Wall clock time and date at job start Mon Mar 30 2020 06:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46854 * 2 1 4 4 H 1.08997 * 109.47130 * 305.89500 * 3 2 1 5 5 C 1.53006 * 109.46746 * 185.89633 * 3 2 1 6 6 O 1.42894 * 109.47380 * 305.00031 * 5 3 2 7 7 C 1.42899 * 114.00156 * 179.97438 * 6 5 3 8 8 N 1.46895 * 109.47430 * 65.90192 * 3 2 1 9 9 C 1.46898 * 111.00250 * 210.32960 * 8 3 2 10 10 H 1.09004 * 109.47432 * 33.68748 * 9 8 3 11 11 C 1.50705 * 109.46863 * 273.69040 * 9 8 3 12 12 H 1.07995 * 120.00157 * 329.55595 * 11 9 8 13 13 C 1.37881 * 119.99696 * 149.54956 * 11 9 8 14 14 N 1.31509 * 119.99567 * 186.33907 * 13 11 9 15 15 Si 1.86793 * 120.00302 * 6.34961 * 13 11 9 16 16 H 1.48496 * 109.47582 * 84.69818 * 15 13 11 17 17 H 1.48496 * 109.47132 * 204.70397 * 15 13 11 18 18 H 1.48505 * 109.46863 * 324.69692 * 15 13 11 19 19 C 1.50698 * 109.47494 * 153.68954 * 9 8 3 20 20 C 1.38236 * 120.00008 * 46.86941 * 19 9 8 21 21 C 1.38231 * 120.00094 * 179.78865 * 20 19 9 22 22 C 1.38234 * 120.00080 * 0.43795 * 21 20 19 23 23 C 1.38243 * 119.99835 * 359.81030 * 22 21 20 24 24 C 1.38229 * 120.00058 * 227.13921 * 19 9 8 25 25 H 1.09002 * 109.47055 * 180.88385 * 1 2 3 26 26 H 1.09002 * 109.46864 * 300.87987 * 1 2 3 27 27 H 1.08998 * 109.47124 * 60.88685 * 1 2 3 28 28 H 1.09004 * 109.46607 * 239.99857 * 2 1 3 29 29 H 1.08999 * 109.47171 * 120.00478 * 2 1 3 30 30 H 1.09005 * 109.47262 * 184.99757 * 5 3 2 31 31 H 1.09008 * 109.46844 * 65.00258 * 5 3 2 32 32 H 1.09003 * 109.46828 * 300.00078 * 7 6 5 33 33 H 1.09003 * 109.47427 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47106 * 60.00023 * 7 6 5 35 35 H 1.00907 * 110.99543 * 334.27571 * 8 3 2 36 36 H 0.97003 * 120.00041 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99791 * 359.97438 * 20 19 9 38 38 H 1.08000 * 119.99694 * 180.27358 * 21 20 19 39 39 H 1.07992 * 120.00039 * 179.83626 * 22 21 20 40 40 H 1.08000 * 119.99619 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00032 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5930 1.9858 -0.8325 5 6 3.5628 1.4450 -0.1482 6 8 4.1426 0.6357 0.8769 7 6 5.5692 0.5698 0.8283 8 7 1.6701 2.0927 1.2642 9 6 1.4653 3.5349 1.0743 10 1 1.0487 3.7154 0.0834 11 6 2.7853 4.2507 1.2024 12 1 3.5543 3.8540 1.8485 13 6 3.0111 5.4122 0.4945 14 7 4.2024 5.9691 0.5076 15 14 1.6250 6.1948 -0.4830 16 1 0.8144 7.0589 0.4122 17 1 2.1957 7.0163 -1.5805 18 1 0.7629 5.1310 -1.0579 19 6 0.5114 4.0490 2.1215 20 6 0.6847 3.6969 3.4470 21 6 -0.1877 4.1721 4.4082 22 6 -1.2389 4.9921 4.0427 23 6 -1.4153 5.3401 2.7165 24 6 -0.5403 4.8683 1.7559 25 1 -0.3633 -1.0276 0.0159 26 1 -0.3633 0.5275 0.8820 27 1 -0.3633 0.5000 -0.8978 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9349 2.4657 -0.0593 31 1 3.8335 1.0434 -1.1248 32 1 5.8811 0.1498 -0.1280 33 1 5.9316 -0.0626 1.6388 34 1 5.9832 1.5722 0.9372 35 1 0.8515 1.6612 1.6667 36 1 4.3612 6.7864 0.0099 37 1 1.5036 3.0530 3.7320 38 1 -0.0497 3.9005 5.4443 39 1 -1.9220 5.3611 4.7933 40 1 -2.2368 5.9804 2.4309 41 1 -0.6780 5.1402 0.7198 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079741833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:53 Heat of formation + Delta-G solvation = -21.685916 kcal Electronic energy + Delta-G solvation = -20712.116655 eV Core-core repulsion = 17784.928655 eV Total energy + Delta-G solvation = -2927.188000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.81949 -37.65648 -35.78699 -33.49021 -31.78954 -30.26167 -29.88222 -28.13078 -26.52075 -25.45158 -22.93575 -22.48089 -21.90919 -19.93895 -19.56794 -17.04331 -16.16574 -15.82997 -15.27409 -14.86673 -14.71810 -14.52424 -14.25670 -13.89798 -13.70721 -12.85028 -12.79719 -12.70646 -12.48992 -12.22876 -12.09208 -11.92156 -11.48098 -11.09322 -10.91801 -10.84799 -10.72964 -10.56264 -10.36805 -10.10314 -9.97271 -9.73269 -9.48778 -8.88902 -8.57317 -8.22924 -7.88291 -7.30431 -6.13858 -4.08488 2.06518 2.12519 3.21716 3.27918 3.32039 4.33779 4.49341 4.54574 5.04916 5.15545 5.28415 5.44656 5.48140 5.51144 5.56248 5.69304 5.77411 5.89479 5.93969 6.02080 6.08751 6.15202 6.16432 6.20224 6.25334 6.26037 6.28761 6.49737 6.63962 6.70540 6.72957 6.81841 6.88536 7.11590 7.18003 7.45366 7.53795 7.75244 7.86093 8.05258 8.31178 8.69627 9.02562 9.49555 10.98148 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.008742 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.928081 B = 3202.335936 C = 4068.977244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C 0.103 3.897 4 H 0.048 0.952 5 C 0.070 3.930 6 O -0.374 6.374 7 C 0.035 3.965 8 N -0.660 5.660 9 C 0.208 3.792 10 H 0.020 0.980 11 C -0.477 4.477 12 H 0.087 0.913 13 C 0.073 3.927 14 N -0.892 5.892 15 Si 0.859 3.141 16 H -0.269 1.269 17 H -0.291 1.291 18 H -0.265 1.265 19 C -0.049 4.049 20 C -0.096 4.096 21 C -0.126 4.126 22 C -0.147 4.147 23 C -0.124 4.124 24 C -0.140 4.140 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.321 0.679 36 H 0.264 0.736 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.611 -8.059 0.231 10.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.007 4.007 4 H 0.066 0.934 5 C -0.007 4.007 6 O -0.293 6.293 7 C -0.063 4.063 8 N -0.292 5.292 9 C 0.100 3.900 10 H 0.037 0.963 11 C -0.515 4.515 12 H 0.104 0.896 13 C -0.130 4.130 14 N -0.530 5.530 15 Si 0.688 3.312 16 H -0.194 1.194 17 H -0.217 1.217 18 H -0.191 1.191 19 C -0.050 4.050 20 C -0.115 4.115 21 C -0.145 4.145 22 C -0.165 4.165 23 C -0.142 4.142 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.140 0.860 36 H 0.074 0.926 37 H 0.145 0.855 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.949 -7.922 0.498 9.919 hybrid contribution -1.278 1.019 -1.257 2.062 sum -7.228 -6.903 -0.758 10.023 Atomic orbital electron populations 1.21851 0.96710 1.01110 1.01623 1.21674 0.94720 0.97189 1.02626 1.21454 0.93948 0.93260 0.92076 0.93405 1.22732 0.93481 0.96570 0.87876 1.87857 1.18129 1.70080 1.53185 1.22598 0.82994 1.00819 0.99852 1.60609 1.40535 1.03312 1.24702 1.18970 0.94131 0.85621 0.91250 0.96256 1.20902 0.97329 1.06733 1.26523 0.89551 1.24977 0.94930 0.96936 0.96133 1.69883 1.20571 1.20178 1.42354 0.87227 0.83423 0.80134 0.80457 1.19392 1.21719 1.19075 1.20767 0.92300 0.95472 0.96509 1.21007 0.98451 0.99758 0.92244 1.21092 0.95830 0.98653 0.98879 1.20872 0.99202 1.00752 0.95708 1.20925 0.99412 1.00414 0.93472 1.21023 0.95918 1.00060 0.98837 0.93006 0.92597 0.93253 0.92268 0.90456 0.89835 0.95645 0.95538 0.90796 0.93946 0.86002 0.92599 0.85482 0.87058 0.87336 0.87350 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.78 37.16 0.36 -1.69 16 2 C -0.12 -1.86 5.17 -26.73 -0.14 -2.00 16 3 C 0.10 1.89 2.44 -67.71 -0.16 1.72 16 4 H 0.05 0.91 7.31 -51.93 -0.38 0.53 16 5 C 0.07 1.36 5.62 37.16 0.21 1.57 16 6 O -0.37 -7.14 9.89 -35.23 -0.35 -7.49 16 7 C 0.03 0.55 11.01 101.05 1.11 1.66 16 8 N -0.66 -13.18 5.69 -102.18 -0.58 -13.76 16 9 C 0.21 4.71 1.87 -70.02 -0.13 4.58 16 10 H 0.02 0.47 4.44 -51.93 -0.23 0.24 16 11 C -0.48 -12.71 7.17 -34.44 -0.25 -12.96 16 12 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 15 Si 0.86 20.96 24.53 -169.99 -4.17 16.79 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.27 -6.12 6.00 56.52 0.34 -5.78 16 19 C -0.05 -1.05 4.43 -104.63 -0.46 -1.51 16 20 C -0.10 -1.91 9.07 -39.58 -0.36 -2.27 16 21 C -0.13 -2.19 10.05 -39.59 -0.40 -2.58 16 22 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 23 C -0.12 -2.20 10.05 -39.58 -0.40 -2.60 16 24 C -0.14 -2.84 8.43 -39.59 -0.33 -3.17 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.77 6.49 -51.93 -0.34 0.43 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.22 7.76 -51.93 -0.40 0.82 16 30 H 0.08 1.93 6.36 -51.93 -0.33 1.60 16 31 H 0.03 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.32 5.89 5.90 -39.29 -0.23 5.65 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.13 2.55 7.93 -52.49 -0.42 2.13 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.11 2.14 6.12 -52.48 -0.32 1.82 16 LS Contribution 324.72 15.07 4.89 4.89 Total: -1.00 -29.02 324.72 -7.38 -36.39 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.50 Total: 8.90 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -1.44 Total: -20.17 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.19 Total: -39.33 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.35 Total: -7.49 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.17 Total: 16.79 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.02 -7.38 -36.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079741833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.707 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds