Wall clock time and date at job start Mon Mar 30 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46664 * 2 1 4 4 H 1.08992 * 109.47367 * 305.00283 * 3 2 1 5 5 C 1.53000 * 109.47007 * 65.00497 * 3 2 1 6 6 C 1.52998 * 109.46756 * 185.00241 * 3 2 1 7 7 N 1.46899 * 109.47088 * 175.00238 * 6 3 2 8 8 C 1.46901 * 111.00012 * 179.97438 * 7 6 3 9 9 C 1.50701 * 109.47277 * 179.97438 * 8 7 6 10 10 C 1.38121 * 120.03549 * 260.00516 * 9 8 7 11 11 C 1.38277 * 120.06553 * 180.23045 * 10 9 8 12 12 C 1.38322 * 120.14212 * 359.48544 * 11 10 9 13 13 C 1.38077 * 120.06723 * 0.51117 * 12 11 10 14 14 C 1.38858 * 120.03520 * 79.97260 * 9 8 7 15 15 O 1.35754 * 120.06718 * 0.02562 * 14 9 8 16 16 C 1.34837 * 117.00266 * 174.41833 * 15 14 9 17 17 H 1.07998 * 119.99309 * 5.06068 * 16 15 14 18 18 C 1.38653 * 120.00284 * 185.06353 * 16 15 14 19 19 N 1.31556 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47178 * 59.99777 * 20 18 16 22 22 H 1.48500 * 109.47186 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47103 * 300.00199 * 20 18 16 24 24 H 1.09005 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46821 * 299.99197 * 1 2 3 26 26 H 1.08996 * 109.47092 * 59.99907 * 1 2 3 27 27 H 1.08995 * 109.46898 * 240.00315 * 2 1 3 28 28 H 1.08996 * 109.47092 * 120.00093 * 2 1 3 29 29 H 1.08999 * 109.46844 * 300.00085 * 5 3 2 30 30 H 1.09005 * 109.46944 * 59.99621 * 5 3 2 31 31 H 1.08997 * 109.47036 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47233 * 54.99989 * 6 3 2 33 33 H 1.09003 * 109.47322 * 294.99978 * 6 3 2 34 34 H 1.00907 * 111.00137 * 56.04633 * 7 6 3 35 35 H 1.08996 * 109.47496 * 60.00133 * 8 7 6 36 36 H 1.09007 * 109.47291 * 299.99650 * 8 7 6 37 37 H 1.07991 * 119.96731 * 359.94706 * 10 9 8 38 38 H 1.08005 * 119.92766 * 179.73746 * 11 10 9 39 39 H 1.08003 * 119.96534 * 180.27876 * 12 11 10 40 40 H 1.07997 * 120.03731 * 179.76669 * 13 12 11 41 41 H 0.96996 * 120.00032 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1258 7 7 4.0445 2.8277 -0.2461 8 6 5.5078 2.8686 -0.3685 9 6 5.9619 4.3004 -0.4903 10 6 6.2713 4.8245 -1.7301 11 6 6.6926 6.1368 -1.8420 12 6 6.7953 6.9318 -0.7148 13 6 6.4874 6.4138 0.5275 14 6 6.0690 5.0944 0.6439 15 8 5.7655 4.5822 1.8639 16 6 6.0009 5.3683 2.9338 17 1 6.3357 6.3855 2.7931 18 6 5.8133 4.8710 4.2143 19 7 5.4061 3.6318 4.3856 20 14 6.1389 5.9604 5.6964 21 1 5.2523 7.1504 5.6403 22 1 5.8662 5.1975 6.9410 23 1 7.5576 6.3992 5.6862 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.5489 2.1251 1.3970 30 1 2.0699 1.5874 2.1492 31 1 1.9989 3.1540 1.3076 32 1 3.8570 0.8802 -1.0114 33 1 4.0030 0.9837 0.7596 34 1 3.7312 3.3881 0.5323 35 1 5.8139 2.3142 -1.2556 36 1 5.9591 2.4179 0.5154 37 1 6.1885 4.2075 -2.6125 38 1 6.9380 6.5431 -2.8122 39 1 7.1203 7.9577 -0.8060 40 1 6.5714 7.0338 1.4078 41 1 5.2752 3.2837 5.2814 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054468160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:59 Heat of formation + Delta-G solvation = -42.550009 kcal Electronic energy + Delta-G solvation = -19907.915180 eV Core-core repulsion = 16979.822445 eV Total energy + Delta-G solvation = -2928.092735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.87139 -38.65236 -38.03355 -35.67171 -34.25343 -32.32509 -30.63526 -30.07200 -27.61080 -27.27528 -25.61984 -23.28136 -23.19884 -21.99672 -20.77064 -19.77221 -18.61975 -17.25847 -16.52120 -16.25139 -16.20614 -16.03787 -15.61224 -15.24389 -15.13533 -14.84179 -14.42628 -14.29502 -13.99125 -13.62677 -13.52257 -13.07335 -12.97147 -12.81113 -12.66665 -12.48958 -12.31777 -12.25683 -12.16001 -12.03426 -11.52940 -11.48961 -11.38184 -11.07184 -10.78485 -9.68356 -9.34088 -8.90505 -8.45132 -6.11568 0.59507 0.79986 1.33702 1.43667 1.48355 2.17131 2.84469 3.12567 3.47241 3.56205 3.92221 3.99044 4.06278 4.10536 4.14350 4.34347 4.45013 4.50791 4.60274 4.63201 4.66190 4.72858 4.74388 4.79860 4.87356 4.96090 5.07190 5.14816 5.16040 5.19137 5.21792 5.23882 5.35712 5.50451 5.53737 5.70242 5.76486 5.82203 6.02448 6.12868 6.30331 6.35725 7.00411 7.80849 8.76396 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.006693 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.113249 B = 4182.175420 C = 6062.114937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.080 4.080 4 H 0.080 0.920 5 C -0.145 4.145 6 C 0.062 3.938 7 N -0.680 5.680 8 C 0.123 3.877 9 C -0.167 4.167 10 C -0.060 4.060 11 C -0.193 4.193 12 C -0.076 4.076 13 C -0.251 4.251 14 C 0.118 3.882 15 O -0.219 6.219 16 C -0.412 4.412 17 H 0.096 0.904 18 C -0.017 4.017 19 N -0.914 5.914 20 Si 1.011 2.989 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.261 1.261 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.084 0.916 33 H 0.006 0.994 34 H 0.333 0.667 35 H 0.093 0.907 36 H 0.001 0.999 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 -2.040 -9.767 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.099 4.099 4 H 0.098 0.902 5 C -0.203 4.203 6 C -0.067 4.067 7 N -0.311 5.311 8 C -0.005 4.005 9 C -0.169 4.169 10 C -0.078 4.078 11 C -0.211 4.211 12 C -0.094 4.094 13 C -0.271 4.271 14 C 0.068 3.932 15 O -0.125 6.125 16 C -0.488 4.488 17 H 0.113 0.887 18 C -0.215 4.215 19 N -0.552 5.552 20 Si 0.831 3.169 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.185 1.185 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.024 0.976 34 H 0.151 0.849 35 H 0.111 0.889 36 H 0.020 0.980 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.489 -2.388 -10.210 11.406 hybrid contribution 0.596 0.303 2.181 2.281 sum -3.893 -2.085 -8.030 9.164 Atomic orbital electron populations 1.21787 0.94693 1.02142 1.02017 1.21507 0.96879 0.94722 1.02089 1.21107 0.93587 0.97252 0.97934 0.90163 1.21839 1.01732 0.99481 0.97236 1.22085 0.95739 0.89305 0.99547 1.60841 1.09849 1.11517 1.48862 1.20457 0.88001 0.92659 0.99398 1.19234 1.09643 0.96178 0.91816 1.20984 0.95797 0.95878 0.95161 1.21153 1.06584 0.94348 0.99053 1.21166 0.96711 1.00183 0.91367 1.21296 1.10620 0.95675 0.99461 1.19777 0.93848 0.92956 0.86657 1.83927 1.74346 1.42765 1.11509 1.21689 1.47484 0.96175 0.83489 0.88686 1.26399 0.96259 0.98060 1.00760 1.70163 1.45088 1.16215 1.23691 0.84751 0.79470 0.77309 0.75367 1.18381 1.19783 1.18517 0.91696 0.92972 0.92165 0.90815 0.92838 0.90817 0.94559 0.94797 0.89726 0.97602 0.84944 0.88860 0.98047 0.83603 0.83328 0.84126 0.86706 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.67 71.98 0.70 -2.14 16 2 C -0.11 -2.57 5.40 30.60 0.17 -2.41 16 3 C -0.08 -2.25 2.60 -10.79 -0.03 -2.28 16 4 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 5 C -0.15 -4.67 8.72 71.98 0.63 -4.04 16 6 C 0.06 2.05 5.14 86.30 0.44 2.49 16 7 N -0.68 -26.34 6.49 -517.93 -3.36 -29.70 16 8 C 0.12 4.96 5.48 85.56 0.47 5.43 16 9 C -0.17 -7.05 5.41 -19.74 -0.11 -7.16 16 10 C -0.06 -2.03 9.66 22.25 0.22 -1.81 16 11 C -0.19 -6.03 10.04 22.30 0.22 -5.80 16 12 C -0.08 -2.65 10.04 22.25 0.22 -2.43 16 13 C -0.25 -11.10 9.17 22.39 0.21 -10.89 16 14 C 0.12 5.85 6.62 22.58 0.15 6.00 16 15 O -0.22 -12.78 8.95 -22.86 -0.20 -12.98 16 16 C -0.41 -23.77 9.49 67.92 0.64 -23.12 16 17 H 0.10 5.12 5.20 -2.91 -0.02 5.10 16 18 C -0.02 -0.94 5.49 84.83 0.47 -0.48 16 19 N -0.91 -55.14 13.67 21.61 0.30 -54.84 16 20 Si 1.01 43.05 29.55 68.60 2.03 45.07 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 24 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.05 1.04 6.57 -2.38 -0.02 1.02 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.99 6.56 -2.39 -0.02 1.98 16 30 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.03 1.25 6.68 -2.39 -0.02 1.23 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.33 15.08 6.92 -89.69 -0.62 14.46 16 35 H 0.09 3.11 8.00 -2.39 -0.02 3.09 16 36 H 0.00 0.06 7.86 -2.38 -0.02 0.04 16 37 H 0.15 3.94 8.03 -2.92 -0.02 3.91 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 40 H 0.12 5.18 5.64 -2.91 -0.02 5.17 16 41 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.32 333.95 3.54 -62.78 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.39 Total: 38.31 kcal Atomic # 6 Polarization: -53.04 SS G_CDS: 4.39 Total: -48.64 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.07 Total: -84.54 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.20 Total: -12.98 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -66.32 3.54 -62.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054468160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.228 kcal (2) G-P(sol) polarization free energy of solvation -66.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds