Wall clock time and date at job start Mon Mar 30 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 H 1.08995 * 109.46938 * 305.05508 * 3 2 1 5 5 C 1.50699 * 109.46874 * 185.05442 * 3 2 1 6 6 H 1.08003 * 120.00162 * 239.99569 * 5 3 2 7 7 C 1.37878 * 119.99918 * 60.00420 * 5 3 2 8 8 N 1.31511 * 120.00299 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99884 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47172 * 89.99565 * 9 7 5 11 11 H 1.48501 * 109.47326 * 209.99795 * 9 7 5 12 12 H 1.48503 * 109.47372 * 330.00168 * 9 7 5 13 13 N 1.46905 * 109.47106 * 65.05824 * 3 2 1 14 14 C 1.46897 * 111.00003 * 205.38751 * 13 3 2 15 15 H 1.09007 * 109.46803 * 326.16566 * 14 13 3 16 16 C 1.52998 * 109.47276 * 86.16088 * 14 13 3 17 17 C 1.50697 * 109.47290 * 206.16771 * 14 13 3 18 18 C 1.38266 * 119.94936 * 139.99783 * 17 14 13 19 19 C 1.38145 * 120.05703 * 180.02562 * 18 17 14 20 20 C 1.38729 * 119.94098 * 359.97438 * 19 18 17 21 21 O 1.35904 * 120.05263 * 179.97438 * 20 19 18 22 22 C 1.42899 * 117.00331 * 179.97438 * 21 20 19 23 23 C 1.38732 * 119.89460 * 0.02562 * 20 19 18 24 24 C 1.38142 * 119.93981 * 359.97438 * 23 20 19 25 25 H 1.09004 * 109.47056 * 303.86418 * 1 2 3 26 26 H 1.08996 * 109.47101 * 63.85588 * 1 2 3 27 27 H 1.08991 * 109.47652 * 183.86106 * 1 2 3 28 28 H 1.08995 * 109.46972 * 239.99900 * 2 1 3 29 29 H 1.09004 * 109.47034 * 120.00105 * 2 1 3 30 30 H 0.96994 * 120.00097 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00020 * 81.42702 * 13 3 2 32 32 H 1.09003 * 109.46815 * 63.73059 * 16 14 13 33 33 H 1.09003 * 109.47233 * 183.72099 * 16 14 13 34 34 H 1.08999 * 109.47594 * 303.72799 * 16 14 13 35 35 H 1.08003 * 119.96554 * 0.27781 * 18 17 14 36 36 H 1.07998 * 120.02467 * 180.02562 * 19 18 17 37 37 H 1.08993 * 109.47206 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46954 * 300.00173 * 22 21 20 39 39 H 1.08998 * 109.46738 * 60.00002 * 22 21 20 40 40 H 1.08000 * 120.02753 * 179.97438 * 23 20 19 41 41 H 1.08006 * 119.96934 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9818 -0.8412 5 6 3.5418 1.4442 -0.1252 6 1 4.1479 1.8886 0.6505 7 6 4.1421 0.8787 -1.2301 8 7 3.4042 0.3373 -2.1745 9 14 6.0036 0.8815 -1.3856 10 1 6.5541 -0.3502 -0.7648 11 1 6.3804 0.9231 -2.8214 12 1 6.5564 2.0737 -0.6940 13 7 1.6526 2.0989 1.2559 14 6 1.5648 3.5550 1.0835 15 1 2.3161 3.8818 0.3645 16 6 0.1721 3.9246 0.5690 17 6 1.8077 4.2332 2.4071 18 6 2.5628 5.3901 2.4617 19 6 2.7874 6.0133 3.6740 20 6 2.2540 5.4776 4.8372 21 8 2.4740 6.0885 6.0311 22 6 1.8938 5.4813 7.1872 23 6 1.4967 4.3166 4.7799 24 6 1.2751 3.6973 3.5652 25 1 -0.3633 0.5727 0.8534 26 1 -0.3633 0.4528 -0.9225 27 1 -0.3634 -1.0252 0.0692 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8266 -0.0609 -2.9516 31 1 2.2908 1.8606 2.0002 32 1 -0.5743 3.6577 1.3173 33 1 0.1279 4.9969 0.3783 34 1 -0.0297 3.3826 -0.3549 35 1 2.9740 5.8092 1.5551 36 1 3.3769 6.9172 3.7159 37 1 2.1459 6.0676 8.0708 38 1 0.8105 5.4434 7.0728 39 1 2.2828 4.4694 7.3000 40 1 1.0809 3.8974 5.6842 41 1 0.6859 2.7932 3.5201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:44 Heat of formation + Delta-G solvation = -25.426246 kcal Electronic energy + Delta-G solvation = -19985.218551 eV Core-core repulsion = 17057.868359 eV Total energy + Delta-G solvation = -2927.350193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02505 -37.98462 -36.02481 -33.31359 -31.47882 -30.86457 -29.55178 -28.40569 -27.09974 -25.89730 -23.17584 -22.67847 -21.93431 -19.85570 -19.33142 -18.04278 -16.66618 -16.11612 -15.72758 -15.34250 -14.78323 -14.40642 -14.05211 -13.56082 -13.39944 -13.21991 -12.82385 -12.72747 -12.47695 -12.06104 -11.94612 -11.72860 -11.42550 -11.25072 -11.10017 -10.84133 -10.81580 -10.63587 -10.56441 -10.30907 -10.07008 -9.57330 -9.47321 -9.02331 -8.77390 -8.35781 -7.86280 -7.25834 -5.98425 -4.11103 1.56672 1.66038 3.27658 3.30592 3.34954 3.38077 3.99535 4.40728 4.89387 5.01754 5.05001 5.10565 5.20579 5.27148 5.34372 5.37815 5.66922 5.67819 5.84685 6.05880 6.10987 6.24937 6.34362 6.42996 6.49533 6.53399 6.55030 6.67445 6.72341 6.80918 6.95586 7.03075 7.15436 7.19565 7.47664 7.49844 7.61924 7.79710 8.11218 8.17954 8.35742 8.68515 9.02122 9.56664 11.01570 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.005138 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.659567 B = 5448.623761 C = 6159.072078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.127 3.873 15 H 0.055 0.945 16 C -0.129 4.129 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.154 4.154 20 C 0.111 3.889 21 O -0.323 6.323 22 C 0.029 3.971 23 C -0.210 4.210 24 C -0.062 4.062 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.023 0.977 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.329 0.671 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.123 0.877 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 8.287 12.459 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.052 0.948 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.312 5.312 14 C 0.017 3.983 15 H 0.073 0.927 16 C -0.187 4.187 17 C -0.106 4.106 18 C -0.096 4.096 19 C -0.173 4.173 20 C 0.067 3.933 21 O -0.237 6.237 22 C -0.066 4.066 23 C -0.229 4.229 24 C -0.081 4.081 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.140 0.860 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.384 8.260 12.206 15.691 hybrid contribution 1.961 -0.054 -0.072 1.963 sum -3.423 8.206 12.134 15.043 Atomic orbital electron populations 1.21712 0.99048 0.98381 1.00370 1.21488 0.92062 0.99282 1.01592 1.19175 0.92701 0.91189 0.86234 0.94814 1.21881 0.92815 1.38129 1.05479 0.92908 1.24915 0.97791 0.95030 0.95703 1.69873 1.34744 1.38284 1.09442 0.86686 0.86259 0.78408 0.77178 1.20687 1.21223 1.20078 1.61043 1.55210 1.04828 1.10109 1.20278 0.96836 0.89757 0.91424 0.92678 1.21747 0.96438 0.99268 1.01202 1.20175 0.98402 0.95945 0.96095 1.20929 0.96930 0.94847 0.96857 1.20326 1.04496 1.02256 0.90198 1.18997 0.96442 0.92553 0.85327 1.86027 1.72215 1.51642 1.13833 1.22986 0.98149 0.98977 0.86485 1.21212 1.04801 0.97607 0.99283 1.20910 0.97408 0.98951 0.90790 0.93127 0.94582 0.95773 0.89224 0.95224 0.92926 0.85415 0.92944 0.93786 0.92268 0.85520 0.85742 0.88661 0.92834 0.92754 0.85951 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.85 37.16 0.37 -2.43 16 2 C -0.11 -2.49 5.45 -26.73 -0.15 -2.64 16 3 C 0.21 5.17 1.78 -68.86 -0.12 5.05 16 4 H 0.03 0.90 7.19 -51.93 -0.37 0.53 16 5 C -0.54 -14.48 8.29 -34.44 -0.29 -14.77 16 6 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.79 11.29 55.43 0.63 -24.17 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.79 4.84 -102.17 -0.49 -14.28 16 14 C 0.13 2.33 2.62 -68.87 -0.18 2.15 16 15 H 0.06 1.14 7.50 -51.93 -0.39 0.75 16 16 C -0.13 -2.14 9.40 37.16 0.35 -1.79 16 17 C -0.11 -1.72 4.72 -104.60 -0.49 -2.21 16 18 C -0.08 -1.17 9.66 -39.61 -0.38 -1.56 16 19 C -0.15 -2.22 9.99 -39.43 -0.39 -2.61 16 20 C 0.11 1.58 6.69 -39.22 -0.26 1.32 16 21 O -0.32 -4.19 10.50 -19.44 -0.20 -4.39 16 22 C 0.03 0.26 9.81 101.05 0.99 1.25 16 23 C -0.21 -2.87 9.04 -39.43 -0.36 -3.23 16 24 C -0.06 -0.94 8.97 -39.61 -0.36 -1.29 16 25 H 0.05 0.98 7.65 -51.93 -0.40 0.58 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.33 6.79 7.62 -39.29 -0.30 6.49 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.06 7.48 -51.93 -0.39 0.67 16 35 H 0.13 1.79 8.04 -52.48 -0.42 1.36 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 39 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 40 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 41 H 0.13 1.98 7.71 -52.48 -0.40 1.58 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -28.11 332.75 -8.05 -36.16 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.61 Total: 6.56 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.36 Total: -21.01 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.13 Total: -38.45 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.20 Total: -4.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.11 -8.05 -36.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.733 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds