solvation = -56.906623 kcal Electronic energy + Delta-G solvation = -20324.160574 eV Core-core repulsion = 17395.445290 eV Total energy + Delta-G solvation = -2928.715284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03497 -38.70215 -37.72579 -35.73097 -33.72635 -32.43411 -30.83748 -30.16847 -27.69482 -27.51736 -24.91263 -23.73423 -23.27723 -21.78863 -21.26841 -18.94203 -18.63855 -17.16333 -17.13718 -16.32894 -16.18670 -15.66787 -15.57246 -14.79492 -14.74931 -14.51266 -14.36196 -14.08881 -13.98084 -13.79081 -13.38276 -13.22670 -13.01904 -12.71361 -12.58295 -12.42160 -12.38854 -12.36717 -11.99919 -11.94382 -11.81861 -11.64861 -11.16056 -10.69537 -10.42916 -9.64926 -9.31383 -9.07843 -8.50651 -6.21904 0.35596 0.46020 1.52476 1.60186 1.77949 2.57635 2.71375 3.20886 3.37475 3.43419 3.87371 4.03194 4.10407 4.22738 4.30856 4.31895 4.37272 4.45659 4.48736 4.52474 4.72456 4.76673 4.85061 4.88387 4.93635 4.97850 5.04886 5.09433 5.11008 5.15920 5.32204 5.32636 5.49033 5.54166 5.66377 5.68724 6.01115 6.06989 6.19910 6.54338 6.62552 6.80984 6.96073 7.54054 8.81806 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.005768 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.064701 B = 4853.391303 C = 5384.003935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C 0.214 3.786 4 H -0.032 1.032 5 C -0.586 4.586 6 H 0.037 0.963 7 C -0.028 4.028 8 N -0.936 5.936 9 Si 1.112 2.888 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.279 1.279 13 N -0.669 5.669 14 C 0.139 3.861 15 H 0.054 0.946 16 C -0.158 4.158 17 C -0.109 4.109 18 C -0.090 4.090 19 C -0.134 4.134 20 C -0.082 4.082 21 C -0.108 4.108 22 C -0.155 4.155 23 C 0.092 3.908 24 O -0.510 6.510 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.258 0.742 31 H 0.329 0.671 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.140 0.860 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 8.261 -14.660 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.105 3.895 4 H -0.014 1.014 5 C -0.625 4.625 6 H 0.056 0.944 7 C -0.226 4.226 8 N -0.573 5.573 9 Si 0.936 3.064 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.205 1.205 13 N -0.300 5.300 14 C 0.028 3.972 15 H 0.072 0.928 16 C -0.217 4.217 17 C -0.110 4.110 18 C -0.108 4.108 19 C -0.152 4.152 20 C -0.082 4.082 21 C -0.165 4.165 22 C -0.173 4.173 23 C 0.047 3.953 24 O -0.322 6.322 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.158 0.842 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.227 7.955 -13.918 16.353 hybrid contribution -1.502 0.293 0.297 1.558 sum -4.729 8.248 -13.622 16.612 Atomic orbital electron populations 1.21778 0.95381 1.01694 1.01056 1.21660 0.95119 0.98738 1.00358 1.19074 0.94525 0.90219 0.85631 1.01424 1.22230 0.92700 1.45090 1.02465 0.94449 1.26981 1.10023 0.93890 0.91719 1.70874 1.07400 1.49125 1.29936 0.82983 0.70540 0.77121 0.75780 1.20357 1.20939 1.20520 1.60648 1.38896 1.01906 1.28598 1.20005 0.95781 0.88472 0.92924 0.92801 1.22296 0.97099 1.02008 1.00326 1.20267 1.01833 0.93213 0.95733 1.20991 0.98611 0.99822 0.91414 1.21328 1.01106 0.94846 0.97946 1.20121 0.97827 0.94201 0.96020 1.20817 1.03160 1.00511 0.91973 1.21396 1.03702 1.01234 0.90964 1.18494 1.00649 0.89879 0.86232 1.84727 1.35503 1.72468 1.39486 0.91781 0.94342 0.91800 0.92940 0.94414 0.93245 0.85238 0.92028 0.91568 0.94097 0.85459 0.83637 0.90268 0.90098 0.90658 0.84191 0.74222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.66 71.98 0.70 -4.32 16 2 C -0.12 -5.43 5.23 30.59 0.16 -5.27 16 3 C 0.21 10.61 1.44 44.17 0.06 10.67 16 4 H -0.03 -1.74 6.19 -2.38 -0.01 -1.76 16 5 C -0.59 -33.18 8.54 25.60 0.22 -32.96 16 6 H 0.04 2.20 7.85 -2.91 -0.02 2.18 16 7 C -0.03 -1.58 5.09 84.65 0.43 -1.15 16 8 N -0.94 -56.58 13.00 21.45 0.28 -56.30 16 9 Si 1.11 51.39 29.92 68.60 2.05 53.45 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.67 -27.98 5.11 -477.15 -2.44 -30.41 16 14 C 0.14 5.45 2.34 44.17 0.10 5.55 16 15 H 0.05 2.50 7.31 -2.39 -0.02 2.48 16 16 C -0.16 -5.56 9.13 71.98 0.66 -4.90 16 17 C -0.11 -3.77 5.07 -19.77 -0.10 -3.87 16 18 C -0.09 -2.75 9.31 22.25 0.21 -2.54 16 19 C -0.13 -3.33 9.70 22.29 0.22 -3.12 16 20 C -0.08 -1.89 5.88 -19.88 -0.12 -2.00 16 21 C -0.11 -1.63 10.01 71.23 0.71 -0.92 16 22 C -0.15 -4.05 9.64 22.36 0.22 -3.83 16 23 C 0.09 2.93 6.68 22.50 0.15 3.08 16 24 O -0.51 -15.83 12.64 -92.47 -1.17 -17.00 16 25 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.97 6.69 -2.39 -0.02 1.95 16 28 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.93 6.62 -2.39 -0.02 1.91 16 30 H 0.26 15.75 6.36 -92.70 -0.59 15.16 16 31 H 0.33 12.12 5.64 -89.69 -0.51 11.61 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 2.05 8.05 -2.39 -0.02 2.03 16 34 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 35 H 0.13 3.82 6.81 -2.91 -0.02 3.80 16 36 H 0.15 2.75 8.06 -2.92 -0.02 2.73 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 39 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 40 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.40 9.95 9.06 -74.06 -0.67 9.28 16 Total: -1.00 -66.89 330.65 2.37 -64.52 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.03 Total: 31.36 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 3.61 Total: -45.61 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.16 Total: -86.72 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -1.17 Total: -17.00 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.45 kcal Total: -66.89 2.37 -64.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.617 kcal (2) G-P(sol) polarization free energy of solvation -66.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds