Wall clock time and date at job start Mon Mar 30 2020 06:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46854 * 2 1 4 4 H 1.08997 * 109.47130 * 305.89500 * 3 2 1 5 5 C 1.53006 * 109.46746 * 185.89633 * 3 2 1 6 6 O 1.42894 * 109.47380 * 305.00031 * 5 3 2 7 7 C 1.42899 * 114.00156 * 179.97438 * 6 5 3 8 8 N 1.46895 * 109.47430 * 65.90192 * 3 2 1 9 9 C 1.46898 * 111.00250 * 210.32960 * 8 3 2 10 10 H 1.09004 * 109.47432 * 33.68748 * 9 8 3 11 11 C 1.50705 * 109.46863 * 273.69040 * 9 8 3 12 12 H 1.07995 * 120.00157 * 329.55595 * 11 9 8 13 13 C 1.37881 * 119.99696 * 149.54956 * 11 9 8 14 14 N 1.31509 * 119.99567 * 186.33907 * 13 11 9 15 15 Si 1.86793 * 120.00302 * 6.34961 * 13 11 9 16 16 H 1.48496 * 109.47582 * 84.69818 * 15 13 11 17 17 H 1.48496 * 109.47132 * 204.70397 * 15 13 11 18 18 H 1.48505 * 109.46863 * 324.69692 * 15 13 11 19 19 C 1.50698 * 109.47494 * 153.68954 * 9 8 3 20 20 C 1.38236 * 120.00008 * 46.86941 * 19 9 8 21 21 C 1.38231 * 120.00094 * 179.78865 * 20 19 9 22 22 C 1.38234 * 120.00080 * 0.43795 * 21 20 19 23 23 C 1.38243 * 119.99835 * 359.81030 * 22 21 20 24 24 C 1.38229 * 120.00058 * 227.13921 * 19 9 8 25 25 H 1.09002 * 109.47055 * 180.88385 * 1 2 3 26 26 H 1.09002 * 109.46864 * 300.87987 * 1 2 3 27 27 H 1.08998 * 109.47124 * 60.88685 * 1 2 3 28 28 H 1.09004 * 109.46607 * 239.99857 * 2 1 3 29 29 H 1.08999 * 109.47171 * 120.00478 * 2 1 3 30 30 H 1.09005 * 109.47262 * 184.99757 * 5 3 2 31 31 H 1.09008 * 109.46844 * 65.00258 * 5 3 2 32 32 H 1.09003 * 109.46828 * 300.00078 * 7 6 5 33 33 H 1.09003 * 109.47427 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47106 * 60.00023 * 7 6 5 35 35 H 1.00907 * 110.99543 * 334.27571 * 8 3 2 36 36 H 0.97003 * 120.00041 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99791 * 359.97438 * 20 19 9 38 38 H 1.08000 * 119.99694 * 180.27358 * 21 20 19 39 39 H 1.07992 * 120.00039 * 179.83626 * 22 21 20 40 40 H 1.08000 * 119.99619 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.00032 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5930 1.9858 -0.8325 5 6 3.5628 1.4450 -0.1482 6 8 4.1426 0.6357 0.8769 7 6 5.5692 0.5698 0.8283 8 7 1.6701 2.0927 1.2642 9 6 1.4653 3.5349 1.0743 10 1 1.0487 3.7154 0.0834 11 6 2.7853 4.2507 1.2024 12 1 3.5543 3.8540 1.8485 13 6 3.0111 5.4122 0.4945 14 7 4.2024 5.9691 0.5076 15 14 1.6250 6.1948 -0.4830 16 1 0.8144 7.0589 0.4122 17 1 2.1957 7.0163 -1.5805 18 1 0.7629 5.1310 -1.0579 19 6 0.5114 4.0490 2.1215 20 6 0.6847 3.6969 3.4470 21 6 -0.1877 4.1721 4.4082 22 6 -1.2389 4.9921 4.0427 23 6 -1.4153 5.3401 2.7165 24 6 -0.5403 4.8683 1.7559 25 1 -0.3633 -1.0276 0.0159 26 1 -0.3633 0.5275 0.8820 27 1 -0.3633 0.5000 -0.8978 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9349 2.4657 -0.0593 31 1 3.8335 1.0434 -1.1248 32 1 5.8811 0.1498 -0.1280 33 1 5.9316 -0.0626 1.6388 34 1 5.9832 1.5722 0.9372 35 1 0.8515 1.6612 1.6667 36 1 4.3612 6.7864 0.0099 37 1 1.5036 3.0530 3.7320 38 1 -0.0497 3.9005 5.4443 39 1 -1.9220 5.3611 4.7933 40 1 -2.2368 5.9804 2.4309 41 1 -0.6780 5.1402 0.7198 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079741833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:53 Heat of formation + Delta-G solvation = -40.744709 kcal Electronic energy + Delta-G solvation = -20712.943107 eV Core-core repulsion = 17784.928655 eV Total energy + Delta-G solvation = -2928.014451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33930 -39.12696 -37.29812 -35.18496 -33.64248 -31.69818 -31.24351 -29.59628 -28.41133 -26.85972 -24.42846 -24.01135 -23.34957 -21.54396 -21.06056 -19.03213 -17.65741 -17.37644 -16.76171 -16.51010 -16.31492 -16.01584 -15.81809 -15.34104 -15.10115 -14.74605 -14.31401 -14.18193 -13.77896 -13.75541 -13.52844 -13.43713 -12.92664 -12.75714 -12.54091 -12.28810 -12.22558 -12.01993 -11.85318 -11.75517 -11.46583 -11.44802 -11.29458 -10.75251 -10.32167 -9.67747 -9.40174 -8.97005 -8.28069 -6.25283 0.60836 0.67372 1.25343 1.30275 1.35171 2.29585 2.95646 3.08967 3.14984 3.51534 4.01772 4.10778 4.14718 4.24321 4.32022 4.34031 4.40614 4.48152 4.58348 4.63334 4.69508 4.73640 4.80101 4.86078 4.89072 4.93719 4.96895 5.11945 5.20187 5.26832 5.29596 5.34054 5.48309 5.57382 5.69487 5.74298 5.94294 6.11704 6.28048 6.42995 6.60037 6.79812 6.97210 7.36179 8.88080 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.008742 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.928081 B = 3202.335936 C = 4068.977244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C 0.098 3.902 4 H 0.041 0.959 5 C 0.075 3.925 6 O -0.388 6.388 7 C 0.031 3.969 8 N -0.665 5.665 9 C 0.219 3.781 10 H 0.010 0.990 11 C -0.462 4.462 12 H 0.036 0.964 13 C 0.017 3.983 14 N -0.943 5.943 15 Si 0.916 3.084 16 H -0.263 1.263 17 H -0.293 1.293 18 H -0.246 1.246 19 C -0.075 4.075 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.136 4.136 23 C -0.124 4.124 24 C -0.158 4.158 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.017 0.983 35 H 0.332 0.668 36 H 0.263 0.737 37 H 0.112 0.888 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -8.911 0.699 13.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.012 4.012 4 H 0.059 0.941 5 C -0.002 4.002 6 O -0.307 6.307 7 C -0.065 4.065 8 N -0.298 5.298 9 C 0.110 3.890 10 H 0.028 0.972 11 C -0.501 4.501 12 H 0.054 0.946 13 C -0.180 4.180 14 N -0.584 5.584 15 Si 0.742 3.258 16 H -0.188 1.188 17 H -0.220 1.220 18 H -0.170 1.170 19 C -0.076 4.076 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.154 4.154 23 C -0.142 4.142 24 C -0.177 4.177 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.036 0.964 35 H 0.153 0.847 36 H 0.072 0.928 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.974 -8.805 0.975 12.610 hybrid contribution -0.313 1.188 -1.273 1.769 sum -9.287 -7.617 -0.298 12.015 Atomic orbital electron populations 1.21813 0.95061 1.02597 1.01346 1.21568 0.96051 0.94334 1.03076 1.21556 0.93277 0.95445 0.90960 0.94104 1.22589 0.94316 0.94158 0.89164 1.87821 1.19829 1.69578 1.53456 1.22764 0.81408 1.00121 1.02255 1.60424 1.41146 1.02264 1.25939 1.18670 0.92199 0.86626 0.91483 0.97207 1.20915 0.98160 1.06437 1.24583 0.94577 1.25671 0.97003 0.97685 0.97654 1.70037 1.22795 1.21056 1.44511 0.86302 0.80805 0.79586 0.79069 1.18785 1.21994 1.17011 1.20602 0.93425 0.97044 0.96531 1.21003 0.99087 1.00555 0.92492 1.21439 0.95041 0.97839 0.99751 1.21353 0.98856 0.99007 0.96169 1.21321 0.99384 0.99995 0.93479 1.21145 0.96567 1.00469 0.99534 0.90594 0.93397 0.93007 0.90570 0.91155 0.94749 0.93270 0.93102 0.88318 0.96396 0.84734 0.92826 0.86990 0.84053 0.83276 0.84209 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.78 71.98 0.70 -2.94 16 2 C -0.11 -3.20 5.17 30.59 0.16 -3.04 16 3 C 0.10 3.61 2.44 44.92 0.11 3.72 16 4 H 0.04 1.57 7.31 -2.39 -0.02 1.55 16 5 C 0.08 2.99 5.62 71.98 0.40 3.39 16 6 O -0.39 -15.06 9.89 -148.98 -1.47 -16.54 16 7 C 0.03 1.00 11.01 113.37 1.25 2.25 16 8 N -0.66 -27.20 5.69 -477.19 -2.72 -29.92 16 9 C 0.22 10.15 1.87 43.42 0.08 10.23 16 10 H 0.01 0.50 4.44 -2.38 -0.01 0.48 16 11 C -0.46 -26.03 7.17 25.60 0.18 -25.85 16 12 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 13 C 0.02 1.01 5.47 84.66 0.46 1.47 16 14 N -0.94 -58.77 13.96 21.45 0.30 -58.47 16 15 Si 0.92 44.24 24.53 68.60 1.68 45.92 16 16 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 18 H -0.25 -10.94 6.00 99.48 0.60 -10.34 16 19 C -0.07 -3.18 4.43 -19.87 -0.09 -3.27 16 20 C -0.11 -4.42 9.07 22.27 0.20 -4.22 16 21 C -0.12 -3.89 10.05 22.27 0.22 -3.67 16 22 C -0.14 -3.91 10.05 22.27 0.22 -3.69 16 23 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 24 C -0.16 -6.17 8.43 22.27 0.19 -5.98 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.23 6.49 -2.39 -0.02 1.21 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.07 2.12 7.76 -2.39 -0.02 2.10 16 30 H 0.03 1.70 6.36 -2.38 -0.02 1.69 16 31 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.33 12.23 5.90 -89.69 -0.53 11.70 16 36 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.11 4.62 7.93 -2.91 -0.02 4.60 16 38 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.10 3.96 6.12 -2.91 -0.02 3.94 16 Total: -1.00 -66.84 324.72 2.48 -64.37 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.36 Total: 29.95 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 4.32 Total: -35.32 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.42 Total: -88.39 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -1.47 Total: -16.54 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.68 Total: 45.92 kcal Total: -66.84 2.48 -64.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079741833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.621 kcal (2) G-P(sol) polarization free energy of solvation -66.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds