Wall clock time and date at job start Mon Mar 30 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47529 * 2 1 4 4 H 1.09000 * 109.47397 * 185.16076 * 3 2 1 5 5 C 1.50700 * 109.46819 * 305.15972 * 3 2 1 6 6 H 1.08007 * 119.99790 * 119.99879 * 5 3 2 7 7 C 1.37873 * 120.00301 * 299.99987 * 5 3 2 8 8 N 1.31513 * 120.00112 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47262 * 59.99897 * 9 7 5 11 11 H 1.48501 * 109.47070 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47308 * 299.99437 * 9 7 5 13 13 N 1.46901 * 109.46851 * 65.15511 * 3 2 1 14 14 C 1.46899 * 110.99443 * 85.90385 * 13 3 2 15 15 C 1.50703 * 109.47040 * 174.80299 * 14 13 3 16 16 C 1.38264 * 119.94409 * 89.99942 * 15 14 13 17 17 C 1.38149 * 120.05944 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.02992 * 180.02562 * 17 16 15 19 19 C 1.38734 * 119.94105 * 0.02562 * 17 16 15 20 20 O 1.35900 * 120.05451 * 180.02562 * 19 17 16 21 21 C 1.38735 * 119.88729 * 0.27759 * 19 17 16 22 22 C 1.50700 * 120.02731 * 179.72190 * 21 19 17 23 23 C 1.38143 * 119.94458 * 359.46918 * 21 19 17 24 24 H 1.08997 * 109.46798 * 54.85161 * 1 2 3 25 25 H 1.09007 * 109.46784 * 174.84996 * 1 2 3 26 26 H 1.08998 * 109.47029 * 294.84868 * 1 2 3 27 27 H 1.09004 * 109.47119 * 239.99652 * 2 1 3 28 28 H 1.09004 * 109.47254 * 120.00269 * 2 1 3 29 29 H 0.96998 * 120.00606 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00414 * 321.94987 * 13 3 2 31 31 H 1.09003 * 109.47328 * 54.81063 * 14 13 3 32 32 H 1.08997 * 109.47467 * 294.80394 * 14 13 3 33 33 H 1.07998 * 119.97200 * 0.02562 * 16 15 14 34 34 H 1.09004 * 109.46931 * 269.97917 * 18 17 16 35 35 H 1.08996 * 109.47085 * 29.97814 * 18 17 16 36 36 H 1.08994 * 109.46985 * 149.97826 * 18 17 16 37 37 H 0.96700 * 114.00044 * 90.00344 * 20 19 17 38 38 H 1.09001 * 109.47210 * 89.99602 * 22 21 19 39 39 H 1.09003 * 109.47420 * 210.00064 * 22 21 19 40 40 H 1.09004 * 109.46911 * 330.00045 * 22 21 19 41 41 H 1.08001 * 119.97107 * 180.27649 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1262 1.4438 -0.0924 5 6 1.4362 2.1888 -1.1616 6 1 0.8270 3.0628 -0.9839 7 6 1.6612 1.7559 -2.4511 8 7 2.4033 0.6919 -2.6676 9 14 0.9132 2.6814 -3.8910 10 1 1.4088 4.0813 -3.8909 11 1 1.3030 2.0189 -5.1616 12 1 -0.5665 2.6801 -3.7654 13 7 1.6547 2.0981 1.2568 14 6 2.6432 1.8366 2.3115 15 6 2.2834 2.6255 3.5441 16 6 1.4559 2.0696 4.5022 17 6 1.1241 2.7910 5.6327 18 6 0.2227 2.1842 6.6768 19 6 1.6215 4.0745 5.8059 20 8 1.2970 4.7859 6.9174 21 6 2.4465 4.6324 4.8401 22 6 2.9835 6.0286 5.0220 23 6 2.7795 3.9049 3.7139 24 1 -0.3633 0.5916 -0.8403 25 1 -0.3633 -1.0236 -0.0923 26 1 -0.3633 0.4318 0.9325 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.5614 0.3871 -3.5747 30 1 0.7321 1.8104 1.5466 31 1 3.6324 2.1357 1.9647 32 1 2.6479 0.7729 2.5495 33 1 1.0687 1.0706 4.3667 34 1 -0.8152 2.4218 6.4432 35 1 0.3545 1.1023 6.6863 36 1 0.4766 2.5898 7.6561 37 1 1.9086 4.6622 7.6561 38 1 3.9362 5.9856 5.5499 39 1 3.1293 6.4919 4.0462 40 1 2.2733 6.6183 5.6017 41 1 3.4254 4.3371 2.9639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:58 Heat of formation + Delta-G solvation = -56.551319 kcal Electronic energy + Delta-G solvation = -19771.352654 eV Core-core repulsion = 16842.652776 eV Total energy + Delta-G solvation = -2928.699877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03727 -38.64007 -37.42951 -34.67789 -34.47333 -33.05648 -31.20526 -28.65362 -27.78207 -27.57566 -25.75280 -24.93941 -21.87788 -21.62587 -21.13087 -19.15379 -18.18621 -17.28671 -16.79432 -16.63778 -16.20296 -15.64659 -14.95916 -14.83997 -14.67674 -14.32718 -14.06479 -14.00258 -13.90822 -13.80371 -13.54325 -13.34266 -12.85655 -12.85173 -12.73215 -12.61904 -12.45432 -12.24064 -12.14083 -11.80800 -11.58803 -11.41763 -11.25124 -10.97532 -10.42203 -9.49581 -9.32364 -8.90923 -8.04594 -6.13018 0.31006 0.41665 1.44392 1.45044 1.52657 2.45802 2.65308 3.23906 3.35850 3.74519 3.84902 3.91002 4.04644 4.37226 4.38549 4.51879 4.55041 4.62056 4.65755 4.71518 4.74678 4.78714 4.80884 4.83821 4.96756 4.99364 5.10281 5.24443 5.35091 5.38047 5.42199 5.50699 5.57444 5.70369 5.73831 5.76537 5.84027 5.98755 6.32387 6.68320 6.83327 6.91297 6.98664 7.54534 9.00379 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026245 B = 0.004405 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.608601 B = 6354.971972 C = 6907.185740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.138 4.138 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.500 4.500 6 H 0.049 0.951 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.682 5.682 14 C 0.102 3.898 15 C -0.080 4.080 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.103 4.103 19 C 0.091 3.909 20 O -0.496 6.496 21 C -0.115 4.115 22 C -0.106 4.106 23 C -0.107 4.107 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.259 0.741 30 H 0.332 0.668 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.403 0.597 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 3.914 19.127 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.017 0.983 5 C -0.539 4.539 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.313 5.313 14 C -0.027 4.027 15 C -0.080 4.080 16 C -0.134 4.134 17 C -0.114 4.114 18 C -0.159 4.159 19 C 0.046 3.954 20 O -0.308 6.308 21 C -0.116 4.116 22 C -0.163 4.163 23 C -0.125 4.125 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.150 0.850 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.147 0.853 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.262 0.738 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.745 4.613 18.466 19.048 hybrid contribution 0.129 -0.853 -0.835 1.200 sum -0.616 3.760 17.631 18.038 Atomic orbital electron populations 1.21482 0.95994 0.99624 1.00770 1.21955 0.96462 0.99916 0.99483 1.18990 0.93702 0.89507 0.86525 0.98319 1.21232 1.30454 1.11337 0.90896 0.93239 1.25563 0.95921 0.95882 1.00918 1.69995 1.39875 1.25054 1.21109 0.85731 0.79016 0.78747 0.78824 1.20247 1.21120 1.19751 1.60716 1.04503 1.63029 1.03052 1.20794 0.96371 0.96090 0.89469 1.19873 0.97851 0.95197 0.95112 1.20942 0.98402 1.00559 0.93523 1.20396 0.99990 0.93541 0.97475 1.20661 0.97792 1.00803 0.96668 1.18119 0.97571 0.90176 0.89553 1.84755 1.54959 1.68067 1.23044 1.20419 0.98003 0.98192 0.94992 1.20681 1.01504 0.91162 1.02909 1.20897 1.00713 0.93768 0.97146 0.93684 0.93813 0.93399 0.91890 0.95491 0.93175 0.84960 0.92011 0.95034 0.85313 0.91223 0.90679 0.90149 0.73831 0.89757 0.91620 0.90689 0.86206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.40 71.98 0.68 -4.41 16 2 C -0.14 -6.48 5.51 30.59 0.17 -6.31 16 3 C 0.22 11.11 2.33 44.17 0.10 11.21 16 4 H 0.00 -0.06 7.70 -2.39 -0.02 -0.08 16 5 C -0.50 -27.56 7.25 25.60 0.19 -27.37 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.02 0.85 5.28 84.65 0.45 1.30 16 8 N -0.92 -52.67 11.38 21.45 0.24 -52.43 16 9 Si 0.95 44.17 29.54 68.60 2.03 46.19 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.68 -29.27 6.19 -499.46 -3.09 -32.37 16 14 C 0.10 3.72 5.63 85.56 0.48 4.20 16 15 C -0.08 -2.54 5.44 -19.85 -0.11 -2.64 16 16 C -0.12 -3.22 9.35 22.25 0.21 -3.01 16 17 C -0.11 -2.78 5.89 -19.77 -0.12 -2.90 16 18 C -0.10 -1.86 9.79 71.23 0.70 -1.16 16 19 C 0.09 2.21 6.65 22.51 0.15 2.36 16 20 O -0.50 -9.46 11.60 -92.43 -1.07 -10.53 16 21 C -0.12 -3.00 5.89 -19.77 -0.12 -3.12 16 22 C -0.11 -2.14 9.79 71.24 0.70 -1.44 16 23 C -0.11 -3.23 9.35 22.25 0.21 -3.03 16 24 H 0.04 2.10 6.85 -2.39 -0.02 2.08 16 25 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.05 1.78 6.63 -2.39 -0.02 1.77 16 27 H 0.06 3.35 6.23 -2.38 -0.01 3.33 16 28 H 0.03 1.14 7.50 -2.38 -0.02 1.12 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.33 13.61 6.69 -89.70 -0.60 13.01 16 31 H 0.06 2.36 7.87 -2.39 -0.02 2.34 16 32 H 0.03 1.11 7.48 -2.39 -0.02 1.09 16 33 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 36 H 0.08 1.17 7.53 -2.39 -0.02 1.16 16 37 H 0.40 3.74 9.06 -74.06 -0.67 3.07 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 40 H 0.07 1.44 7.53 -2.38 -0.02 1.42 16 41 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -62.79 331.52 1.54 -61.25 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.24 Total: 24.21 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.68 Total: -36.32 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.85 Total: -84.79 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -1.07 Total: -10.53 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -62.79 1.54 -61.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.700 kcal (2) G-P(sol) polarization free energy of solvation -62.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds