Wall clock time and date at job start Mon Mar 30 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47323 * 2 1 4 4 H 1.08998 * 109.47621 * 305.68838 * 3 2 1 5 5 C 1.53004 * 109.47274 * 65.68897 * 3 2 1 6 6 O 1.42902 * 109.47048 * 54.99866 * 5 3 2 7 7 C 1.42895 * 113.99928 * 180.02562 * 6 5 3 8 8 N 1.46901 * 109.47342 * 185.68668 * 3 2 1 9 9 C 1.46900 * 111.00100 * 86.80298 * 8 3 2 10 10 H 1.09002 * 109.47192 * 323.47064 * 9 8 3 11 11 C 1.50707 * 109.46653 * 83.46604 * 9 8 3 12 12 H 1.07998 * 119.99764 * 34.10345 * 11 9 8 13 13 C 1.37878 * 119.99980 * 214.10700 * 11 9 8 14 14 N 1.31517 * 119.99891 * 5.43002 * 13 11 9 15 15 Si 1.86800 * 120.00118 * 185.43310 * 13 11 9 16 16 H 1.48497 * 109.47037 * 89.99219 * 15 13 11 17 17 H 1.48491 * 109.47263 * 209.99876 * 15 13 11 18 18 H 1.48501 * 109.46834 * 329.99938 * 15 13 11 19 19 C 1.50695 * 109.47686 * 203.46313 * 9 8 3 20 20 C 1.38235 * 120.00104 * 313.78274 * 19 9 8 21 21 C 1.38229 * 120.00239 * 180.02562 * 20 19 9 22 22 C 1.38239 * 119.99885 * 0.06280 * 21 20 19 23 23 C 1.38231 * 120.00058 * 0.02562 * 22 21 20 24 24 C 1.38233 * 119.99926 * 133.90679 * 19 9 8 25 25 H 1.08997 * 109.47123 * 62.91886 * 1 2 3 26 26 H 1.08999 * 109.47437 * 182.91515 * 1 2 3 27 27 H 1.08999 * 109.47364 * 302.91438 * 1 2 3 28 28 H 1.09000 * 109.46891 * 239.99575 * 2 1 3 29 29 H 1.09005 * 109.47249 * 120.00445 * 2 1 3 30 30 H 1.08990 * 109.47304 * 174.99787 * 5 3 2 31 31 H 1.08998 * 109.46823 * 295.00427 * 5 3 2 32 32 H 1.09007 * 109.47121 * 299.99645 * 7 6 5 33 33 H 1.08993 * 109.47531 * 59.99658 * 7 6 5 34 34 H 1.09006 * 109.47217 * 180.02562 * 7 6 5 35 35 H 1.00906 * 110.99568 * 322.85353 * 8 3 2 36 36 H 0.96997 * 119.99397 * 180.02562 * 14 13 11 37 37 H 1.08003 * 119.99933 * 0.10190 * 20 19 9 38 38 H 1.08005 * 120.00407 * 180.33895 * 21 20 19 39 39 H 1.08001 * 119.99783 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00172 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00243 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 1.6501 2.1213 1.3146 6 8 2.1341 1.3458 2.4130 7 6 1.8213 1.8948 3.6946 8 7 3.5026 1.4447 -0.1372 9 6 3.8987 1.4143 -1.5515 10 1 3.2037 0.7873 -2.1101 11 6 3.8732 2.8137 -2.1104 12 1 4.1395 3.6509 -1.4822 13 6 3.5100 3.0251 -3.4235 14 7 3.0834 2.0207 -4.1576 15 14 3.6238 4.7380 -4.1600 16 1 4.9682 4.9302 -4.7606 17 1 2.5855 4.8955 -5.2097 18 1 3.4084 5.7500 -3.0948 19 6 5.2912 0.8509 -1.6712 20 6 6.2922 1.2971 -0.8287 21 6 7.5696 0.7807 -0.9389 22 6 7.8465 -0.1810 -1.8925 23 6 6.8460 -0.6259 -2.7363 24 6 5.5682 -0.1102 -2.6254 25 1 -0.3633 0.4678 -0.9150 26 1 -0.3634 -1.0263 0.0523 27 1 -0.3634 0.5584 0.8627 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0887 3.1183 1.3527 31 1 0.5646 2.1992 1.3753 32 1 2.2632 2.8875 3.7823 33 1 0.7394 1.9679 3.8045 34 1 2.2233 1.2484 4.4748 35 1 3.9145 0.6760 0.3703 36 1 2.8282 2.1694 -5.0815 37 1 6.0758 2.0483 -0.0835 38 1 8.3504 1.1253 -0.2770 39 1 8.8447 -0.5842 -1.9789 40 1 7.0624 -1.3769 -3.4816 41 1 4.7866 -0.4577 -3.2847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079741828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:45 Heat of formation + Delta-G solvation = -31.491518 kcal Electronic energy + Delta-G solvation = -20395.064069 eV Core-core repulsion = 17467.450866 eV Total energy + Delta-G solvation = -2927.613203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.57220 -37.83833 -35.74490 -33.38318 -31.63753 -30.00105 -29.78486 -27.91288 -26.19732 -25.39886 -23.37914 -22.46237 -21.53583 -19.88868 -19.60730 -16.46527 -16.10883 -15.81795 -15.63458 -14.96656 -14.69826 -14.23316 -14.09257 -13.85365 -13.54764 -13.04937 -12.62088 -12.46164 -12.37888 -11.92144 -11.84887 -11.51482 -11.29590 -11.24737 -11.12155 -10.96574 -10.73875 -10.28405 -10.22593 -10.17942 -9.91006 -9.64250 -9.48188 -9.18442 -8.54642 -8.01806 -7.68151 -7.18418 -6.05269 -4.08627 2.31745 2.34199 3.29237 3.35923 3.39279 4.25091 4.38919 4.73022 5.21613 5.27630 5.40030 5.47841 5.53327 5.59384 5.68290 5.78143 5.80019 5.81646 5.87653 5.91005 6.04212 6.13782 6.28191 6.39660 6.41477 6.47693 6.48453 6.57519 6.77087 6.85992 6.94833 7.01006 7.32844 7.35406 7.41584 7.56893 7.76776 7.85573 7.94250 8.20282 8.25764 8.78929 9.04838 9.54840 10.98897 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.007943 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.310153 B = 3524.306953 C = 4659.013185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.148 4.148 3 C 0.102 3.898 4 H 0.097 0.903 5 C 0.074 3.926 6 O -0.383 6.383 7 C 0.034 3.966 8 N -0.675 5.675 9 C 0.232 3.768 10 H 0.045 0.955 11 C -0.485 4.485 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.273 1.273 19 C -0.036 4.036 20 C -0.107 4.107 21 C -0.134 4.134 22 C -0.152 4.152 23 C -0.131 4.131 24 C -0.114 4.114 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.320 0.680 36 H 0.262 0.738 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -3.205 8.695 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C -0.009 4.009 4 H 0.115 0.885 5 C -0.002 4.002 6 O -0.302 6.302 7 C -0.063 4.063 8 N -0.304 5.304 9 C 0.125 3.875 10 H 0.063 0.937 11 C -0.524 4.524 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.038 4.038 20 C -0.126 4.126 21 C -0.153 4.153 22 C -0.170 4.170 23 C -0.149 4.149 24 C -0.133 4.133 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.917 -2.711 8.518 8.986 hybrid contribution -0.188 0.326 -0.836 0.917 sum -1.105 -2.385 7.683 8.120 Atomic orbital electron populations 1.21724 0.96537 1.00685 1.01330 1.22162 0.95762 0.99082 1.01708 1.21479 0.90392 0.94033 0.94967 0.88492 1.22725 0.96034 0.95022 0.86467 1.87889 1.78986 1.49838 1.13471 1.22626 0.98756 0.98647 0.86304 1.60795 1.06143 1.49203 1.14273 1.18466 0.88059 0.96731 0.84271 0.93699 1.21020 1.44316 0.91758 0.95293 0.91939 1.25013 0.94558 0.96979 0.97442 1.69905 1.43534 1.30839 1.08423 0.86579 0.77766 0.84690 0.78913 1.20662 1.21364 1.19783 1.20717 0.98741 0.91450 0.92871 1.21003 0.92127 0.99589 0.99866 1.21005 0.96823 0.98345 0.99080 1.20818 0.98256 0.99858 0.98106 1.20975 0.93822 1.00720 0.99430 1.21102 0.96301 0.97211 0.98674 0.92857 0.93654 0.93153 0.92219 0.91761 0.92842 0.94251 0.94501 0.94981 0.90455 0.86282 0.92868 0.86189 0.87610 0.87799 0.87640 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.74 37.15 0.36 -1.78 16 2 C -0.15 -2.53 5.25 -26.74 -0.14 -2.67 16 3 C 0.10 1.93 2.25 -67.71 -0.15 1.77 16 4 H 0.10 2.09 7.56 -51.93 -0.39 1.69 16 5 C 0.07 1.23 5.42 37.16 0.20 1.43 16 6 O -0.38 -6.15 9.67 -35.23 -0.34 -6.49 16 7 C 0.03 0.41 11.01 101.05 1.11 1.52 16 8 N -0.68 -14.03 5.54 -102.18 -0.57 -14.59 16 9 C 0.23 5.49 2.16 -70.02 -0.15 5.34 16 10 H 0.05 1.18 6.15 -51.93 -0.32 0.86 16 11 C -0.49 -12.79 8.12 -34.44 -0.28 -13.07 16 12 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 13 C 0.06 1.68 5.45 -17.82 -0.10 1.58 16 14 N -0.89 -24.50 12.78 55.43 0.71 -23.79 16 15 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.04 -0.82 4.65 -104.63 -0.49 -1.31 16 20 C -0.11 -2.23 9.11 -39.59 -0.36 -2.59 16 21 C -0.13 -2.48 10.05 -39.58 -0.40 -2.87 16 22 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 23 C -0.13 -2.50 10.05 -39.58 -0.40 -2.89 16 24 C -0.11 -2.49 9.67 -39.58 -0.38 -2.87 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.69 6.57 -51.93 -0.34 0.35 16 28 H 0.06 1.12 7.49 -51.93 -0.39 0.73 16 29 H 0.06 1.09 7.37 -51.93 -0.38 0.70 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.58 6.77 -51.93 -0.35 0.23 16 32 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.32 6.47 7.93 -39.29 -0.31 6.16 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.12 2.48 7.91 -52.48 -0.42 2.07 16 38 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.12 2.64 7.99 -52.49 -0.42 2.22 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -27.52 336.73 -8.39 -35.90 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.67 Total: 9.29 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -1.57 Total: -21.52 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.14 Total: -38.38 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.34 Total: -6.49 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.52 -8.39 -35.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079741828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.413 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds