Wall clock time and date at job start Mon Mar 30 2020 07:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 N 1.46493 * 109.47267 * 120.00291 * 2 1 3 5 5 C 1.36943 * 120.00052 * 300.58117 * 4 2 1 6 6 H 1.08004 * 119.99647 * 36.01085 * 5 4 2 7 7 C 1.38806 * 120.00116 * 216.00386 * 5 4 2 8 8 N 1.31618 * 120.00198 * 214.45628 * 7 5 4 9 9 Si 1.86800 * 120.00122 * 34.46191 * 7 5 4 10 10 H 1.48498 * 109.47198 * 95.18217 * 9 7 5 11 11 H 1.48498 * 109.47373 * 215.18805 * 9 7 5 12 12 H 1.48501 * 109.47137 * 335.18750 * 9 7 5 13 13 C 1.46500 * 120.00392 * 120.58293 * 4 2 1 14 14 C 1.52998 * 109.46893 * 275.89407 * 13 4 2 15 15 C 1.53010 * 109.47011 * 179.97438 * 14 13 4 16 16 O 1.42895 * 109.46913 * 179.97438 * 15 14 13 17 17 C 1.35902 * 116.99587 * 179.97438 * 16 15 14 18 18 C 1.38731 * 120.05547 * 180.02562 * 17 16 15 19 19 C 1.38145 * 119.94907 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.04946 * 0.02562 * 19 18 17 21 21 C 1.38265 * 120.11401 * 359.95826 * 20 19 18 22 22 C 1.38138 * 120.05577 * 0.04334 * 21 20 19 23 23 H 1.09003 * 109.47307 * 306.31439 * 1 2 3 24 24 H 1.09005 * 109.47649 * 66.31316 * 1 2 3 25 25 H 1.08998 * 109.47156 * 186.31142 * 1 2 3 26 26 H 1.08999 * 109.47125 * 240.00758 * 2 1 3 27 27 H 1.08996 * 109.47118 * 182.79573 * 3 2 1 28 28 H 1.09000 * 109.47309 * 302.80119 * 3 2 1 29 29 H 1.09002 * 109.46282 * 62.79855 * 3 2 1 30 30 H 0.96997 * 120.00350 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47447 * 155.89110 * 13 4 2 32 32 H 1.09004 * 109.47069 * 35.89117 * 13 4 2 33 33 H 1.08999 * 109.47316 * 59.99623 * 14 13 4 34 34 H 1.08997 * 109.47019 * 299.99361 * 14 13 4 35 35 H 1.08999 * 109.47126 * 59.99828 * 15 14 13 36 36 H 1.08997 * 109.46969 * 299.99711 * 15 14 13 37 37 H 1.08005 * 120.02548 * 359.70552 * 18 17 16 38 38 H 1.07993 * 119.97904 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.93962 * 179.97438 * 20 19 18 40 40 H 1.07998 * 119.96942 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.03064 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6777 -0.2298 2.4398 6 1 0.6971 0.1895 2.6105 7 6 2.5926 -0.3019 3.4812 8 7 2.1757 -0.5274 4.7091 9 14 4.4156 -0.0785 3.1401 10 1 4.7945 1.3369 3.3810 11 1 5.1996 -0.9611 4.0410 12 1 4.7019 -0.4339 1.7270 13 6 2.8711 -1.8742 1.0617 14 6 1.9961 -3.1128 0.8590 15 6 2.8867 -4.3490 0.7180 16 8 2.0695 -5.5058 0.5293 17 6 2.7091 -6.6962 0.3855 18 6 1.9775 -7.8600 0.1982 19 6 2.6300 -9.0688 0.0517 20 6 4.0112 -9.1194 0.0922 21 6 4.7427 -7.9610 0.2785 22 6 4.0949 -6.7498 0.4254 23 1 -0.3634 0.6086 0.8281 24 1 -0.3634 0.4129 -0.9411 25 1 -0.3633 -1.0214 0.1130 26 1 1.8933 -0.5137 -0.8900 27 1 3.1288 1.4430 -0.0501 28 1 1.6362 1.9707 -0.8638 29 1 1.7181 1.9416 0.9141 30 1 2.8151 -0.5781 5.4368 31 1 3.4691 -1.9957 1.9649 32 1 3.5309 -1.7510 0.2029 33 1 1.3981 -2.9914 -0.0442 34 1 1.3363 -3.2361 1.7178 35 1 3.4850 -4.4706 1.6210 36 1 3.5462 -4.2255 -0.1410 37 1 0.8985 -7.8215 0.1712 38 1 2.0610 -9.9749 -0.0945 39 1 4.5195 -10.0655 -0.0221 40 1 5.8214 -8.0032 0.3093 41 1 4.6666 -5.8453 0.5713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080216488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:33 Heat of formation + Delta-G solvation = -0.564274 kcal Electronic energy + Delta-G solvation = -19694.684302 eV Core-core repulsion = 16768.412205 eV Total energy + Delta-G solvation = -2926.272097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98534 -37.52738 -36.79969 -33.03038 -32.15419 -31.02885 -30.06926 -29.09260 -26.31406 -25.57007 -23.60216 -22.64938 -21.93245 -20.80304 -19.43500 -18.18585 -16.47501 -15.99029 -15.91875 -15.65444 -14.92966 -14.74276 -14.43926 -13.72741 -13.50264 -13.25894 -13.17216 -12.95625 -12.42681 -12.20046 -11.96448 -11.82643 -11.57684 -11.47876 -11.36725 -11.07543 -10.72558 -10.63569 -10.53036 -10.41342 -10.26316 -9.96714 -9.74237 -9.42995 -9.04800 -8.43199 -8.16038 -6.83658 -6.07976 -3.33551 1.29765 1.44219 3.32593 3.37928 3.47937 3.52074 3.77113 4.53945 4.79410 4.83476 4.91517 5.07976 5.26203 5.29666 5.31325 5.36608 5.52153 5.60552 5.74848 5.81386 5.95641 6.00246 6.02004 6.19671 6.26785 6.30388 6.33924 6.36351 6.40871 6.47456 6.56269 6.64891 6.71252 6.78227 6.81821 6.99903 7.11681 7.15672 7.57460 8.02339 8.40635 9.01154 9.73409 10.16449 11.07819 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.004596 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.714500 B = 6091.170940 C = 6688.040357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 C -0.155 4.155 4 N -0.595 5.595 5 C -0.271 4.271 6 H 0.078 0.922 7 C 0.046 3.954 8 N -0.879 5.879 9 Si 0.842 3.158 10 H -0.291 1.291 11 H -0.295 1.295 12 H -0.263 1.263 13 C 0.158 3.842 14 C -0.136 4.136 15 C 0.061 3.939 16 O -0.313 6.313 17 C 0.138 3.862 18 C -0.159 4.159 19 C -0.083 4.083 20 C -0.169 4.169 21 C -0.081 4.081 22 C -0.212 4.212 23 H 0.056 0.944 24 H 0.037 0.963 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.262 0.738 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -11.884 -10.628 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.058 3.942 3 C -0.214 4.214 4 N -0.317 5.317 5 C -0.398 4.398 6 H 0.095 0.905 7 C -0.156 4.156 8 N -0.518 5.518 9 Si 0.669 3.331 10 H -0.218 1.218 11 H -0.222 1.222 12 H -0.187 1.187 13 C 0.031 3.969 14 C -0.176 4.176 15 C -0.015 4.015 16 O -0.226 6.226 17 C 0.092 3.908 18 C -0.177 4.177 19 C -0.101 4.101 20 C -0.187 4.187 21 C -0.099 4.099 22 C -0.231 4.231 23 H 0.075 0.925 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.759 -11.818 -10.433 16.004 hybrid contribution 1.410 0.246 0.093 1.435 sum 4.170 -11.571 -10.340 16.068 Atomic orbital electron populations 1.22135 0.97822 1.01355 0.99847 1.20400 0.92865 0.91847 0.89060 1.22147 1.00122 0.98260 1.00842 1.44165 1.59266 1.25881 1.02395 1.18575 0.97642 1.39698 0.83924 0.90478 1.25427 0.97278 0.98096 0.94751 1.70081 1.34977 1.46178 1.00594 0.87404 0.89072 0.78107 0.78563 1.21849 1.22225 1.18749 1.21015 0.91715 0.85272 0.98905 1.22345 0.99846 0.92178 1.03202 1.23013 0.94447 0.83732 1.00294 1.86137 1.36664 1.13605 1.86187 1.19164 0.90982 0.86381 0.94271 1.20484 1.00341 0.90349 1.06543 1.20934 0.94477 0.96838 0.97855 1.21005 0.94182 0.98264 1.05247 1.20941 0.99709 0.92026 0.97227 1.21357 0.93586 0.99573 1.08556 0.92505 0.94428 0.93236 0.93329 0.93966 0.94345 0.91750 0.92783 0.92542 0.94756 0.91928 0.90198 0.92154 0.92588 0.85293 0.85647 0.86232 0.86035 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.03 37.16 0.34 -2.42 16 2 C 0.16 3.19 3.36 -67.93 -0.23 2.96 16 3 C -0.15 -2.87 9.22 37.16 0.34 -2.53 16 4 N -0.60 -13.52 2.02 -165.67 -0.33 -13.85 16 5 C -0.27 -7.21 8.50 -15.06 -0.13 -7.34 16 6 H 0.08 2.23 7.12 -52.48 -0.37 1.86 16 7 C 0.05 1.29 4.98 -17.43 -0.09 1.20 16 8 N -0.88 -26.06 13.97 55.49 0.78 -25.29 16 9 Si 0.84 20.93 26.29 -169.99 -4.47 16.46 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 12 H -0.26 -6.18 5.95 56.52 0.34 -5.85 16 13 C 0.16 3.27 3.85 -4.04 -0.02 3.25 16 14 C -0.14 -2.52 5.90 -26.73 -0.16 -2.68 16 15 C 0.06 0.98 4.74 37.16 0.18 1.15 16 16 O -0.31 -5.22 10.14 -19.43 -0.20 -5.41 16 17 C 0.14 2.05 6.69 -39.22 -0.26 1.79 16 18 C -0.16 -2.05 9.99 -39.43 -0.39 -2.45 16 19 C -0.08 -0.90 10.04 -39.60 -0.40 -1.29 16 20 C -0.17 -1.77 10.04 -39.56 -0.40 -2.17 16 21 C -0.08 -0.92 10.04 -39.61 -0.40 -1.32 16 22 C -0.21 -2.83 9.04 -39.43 -0.36 -3.18 16 23 H 0.06 1.11 7.25 -51.93 -0.38 0.73 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.86 7.88 -51.93 -0.41 0.45 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.31 7.58 -51.93 -0.39 0.92 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 1.27 4.57 -51.93 -0.24 1.04 16 32 H 0.03 0.65 8.05 -51.93 -0.42 0.23 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.06 0.96 7.66 -51.93 -0.40 0.57 16 36 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 37 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.13 1.61 6.30 -52.49 -0.33 1.28 16 LS Contribution 331.46 15.07 4.99 4.99 Total: -1.00 -29.49 331.46 -7.96 -37.44 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.76 Total: 0.68 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.97 Total: -15.03 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.44 Total: -39.14 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.20 Total: -5.41 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.47 Total: 16.46 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.49 -7.96 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.881 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds