Wall clock time and date at job start Mon Mar 30 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47529 * 2 1 4 4 H 1.09000 * 109.47397 * 185.16076 * 3 2 1 5 5 C 1.50700 * 109.46819 * 305.15972 * 3 2 1 6 6 H 1.08007 * 119.99790 * 119.99879 * 5 3 2 7 7 C 1.37873 * 120.00301 * 299.99987 * 5 3 2 8 8 N 1.31513 * 120.00112 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47262 * 59.99897 * 9 7 5 11 11 H 1.48501 * 109.47070 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47308 * 299.99437 * 9 7 5 13 13 N 1.46901 * 109.46851 * 65.15511 * 3 2 1 14 14 C 1.46899 * 110.99443 * 85.90385 * 13 3 2 15 15 C 1.50703 * 109.47040 * 174.80299 * 14 13 3 16 16 C 1.38264 * 119.94409 * 89.99942 * 15 14 13 17 17 C 1.38149 * 120.05944 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.02992 * 180.02562 * 17 16 15 19 19 C 1.38734 * 119.94105 * 0.02562 * 17 16 15 20 20 O 1.35900 * 120.05451 * 180.02562 * 19 17 16 21 21 C 1.38735 * 119.88729 * 0.27759 * 19 17 16 22 22 C 1.50700 * 120.02731 * 179.72190 * 21 19 17 23 23 C 1.38143 * 119.94458 * 359.46918 * 21 19 17 24 24 H 1.08997 * 109.46798 * 54.85161 * 1 2 3 25 25 H 1.09007 * 109.46784 * 174.84996 * 1 2 3 26 26 H 1.08998 * 109.47029 * 294.84868 * 1 2 3 27 27 H 1.09004 * 109.47119 * 239.99652 * 2 1 3 28 28 H 1.09004 * 109.47254 * 120.00269 * 2 1 3 29 29 H 0.96998 * 120.00606 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00414 * 321.94987 * 13 3 2 31 31 H 1.09003 * 109.47328 * 54.81063 * 14 13 3 32 32 H 1.08997 * 109.47467 * 294.80394 * 14 13 3 33 33 H 1.07998 * 119.97200 * 0.02562 * 16 15 14 34 34 H 1.09004 * 109.46931 * 269.97917 * 18 17 16 35 35 H 1.08996 * 109.47085 * 29.97814 * 18 17 16 36 36 H 1.08994 * 109.46985 * 149.97826 * 18 17 16 37 37 H 0.96700 * 114.00044 * 90.00344 * 20 19 17 38 38 H 1.09001 * 109.47210 * 89.99602 * 22 21 19 39 39 H 1.09003 * 109.47420 * 210.00064 * 22 21 19 40 40 H 1.09004 * 109.46911 * 330.00045 * 22 21 19 41 41 H 1.08001 * 119.97107 * 180.27649 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4438 -0.0924 5 6 1.4362 2.1888 -1.1616 6 1 0.8270 3.0628 -0.9839 7 6 1.6612 1.7559 -2.4511 8 7 2.4033 0.6919 -2.6676 9 14 0.9132 2.6814 -3.8910 10 1 1.4088 4.0813 -3.8909 11 1 1.3030 2.0189 -5.1616 12 1 -0.5665 2.6801 -3.7654 13 7 1.6547 2.0981 1.2568 14 6 2.6432 1.8366 2.3115 15 6 2.2834 2.6255 3.5441 16 6 1.4559 2.0696 4.5022 17 6 1.1241 2.7910 5.6327 18 6 0.2227 2.1842 6.6768 19 6 1.6215 4.0745 5.8059 20 8 1.2970 4.7859 6.9174 21 6 2.4465 4.6324 4.8401 22 6 2.9835 6.0286 5.0220 23 6 2.7795 3.9049 3.7139 24 1 -0.3633 0.5916 -0.8403 25 1 -0.3633 -1.0236 -0.0923 26 1 -0.3633 0.4318 0.9325 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.5614 0.3871 -3.5747 30 1 0.7321 1.8104 1.5466 31 1 3.6324 2.1357 1.9647 32 1 2.6479 0.7729 2.5495 33 1 1.0687 1.0706 4.3667 34 1 -0.8152 2.4218 6.4432 35 1 0.3545 1.1023 6.6863 36 1 0.4766 2.5898 7.6561 37 1 1.9086 4.6622 7.6561 38 1 3.9362 5.9856 5.5499 39 1 3.1293 6.4919 4.0462 40 1 2.2733 6.6183 5.6017 41 1 3.4254 4.3371 2.9639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:59 Heat of formation + Delta-G solvation = -38.268608 kcal Electronic energy + Delta-G solvation = -19770.559856 eV Core-core repulsion = 16842.652776 eV Total energy + Delta-G solvation = -2927.907079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99618 -37.23568 -36.03846 -33.50581 -32.99237 -31.35068 -29.75558 -27.31502 -26.58510 -26.24718 -24.15904 -23.14831 -20.86835 -20.39683 -19.27935 -18.19081 -16.31504 -16.08107 -15.57680 -14.85136 -14.66233 -14.15935 -13.84207 -13.37612 -13.22552 -13.17417 -12.96328 -12.77786 -12.61151 -12.46979 -12.18172 -12.01085 -11.82356 -11.44080 -11.23779 -11.02748 -10.85473 -10.61328 -10.51034 -10.29353 -9.97032 -9.76869 -9.55922 -8.98918 -8.44189 -8.32743 -8.21048 -7.19755 -5.95956 -3.97428 1.39555 1.49271 3.35792 3.39868 3.43548 3.72756 4.28097 4.46655 4.83994 4.88678 5.02156 5.35540 5.38200 5.46518 5.52250 5.59638 5.59840 5.66448 5.70474 5.80092 5.88663 6.00471 6.12362 6.27259 6.33976 6.36248 6.37891 6.56033 6.58088 6.62240 6.89362 6.91604 7.00931 7.28036 7.28975 7.52834 7.68623 7.70760 7.90449 8.29137 8.55409 8.63036 9.08063 9.66123 11.10986 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.004405 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.608601 B = 6354.971972 C = 6907.185740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.095 3.905 15 C -0.062 4.062 16 C -0.110 4.110 17 C -0.110 4.110 18 C -0.104 4.104 19 C 0.086 3.914 20 O -0.494 6.494 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.091 4.091 24 H 0.069 0.931 25 H 0.023 0.977 26 H 0.027 0.973 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.259 0.741 30 H 0.328 0.672 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.380 0.620 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 3.393 17.285 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.309 5.309 14 C -0.035 4.035 15 C -0.062 4.062 16 C -0.128 4.128 17 C -0.110 4.110 18 C -0.161 4.161 19 C 0.042 3.958 20 O -0.303 6.303 21 C -0.109 4.109 22 C -0.166 4.166 23 C -0.109 4.109 24 H 0.088 0.912 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.111 0.889 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.242 4.087 16.590 17.088 hybrid contribution -0.208 -0.735 -0.391 0.858 sum 0.034 3.352 16.199 16.543 Atomic orbital electron populations 1.21602 0.97683 0.98668 1.00814 1.22112 0.95031 1.01136 1.00237 1.19242 0.95978 0.88586 0.85428 0.94930 1.21028 1.30530 1.11482 0.89635 0.92088 1.24903 0.95552 0.95171 0.98693 1.69868 1.39013 1.24014 1.20776 0.86629 0.79563 0.80000 0.81603 1.20355 1.21525 1.20390 1.60853 1.03619 1.63245 1.03150 1.20885 0.97783 0.95378 0.89407 1.20057 0.96012 0.94783 0.95385 1.20829 0.98625 0.99992 0.93381 1.20084 1.00052 0.93483 0.97388 1.20607 0.98579 1.00077 0.96851 1.18024 0.98559 0.90226 0.89006 1.84815 1.54098 1.68494 1.22910 1.20155 0.98048 0.97172 0.95550 1.20658 1.00540 0.92770 1.02649 1.20856 1.00112 0.93617 0.96341 0.91189 0.95783 0.95422 0.88875 0.97124 0.93083 0.85417 0.90810 0.95510 0.86118 0.91255 0.91843 0.91832 0.76563 0.91716 0.91366 0.91216 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.40 37.16 0.35 -2.44 16 2 C -0.15 -3.39 5.51 -26.73 -0.15 -3.53 16 3 C 0.22 5.28 2.33 -68.87 -0.16 5.12 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.49 -13.19 7.25 -34.44 -0.25 -13.44 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.56 5.28 -17.82 -0.09 1.47 16 8 N -0.90 -25.20 11.38 55.43 0.63 -24.57 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.37 6.19 -109.22 -0.68 -15.05 16 14 C 0.09 1.71 5.63 -4.97 -0.03 1.68 16 15 C -0.06 -0.99 5.44 -104.60 -0.57 -1.56 16 16 C -0.11 -1.59 9.35 -39.60 -0.37 -1.97 16 17 C -0.11 -1.46 5.89 -104.47 -0.62 -2.08 16 18 C -0.10 -1.10 9.79 36.00 0.35 -0.75 16 19 C 0.09 1.15 6.65 -39.21 -0.26 0.89 16 20 O -0.49 -5.51 11.60 -19.43 -0.23 -5.73 16 21 C -0.11 -1.49 5.89 -104.47 -0.62 -2.11 16 22 C -0.11 -1.21 9.79 36.01 0.35 -0.85 16 23 C -0.09 -1.38 9.35 -39.61 -0.37 -1.75 16 24 H 0.07 1.65 6.85 -51.93 -0.36 1.29 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.03 0.53 6.63 -51.93 -0.34 0.19 16 27 H 0.09 2.43 6.23 -51.93 -0.32 2.11 16 28 H 0.01 0.22 7.50 -51.93 -0.39 -0.17 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.33 6.77 6.69 -39.29 -0.26 6.51 16 31 H 0.07 1.35 7.87 -51.93 -0.41 0.94 16 32 H 0.03 0.47 7.48 -51.93 -0.39 0.08 16 33 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.06 0.58 7.53 -51.93 -0.39 0.19 16 37 H 0.38 2.46 9.06 45.56 0.41 2.87 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 41 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -29.26 331.52 -8.46 -37.73 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.74 Total: 7.57 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -2.43 Total: -21.31 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.05 Total: -39.62 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.23 Total: -5.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.26 -8.46 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.543 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds