Wall clock time and date at job start Mon Mar 30 2020 06:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 H 1.08995 * 109.46938 * 305.05508 * 3 2 1 5 5 C 1.50699 * 109.46874 * 185.05442 * 3 2 1 6 6 H 1.08003 * 120.00162 * 239.99569 * 5 3 2 7 7 C 1.37878 * 119.99918 * 60.00420 * 5 3 2 8 8 N 1.31511 * 120.00299 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99884 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47172 * 89.99565 * 9 7 5 11 11 H 1.48501 * 109.47326 * 209.99795 * 9 7 5 12 12 H 1.48503 * 109.47372 * 330.00168 * 9 7 5 13 13 N 1.46905 * 109.47106 * 65.05824 * 3 2 1 14 14 C 1.46897 * 111.00003 * 205.38751 * 13 3 2 15 15 H 1.09007 * 109.46803 * 326.16566 * 14 13 3 16 16 C 1.52998 * 109.47276 * 86.16088 * 14 13 3 17 17 C 1.50697 * 109.47290 * 206.16771 * 14 13 3 18 18 C 1.38266 * 119.94936 * 139.99783 * 17 14 13 19 19 C 1.38145 * 120.05703 * 180.02562 * 18 17 14 20 20 C 1.38729 * 119.94098 * 359.97438 * 19 18 17 21 21 O 1.35904 * 120.05263 * 179.97438 * 20 19 18 22 22 C 1.42899 * 117.00331 * 179.97438 * 21 20 19 23 23 C 1.38732 * 119.89460 * 0.02562 * 20 19 18 24 24 C 1.38142 * 119.93981 * 359.97438 * 23 20 19 25 25 H 1.09004 * 109.47056 * 303.86418 * 1 2 3 26 26 H 1.08996 * 109.47101 * 63.85588 * 1 2 3 27 27 H 1.08991 * 109.47652 * 183.86106 * 1 2 3 28 28 H 1.08995 * 109.46972 * 239.99900 * 2 1 3 29 29 H 1.09004 * 109.47034 * 120.00105 * 2 1 3 30 30 H 0.96994 * 120.00097 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00020 * 81.42702 * 13 3 2 32 32 H 1.09003 * 109.46815 * 63.73059 * 16 14 13 33 33 H 1.09003 * 109.47233 * 183.72099 * 16 14 13 34 34 H 1.08999 * 109.47594 * 303.72799 * 16 14 13 35 35 H 1.08003 * 119.96554 * 0.27781 * 18 17 14 36 36 H 1.07998 * 120.02467 * 180.02562 * 19 18 17 37 37 H 1.08993 * 109.47206 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.46954 * 300.00173 * 22 21 20 39 39 H 1.08998 * 109.46738 * 60.00002 * 22 21 20 40 40 H 1.08000 * 120.02753 * 179.97438 * 23 20 19 41 41 H 1.08006 * 119.96934 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9818 -0.8412 5 6 3.5418 1.4442 -0.1252 6 1 4.1479 1.8886 0.6505 7 6 4.1421 0.8787 -1.2301 8 7 3.4042 0.3373 -2.1745 9 14 6.0036 0.8815 -1.3856 10 1 6.5541 -0.3502 -0.7648 11 1 6.3804 0.9231 -2.8214 12 1 6.5564 2.0737 -0.6940 13 7 1.6526 2.0989 1.2559 14 6 1.5648 3.5550 1.0835 15 1 2.3161 3.8818 0.3645 16 6 0.1721 3.9246 0.5690 17 6 1.8077 4.2332 2.4071 18 6 2.5628 5.3901 2.4617 19 6 2.7874 6.0133 3.6740 20 6 2.2540 5.4776 4.8372 21 8 2.4740 6.0885 6.0311 22 6 1.8938 5.4813 7.1872 23 6 1.4967 4.3166 4.7799 24 6 1.2751 3.6973 3.5652 25 1 -0.3633 0.5727 0.8534 26 1 -0.3633 0.4528 -0.9225 27 1 -0.3634 -1.0252 0.0692 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8266 -0.0609 -2.9516 31 1 2.2908 1.8606 2.0002 32 1 -0.5743 3.6577 1.3173 33 1 0.1279 4.9969 0.3783 34 1 -0.0297 3.3826 -0.3549 35 1 2.9740 5.8092 1.5551 36 1 3.3769 6.9172 3.7159 37 1 2.1459 6.0676 8.0708 38 1 0.8105 5.4434 7.0728 39 1 2.2828 4.4694 7.3000 40 1 1.0809 3.8974 5.6842 41 1 0.6859 2.7932 3.5201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:43 Heat of formation + Delta-G solvation = -40.848822 kcal Electronic energy + Delta-G solvation = -19985.887325 eV Core-core repulsion = 17057.868359 eV Total energy + Delta-G solvation = -2928.018966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09576 -39.22564 -37.58515 -34.99972 -33.37623 -31.97309 -31.01516 -29.69482 -28.03701 -27.74760 -24.84621 -24.01038 -23.17656 -21.33982 -21.05050 -19.06232 -18.65250 -17.24679 -16.78201 -16.66117 -16.58123 -15.70725 -15.42884 -15.17288 -14.70111 -14.44585 -14.34896 -14.09608 -13.88038 -13.37848 -13.24463 -13.12814 -13.07108 -12.85191 -12.74201 -12.47875 -12.45094 -12.03799 -11.88346 -11.67406 -11.66754 -11.46749 -11.28935 -10.93028 -10.43267 -9.89569 -9.04146 -8.98982 -8.03914 -6.25527 0.44163 0.50584 1.37180 1.39268 1.47754 2.40526 2.42218 2.84525 3.15777 3.66052 3.93657 3.97102 4.02700 4.36704 4.43109 4.50930 4.56519 4.59512 4.63219 4.72235 4.76058 4.79544 4.82415 4.92207 5.03193 5.10139 5.18894 5.22202 5.35641 5.41050 5.45110 5.48212 5.55771 5.64597 5.76905 5.85037 5.87116 6.14963 6.24807 6.43298 6.50313 6.85803 7.04742 7.45840 8.92220 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.005138 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.659567 B = 5448.623761 C = 6159.072078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.224 3.776 4 H 0.003 0.997 5 C -0.557 4.557 6 H 0.045 0.955 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.667 5.667 14 C 0.131 3.869 15 H 0.024 0.976 16 C -0.121 4.121 17 C -0.123 4.123 18 C -0.085 4.085 19 C -0.161 4.161 20 C 0.111 3.889 21 O -0.335 6.335 22 C 0.018 3.982 23 C -0.206 4.206 24 C -0.066 4.066 25 H 0.061 0.939 26 H 0.029 0.971 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.327 0.673 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.120 0.880 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.149 0.851 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.004 8.830 14.509 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.021 0.979 5 C -0.596 4.596 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.200 1.200 13 N -0.297 5.297 14 C 0.021 3.979 15 H 0.042 0.958 16 C -0.179 4.179 17 C -0.124 4.124 18 C -0.104 4.104 19 C -0.179 4.179 20 C 0.066 3.934 21 O -0.250 6.250 22 C -0.076 4.076 23 C -0.225 4.225 24 C -0.084 4.084 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.167 0.833 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.577 8.811 14.275 17.678 hybrid contribution 2.012 -0.161 -0.606 2.107 sum -3.566 8.650 13.668 16.564 Atomic orbital electron populations 1.21565 0.96335 0.99824 1.00507 1.21347 0.94463 0.98372 0.99880 1.18924 0.91247 0.91507 0.86818 0.97903 1.22166 0.94264 1.37837 1.05339 0.93672 1.25600 1.01725 0.94883 0.95545 1.69995 1.36211 1.38857 1.09791 0.85756 0.81548 0.78355 0.77144 1.20177 1.20854 1.19969 1.60990 1.54393 1.06088 1.08193 1.20216 0.96900 0.88506 0.92323 0.95828 1.21669 0.95618 1.00131 1.00441 1.19993 1.00279 0.96811 0.95318 1.21002 0.96964 0.94791 0.97614 1.20512 1.04628 1.02747 0.90054 1.19144 0.95808 0.92490 0.85937 1.86024 1.72557 1.52148 1.14230 1.23324 0.98820 0.99769 0.85672 1.21435 1.04202 0.97202 0.99649 1.20943 0.97446 0.99079 0.90923 0.92015 0.95198 0.93778 0.92255 0.95469 0.92938 0.85598 0.91776 0.92056 0.94159 0.85274 0.84322 0.86219 0.91688 0.92072 0.83301 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.85 71.98 0.71 -4.27 16 2 C -0.10 -4.87 5.45 30.59 0.17 -4.70 16 3 C 0.22 11.05 1.78 44.17 0.08 11.13 16 4 H 0.00 0.17 7.19 -2.39 -0.02 0.15 16 5 C -0.56 -30.30 8.29 25.60 0.21 -30.09 16 6 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 7 C 0.02 1.24 5.29 84.66 0.45 1.69 16 8 N -0.91 -52.02 11.29 21.45 0.24 -51.77 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.83 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.67 -27.24 4.84 -477.16 -2.31 -29.55 16 14 C 0.13 4.86 2.62 44.17 0.12 4.97 16 15 H 0.02 1.02 7.50 -2.38 -0.02 1.00 16 16 C -0.12 -4.01 9.40 71.98 0.68 -3.33 16 17 C -0.12 -3.97 4.72 -19.85 -0.09 -4.06 16 18 C -0.09 -2.56 9.66 22.25 0.22 -2.34 16 19 C -0.16 -4.40 9.99 22.36 0.22 -4.18 16 20 C 0.11 2.92 6.69 22.51 0.15 3.07 16 21 O -0.34 -7.81 10.50 -92.46 -0.97 -8.78 16 22 C 0.02 0.26 9.81 113.37 1.11 1.37 16 23 C -0.21 -5.14 9.04 22.37 0.20 -4.94 16 24 C -0.07 -1.88 8.97 22.25 0.20 -1.68 16 25 H 0.06 2.30 7.65 -2.39 -0.02 2.29 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 3.21 5.95 -2.39 -0.01 3.20 16 29 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.33 13.56 7.62 -89.70 -0.68 12.88 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.46 7.48 -2.39 -0.02 1.45 16 35 H 0.13 3.68 8.04 -2.91 -0.02 3.65 16 36 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 37 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 39 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 40 H 0.15 2.83 6.30 -2.91 -0.02 2.82 16 41 H 0.14 3.79 7.71 -2.91 -0.02 3.76 16 Total: -1.00 -60.43 332.75 3.72 -56.71 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.32 Total: 24.91 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 4.42 Total: -37.35 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.07 Total: -81.33 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.97 Total: -8.78 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -60.43 3.72 -56.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.863 kcal (2) G-P(sol) polarization free energy of solvation -60.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds