Wall clock time and date at job start Mon Mar 30 2020 06:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47323 * 2 1 4 4 H 1.08998 * 109.47621 * 305.68838 * 3 2 1 5 5 C 1.53004 * 109.47274 * 65.68897 * 3 2 1 6 6 O 1.42902 * 109.47048 * 54.99866 * 5 3 2 7 7 C 1.42895 * 113.99928 * 180.02562 * 6 5 3 8 8 N 1.46901 * 109.47342 * 185.68668 * 3 2 1 9 9 C 1.46900 * 111.00100 * 86.80298 * 8 3 2 10 10 H 1.09002 * 109.47192 * 323.47064 * 9 8 3 11 11 C 1.50707 * 109.46653 * 83.46604 * 9 8 3 12 12 H 1.07998 * 119.99764 * 34.10345 * 11 9 8 13 13 C 1.37878 * 119.99980 * 214.10700 * 11 9 8 14 14 N 1.31517 * 119.99891 * 5.43002 * 13 11 9 15 15 Si 1.86800 * 120.00118 * 185.43310 * 13 11 9 16 16 H 1.48497 * 109.47037 * 89.99219 * 15 13 11 17 17 H 1.48491 * 109.47263 * 209.99876 * 15 13 11 18 18 H 1.48501 * 109.46834 * 329.99938 * 15 13 11 19 19 C 1.50695 * 109.47686 * 203.46313 * 9 8 3 20 20 C 1.38235 * 120.00104 * 313.78274 * 19 9 8 21 21 C 1.38229 * 120.00239 * 180.02562 * 20 19 9 22 22 C 1.38239 * 119.99885 * 0.06280 * 21 20 19 23 23 C 1.38231 * 120.00058 * 0.02562 * 22 21 20 24 24 C 1.38233 * 119.99926 * 133.90679 * 19 9 8 25 25 H 1.08997 * 109.47123 * 62.91886 * 1 2 3 26 26 H 1.08999 * 109.47437 * 182.91515 * 1 2 3 27 27 H 1.08999 * 109.47364 * 302.91438 * 1 2 3 28 28 H 1.09000 * 109.46891 * 239.99575 * 2 1 3 29 29 H 1.09005 * 109.47249 * 120.00445 * 2 1 3 30 30 H 1.08990 * 109.47304 * 174.99787 * 5 3 2 31 31 H 1.08998 * 109.46823 * 295.00427 * 5 3 2 32 32 H 1.09007 * 109.47121 * 299.99645 * 7 6 5 33 33 H 1.08993 * 109.47531 * 59.99658 * 7 6 5 34 34 H 1.09006 * 109.47217 * 180.02562 * 7 6 5 35 35 H 1.00906 * 110.99568 * 322.85353 * 8 3 2 36 36 H 0.96997 * 119.99397 * 180.02562 * 14 13 11 37 37 H 1.08003 * 119.99933 * 0.10190 * 20 19 9 38 38 H 1.08005 * 120.00407 * 180.33895 * 21 20 19 39 39 H 1.08001 * 119.99783 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00172 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00243 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 1.6501 2.1213 1.3146 6 8 2.1341 1.3458 2.4130 7 6 1.8213 1.8948 3.6946 8 7 3.5026 1.4447 -0.1372 9 6 3.8987 1.4143 -1.5515 10 1 3.2037 0.7873 -2.1101 11 6 3.8732 2.8137 -2.1104 12 1 4.1395 3.6509 -1.4822 13 6 3.5100 3.0251 -3.4235 14 7 3.0834 2.0207 -4.1576 15 14 3.6238 4.7380 -4.1600 16 1 4.9682 4.9302 -4.7606 17 1 2.5855 4.8955 -5.2097 18 1 3.4084 5.7500 -3.0948 19 6 5.2912 0.8509 -1.6712 20 6 6.2922 1.2971 -0.8287 21 6 7.5696 0.7807 -0.9389 22 6 7.8465 -0.1810 -1.8925 23 6 6.8460 -0.6259 -2.7363 24 6 5.5682 -0.1102 -2.6254 25 1 -0.3633 0.4678 -0.9150 26 1 -0.3634 -1.0263 0.0523 27 1 -0.3634 0.5584 0.8627 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0887 3.1183 1.3527 31 1 0.5646 2.1992 1.3753 32 1 2.2632 2.8875 3.7823 33 1 0.7394 1.9679 3.8045 34 1 2.2233 1.2484 4.4748 35 1 3.9145 0.6760 0.3703 36 1 2.8282 2.1694 -5.0815 37 1 6.0758 2.0483 -0.0835 38 1 8.3504 1.1253 -0.2770 39 1 8.8447 -0.5842 -1.9789 40 1 7.0624 -1.3769 -3.4816 41 1 4.7866 -0.4577 -3.2847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079741828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:45 Heat of formation + Delta-G solvation = -47.299366 kcal Electronic energy + Delta-G solvation = -20395.749548 eV Core-core repulsion = 17467.450866 eV Total energy + Delta-G solvation = -2928.298683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.15192 -39.20276 -37.21888 -35.11330 -33.44296 -31.55728 -31.28387 -29.28349 -27.92953 -26.69431 -24.87406 -24.08706 -23.09298 -21.59469 -21.09805 -18.40161 -17.62200 -17.22933 -16.95348 -16.56614 -16.27066 -15.73934 -15.68619 -15.30764 -14.87087 -14.63615 -14.31133 -14.00338 -13.88057 -13.52884 -13.16730 -13.07257 -12.89132 -12.75243 -12.58320 -12.46330 -12.38591 -11.93314 -11.84384 -11.67011 -11.48794 -11.39089 -11.27290 -10.58817 -10.40560 -9.58006 -9.30840 -8.92993 -8.07542 -6.18812 0.74147 0.78106 1.38514 1.40245 1.49349 2.41280 3.05769 3.07772 3.28182 3.65794 4.04024 4.13277 4.27548 4.32083 4.41810 4.45438 4.52014 4.59522 4.61320 4.66567 4.71314 4.75849 4.88920 4.91810 4.93250 5.00300 5.06800 5.15905 5.26403 5.35526 5.40832 5.48086 5.53612 5.73854 5.80080 5.83723 6.11140 6.21600 6.35901 6.41757 6.53112 6.97875 7.06587 7.47765 8.93754 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.007943 C = 0.006008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.310153 B = 3524.306953 C = 4659.013185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.100 3.900 4 H 0.063 0.937 5 C 0.086 3.914 6 O -0.401 6.401 7 C 0.027 3.973 8 N -0.672 5.672 9 C 0.244 3.756 10 H 0.008 0.992 11 C -0.493 4.493 12 H 0.049 0.951 13 C 0.018 3.982 14 N -0.916 5.916 15 Si 0.948 3.052 16 H -0.281 1.281 17 H -0.283 1.283 18 H -0.268 1.268 19 C -0.063 4.063 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.142 4.142 23 C -0.130 4.130 24 C -0.138 4.138 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.323 0.677 36 H 0.260 0.740 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -3.332 10.107 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C -0.011 4.011 4 H 0.081 0.919 5 C 0.009 3.991 6 O -0.320 6.320 7 C -0.069 4.069 8 N -0.301 5.301 9 C 0.136 3.864 10 H 0.026 0.974 11 C -0.532 4.532 12 H 0.067 0.933 13 C -0.182 4.182 14 N -0.555 5.555 15 Si 0.774 3.226 16 H -0.207 1.207 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.064 4.064 20 C -0.138 4.138 21 C -0.146 4.146 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.157 4.157 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.069 0.931 37 H 0.133 0.867 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.336 -2.834 9.954 10.355 hybrid contribution -0.525 0.301 -1.181 1.327 sum -0.189 -2.533 8.773 9.133 Atomic orbital electron populations 1.21674 0.94354 1.02060 1.01551 1.22016 0.97635 0.97453 1.00569 1.21455 0.89102 0.95035 0.95487 0.91895 1.22470 0.97120 0.93869 0.85602 1.87846 1.79422 1.50157 1.14621 1.22857 1.00154 0.99156 0.84717 1.60743 1.07560 1.49211 1.12620 1.18135 0.88484 0.94779 0.85018 0.97415 1.21176 1.43974 0.92646 0.95389 0.93296 1.25657 0.94605 1.00045 0.97881 1.70031 1.44707 1.32339 1.08443 0.85715 0.77566 0.81108 0.78232 1.20699 1.20896 1.19266 1.20642 0.98377 0.92963 0.94425 1.21028 0.93064 1.00003 0.99715 1.21395 0.96350 0.97554 0.99289 1.21286 0.99629 0.98620 0.96463 1.21285 0.92715 1.00738 1.00098 1.21070 0.97425 0.98361 0.98848 0.93836 0.91866 0.91513 0.94897 0.91146 0.94015 0.92028 0.94218 0.93234 0.88614 0.85981 0.93082 0.86736 0.84084 0.83618 0.84974 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.74 71.98 0.70 -3.33 16 2 C -0.14 -4.85 5.25 30.59 0.16 -4.68 16 3 C 0.10 3.92 2.25 44.91 0.10 4.02 16 4 H 0.06 2.89 7.56 -2.39 -0.02 2.87 16 5 C 0.09 2.82 5.42 71.98 0.39 3.21 16 6 O -0.40 -12.37 9.67 -148.98 -1.44 -13.81 16 7 C 0.03 0.61 11.01 113.37 1.25 1.85 16 8 N -0.67 -29.17 5.54 -477.18 -2.64 -31.81 16 9 C 0.24 12.19 2.16 43.42 0.09 12.29 16 10 H 0.01 0.45 6.15 -2.39 -0.01 0.44 16 11 C -0.49 -27.12 8.12 25.60 0.21 -26.91 16 12 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 13 C 0.02 0.98 5.45 84.65 0.46 1.44 16 14 N -0.92 -52.78 12.78 21.45 0.27 -52.51 16 15 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 C -0.06 -2.93 4.65 -19.87 -0.09 -3.02 16 20 C -0.12 -4.94 9.11 22.27 0.20 -4.73 16 21 C -0.13 -4.35 10.05 22.27 0.22 -4.13 16 22 C -0.14 -4.56 10.05 22.27 0.22 -4.34 16 23 C -0.13 -4.75 10.05 22.27 0.22 -4.52 16 24 C -0.14 -6.19 9.67 22.27 0.22 -5.97 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.72 6.57 -2.39 -0.02 1.70 16 28 H 0.03 1.31 7.49 -2.39 -0.02 1.29 16 29 H 0.07 2.38 7.37 -2.38 -0.02 2.36 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.73 6.77 -2.39 -0.02 1.72 16 32 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.32 13.53 7.93 -89.69 -0.71 12.82 16 36 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 37 H 0.11 4.76 7.91 -2.91 -0.02 4.74 16 38 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.09 4.49 7.99 -2.91 -0.02 4.47 16 Total: -1.00 -61.74 336.73 2.86 -58.87 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.28 Total: 31.68 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 4.36 Total: -38.83 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -2.37 Total: -84.32 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.44 Total: -13.81 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.74 2.86 -58.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079741828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.574 kcal (2) G-P(sol) polarization free energy of solvation -61.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds