Wall clock time and date at job start Mon Mar 30 2020 06:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47162 * 2 1 4 4 H 1.08999 * 109.47369 * 183.60846 * 3 2 1 5 5 C 1.50703 * 109.47317 * 303.60897 * 3 2 1 6 6 H 1.07999 * 120.00152 * 114.48364 * 5 3 2 7 7 C 1.37879 * 119.99583 * 294.48674 * 5 3 2 8 8 N 1.31518 * 120.00008 * 348.50019 * 7 5 3 9 9 Si 1.86799 * 119.99832 * 168.49779 * 7 5 3 10 10 H 1.48506 * 109.46922 * 90.00123 * 9 7 5 11 11 H 1.48498 * 109.47276 * 209.99763 * 9 7 5 12 12 H 1.48504 * 109.47313 * 330.00103 * 9 7 5 13 13 N 1.46898 * 109.47314 * 63.60755 * 3 2 1 14 14 C 1.46899 * 111.00406 * 84.29537 * 13 3 2 15 15 H 1.09005 * 109.46656 * 323.45302 * 14 13 3 16 16 C 1.53000 * 109.47069 * 83.45167 * 14 13 3 17 17 C 1.50705 * 109.47495 * 203.45537 * 14 13 3 18 18 C 1.38265 * 119.94002 * 319.72433 * 17 14 13 19 19 C 1.38148 * 120.05157 * 179.72940 * 18 17 14 20 20 C 1.38729 * 119.94103 * 0.54252 * 19 18 17 21 21 O 1.35904 * 120.05123 * 179.75199 * 20 19 18 22 22 C 1.42904 * 116.99987 * 359.97438 * 21 20 19 23 23 C 1.38731 * 119.89133 * 359.73027 * 20 19 18 24 24 C 1.38138 * 119.94392 * 359.97438 * 23 20 19 25 25 H 1.09008 * 109.47378 * 181.54814 * 1 2 3 26 26 H 1.09003 * 109.47757 * 301.55003 * 1 2 3 27 27 H 1.09001 * 109.47527 * 61.54924 * 1 2 3 28 28 H 1.09001 * 109.47522 * 239.99760 * 2 1 3 29 29 H 1.09004 * 109.47287 * 119.99761 * 2 1 3 30 30 H 0.96992 * 120.00211 * 357.19248 * 8 7 5 31 31 H 1.00903 * 110.99833 * 320.34229 * 13 3 2 32 32 H 1.09000 * 109.46835 * 180.02562 * 16 14 13 33 33 H 1.09000 * 109.47196 * 300.00101 * 16 14 13 34 34 H 1.08991 * 109.47349 * 60.00560 * 16 14 13 35 35 H 1.07996 * 119.97063 * 0.02562 * 18 17 14 36 36 H 1.07994 * 120.02425 * 180.27450 * 19 18 17 37 37 H 1.09000 * 109.46534 * 60.00756 * 22 21 20 38 38 H 1.09002 * 109.46569 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.47643 * 300.00198 * 22 21 20 40 40 H 1.07999 * 120.02558 * 179.97438 * 23 20 19 41 41 H 1.08007 * 119.96908 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1280 1.4432 -0.0647 5 6 1.4659 2.1783 -1.1833 6 1 0.7811 2.9989 -1.0286 7 6 1.8150 1.8037 -2.4635 8 7 2.8103 0.9655 -2.6551 9 14 0.8743 2.4865 -3.9257 10 1 1.5176 3.7438 -4.3848 11 1 0.8857 1.4930 -5.0294 12 1 -0.5283 2.7656 -3.5255 13 7 1.6227 2.1094 1.2406 14 6 2.5638 1.8265 2.3326 15 1 2.9229 0.8010 2.2461 16 6 3.7487 2.7907 2.2473 17 6 1.8656 2.0044 3.6562 18 6 0.9860 3.0558 3.8367 19 6 0.3405 3.2178 5.0473 20 6 0.5840 2.3310 6.0860 21 8 -0.0460 2.4912 7.2795 22 6 -0.9459 3.5952 7.3950 23 6 1.4713 1.2801 5.9041 24 6 2.1096 1.1189 4.6897 25 1 -0.3634 -1.0273 0.0278 26 1 -0.3635 0.5377 0.8757 27 1 -0.3634 0.4896 -0.9035 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.3248 0.6426 -1.8989 31 1 0.6831 1.8442 1.4953 32 1 4.4471 2.5805 3.0573 33 1 4.2537 2.6620 1.2899 34 1 3.3896 3.8162 2.3337 35 1 0.7999 3.7482 3.0291 36 1 -0.3497 4.0367 5.1863 37 1 -1.7405 3.4950 6.6556 38 1 -1.3799 3.6070 8.3948 39 1 -0.4043 4.5252 7.2226 40 1 1.6628 0.5887 6.7113 41 1 2.8001 0.3007 4.5475 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:41 Heat of formation + Delta-G solvation = -24.219553 kcal Electronic energy + Delta-G solvation = -20039.134024 eV Core-core repulsion = 17111.836157 eV Total energy + Delta-G solvation = -2927.297867 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14339 -38.19313 -36.46388 -33.59927 -31.37307 -30.98148 -29.51817 -28.23639 -27.19520 -25.52815 -23.55300 -23.05397 -22.18178 -20.36436 -19.14600 -18.15383 -16.88631 -16.15297 -15.80979 -15.65993 -14.70046 -14.31187 -13.78215 -13.62553 -13.57961 -13.51138 -13.24647 -12.77048 -12.66102 -12.38439 -12.00209 -11.95413 -11.75076 -11.23053 -11.02742 -10.86067 -10.76827 -10.70632 -10.57852 -10.18910 -10.07331 -9.98890 -9.76381 -8.89633 -8.68073 -8.17285 -7.98235 -7.30829 -6.28669 -3.94397 1.43963 1.53477 3.21461 3.47010 3.50059 3.65767 3.86616 4.56212 4.81123 4.90200 4.98484 4.99068 5.09205 5.19446 5.28487 5.41443 5.52905 5.55228 5.68506 5.85662 5.95280 6.12217 6.14289 6.15240 6.23957 6.33029 6.33854 6.42727 6.53313 6.71130 6.73820 6.81577 6.85777 7.03544 7.11383 7.28240 7.30312 7.39207 7.98190 8.31587 8.49731 8.69754 8.96452 9.72365 11.08173 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030306 B = 0.004394 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.676511 B = 6370.982467 C = 6566.365627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.149 4.149 3 C 0.204 3.796 4 H 0.027 0.973 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 1.064 2.936 10 H -0.290 1.290 11 H -0.286 1.286 12 H -0.289 1.289 13 N -0.670 5.670 14 C 0.122 3.878 15 H 0.040 0.960 16 C -0.129 4.129 17 C -0.110 4.110 18 C -0.059 4.059 19 C -0.209 4.209 20 C 0.114 3.886 21 O -0.322 6.322 22 C 0.029 3.971 23 C -0.154 4.154 24 C -0.079 4.079 25 H 0.026 0.974 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.019 0.981 30 H 0.268 0.732 31 H 0.329 0.671 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.126 0.874 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 2.633 16.735 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.189 4.189 3 C 0.096 3.904 4 H 0.045 0.955 5 C -0.609 4.609 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.551 5.551 9 Si 0.893 3.107 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.215 1.215 13 N -0.301 5.301 14 C 0.012 3.988 15 H 0.058 0.942 16 C -0.187 4.187 17 C -0.111 4.111 18 C -0.077 4.077 19 C -0.228 4.228 20 C 0.070 3.930 21 O -0.236 6.236 22 C -0.067 4.067 23 C -0.173 4.173 24 C -0.098 4.098 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.144 0.856 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.170 3.066 15.078 15.942 hybrid contribution -0.232 -0.700 1.791 1.937 sum -4.401 2.367 16.869 17.594 Atomic orbital electron populations 1.21557 0.96850 0.98462 1.01768 1.22188 0.96053 1.01402 0.99240 1.19344 0.95426 0.88242 0.87416 0.95491 1.21801 1.29898 1.18316 0.90921 0.92716 1.25668 0.96638 0.95929 1.00182 1.70772 1.17533 1.31860 1.34946 0.83628 0.75522 0.75935 0.75621 1.21698 1.21194 1.21509 1.60941 1.03981 1.62583 1.02643 1.20379 0.93599 0.97282 0.87539 0.94218 1.21739 0.96413 0.99629 1.00952 1.20094 0.98879 0.95933 0.96189 1.20959 0.93820 0.96834 0.96116 1.21248 1.05283 1.01737 0.94498 1.19012 0.93879 0.95429 0.84728 1.86032 1.56879 1.48907 1.31807 1.23008 0.92274 0.88329 1.03054 1.20313 0.99646 0.98731 0.98608 1.20881 0.98450 0.98564 0.91886 0.95479 0.94634 0.91247 0.91693 0.96192 0.92115 0.85119 0.93711 0.92166 0.92357 0.84598 0.85754 0.92691 0.88552 0.92742 0.85635 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.40 37.15 0.35 -2.34 16 2 C -0.15 -3.38 5.49 -26.74 -0.15 -3.53 16 3 C 0.20 4.90 1.77 -68.87 -0.12 4.78 16 4 H 0.03 0.72 6.20 -51.93 -0.32 0.39 16 5 C -0.57 -15.38 7.35 -34.44 -0.25 -15.63 16 6 H 0.05 1.52 7.84 -52.49 -0.41 1.11 16 7 C 0.02 0.54 5.20 -17.82 -0.09 0.45 16 8 N -0.91 -26.78 12.97 55.43 0.72 -26.06 16 9 Si 1.06 24.97 29.92 -169.99 -5.09 19.88 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.67 -13.78 5.41 -102.17 -0.55 -14.33 16 14 C 0.12 2.17 2.63 -68.86 -0.18 1.99 16 15 H 0.04 0.74 6.91 -51.93 -0.36 0.38 16 16 C -0.13 -2.21 9.36 37.16 0.35 -1.86 16 17 C -0.11 -1.72 4.71 -104.60 -0.49 -2.21 16 18 C -0.06 -0.88 9.04 -39.60 -0.36 -1.24 16 19 C -0.21 -2.77 9.04 -39.43 -0.36 -3.12 16 20 C 0.11 1.54 6.69 -39.22 -0.26 1.28 16 21 O -0.32 -3.96 10.50 -19.44 -0.20 -4.16 16 22 C 0.03 0.24 9.81 101.05 0.99 1.23 16 23 C -0.15 -2.06 9.99 -39.44 -0.39 -2.46 16 24 C -0.08 -1.11 9.66 -39.61 -0.38 -1.49 16 25 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.03 0.68 6.32 -51.93 -0.33 0.35 16 27 H 0.07 1.57 7.17 -51.93 -0.37 1.20 16 28 H 0.06 1.63 6.71 -51.93 -0.35 1.28 16 29 H 0.02 0.41 7.31 -51.93 -0.38 0.03 16 30 H 0.27 7.83 6.33 -40.82 -0.26 7.57 16 31 H 0.33 6.64 5.79 -39.29 -0.23 6.41 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.14 7.30 -51.93 -0.38 0.76 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.14 2.09 7.72 -52.49 -0.41 1.69 16 36 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 37 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 40 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.13 1.56 8.03 -52.48 -0.42 1.14 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -29.35 326.14 -7.81 -37.16 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.25 Total: 6.76 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -1.35 Total: -24.16 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.17 Total: -40.40 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.20 Total: -4.16 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.09 Total: 19.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.35 -7.81 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.944 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds