Wall clock time and date at job start Mon Mar 30 2020 07:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 N 1.46493 * 109.47267 * 120.00291 * 2 1 3 5 5 C 1.36943 * 120.00052 * 300.58117 * 4 2 1 6 6 H 1.08004 * 119.99647 * 36.01085 * 5 4 2 7 7 C 1.38806 * 120.00116 * 216.00386 * 5 4 2 8 8 N 1.31618 * 120.00198 * 214.45628 * 7 5 4 9 9 Si 1.86800 * 120.00122 * 34.46191 * 7 5 4 10 10 H 1.48498 * 109.47198 * 95.18217 * 9 7 5 11 11 H 1.48498 * 109.47373 * 215.18805 * 9 7 5 12 12 H 1.48501 * 109.47137 * 335.18750 * 9 7 5 13 13 C 1.46500 * 120.00392 * 120.58293 * 4 2 1 14 14 C 1.52998 * 109.46893 * 275.89407 * 13 4 2 15 15 C 1.53010 * 109.47011 * 179.97438 * 14 13 4 16 16 O 1.42895 * 109.46913 * 179.97438 * 15 14 13 17 17 C 1.35902 * 116.99587 * 179.97438 * 16 15 14 18 18 C 1.38731 * 120.05547 * 180.02562 * 17 16 15 19 19 C 1.38145 * 119.94907 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.04946 * 0.02562 * 19 18 17 21 21 C 1.38265 * 120.11401 * 359.95826 * 20 19 18 22 22 C 1.38138 * 120.05577 * 0.04334 * 21 20 19 23 23 H 1.09003 * 109.47307 * 306.31439 * 1 2 3 24 24 H 1.09005 * 109.47649 * 66.31316 * 1 2 3 25 25 H 1.08998 * 109.47156 * 186.31142 * 1 2 3 26 26 H 1.08999 * 109.47125 * 240.00758 * 2 1 3 27 27 H 1.08996 * 109.47118 * 182.79573 * 3 2 1 28 28 H 1.09000 * 109.47309 * 302.80119 * 3 2 1 29 29 H 1.09002 * 109.46282 * 62.79855 * 3 2 1 30 30 H 0.96997 * 120.00350 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47447 * 155.89110 * 13 4 2 32 32 H 1.09004 * 109.47069 * 35.89117 * 13 4 2 33 33 H 1.08999 * 109.47316 * 59.99623 * 14 13 4 34 34 H 1.08997 * 109.47019 * 299.99361 * 14 13 4 35 35 H 1.08999 * 109.47126 * 59.99828 * 15 14 13 36 36 H 1.08997 * 109.46969 * 299.99711 * 15 14 13 37 37 H 1.08005 * 120.02548 * 359.70552 * 18 17 16 38 38 H 1.07993 * 119.97904 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.93962 * 179.97438 * 20 19 18 40 40 H 1.07998 * 119.96942 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.03064 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6777 -0.2298 2.4398 6 1 0.6971 0.1895 2.6105 7 6 2.5926 -0.3019 3.4812 8 7 2.1757 -0.5274 4.7091 9 14 4.4156 -0.0785 3.1401 10 1 4.7945 1.3369 3.3810 11 1 5.1996 -0.9611 4.0410 12 1 4.7019 -0.4339 1.7270 13 6 2.8711 -1.8742 1.0617 14 6 1.9961 -3.1128 0.8590 15 6 2.8867 -4.3490 0.7180 16 8 2.0695 -5.5058 0.5293 17 6 2.7091 -6.6962 0.3855 18 6 1.9775 -7.8600 0.1982 19 6 2.6300 -9.0688 0.0517 20 6 4.0112 -9.1194 0.0922 21 6 4.7427 -7.9610 0.2785 22 6 4.0949 -6.7498 0.4254 23 1 -0.3634 0.6086 0.8281 24 1 -0.3634 0.4129 -0.9411 25 1 -0.3633 -1.0214 0.1130 26 1 1.8933 -0.5137 -0.8900 27 1 3.1288 1.4430 -0.0501 28 1 1.6362 1.9707 -0.8638 29 1 1.7181 1.9416 0.9141 30 1 2.8151 -0.5781 5.4368 31 1 3.4691 -1.9957 1.9649 32 1 3.5309 -1.7510 0.2029 33 1 1.3981 -2.9914 -0.0442 34 1 1.3363 -3.2361 1.7178 35 1 3.4850 -4.4706 1.6210 36 1 3.5462 -4.2255 -0.1410 37 1 0.8985 -7.8215 0.1712 38 1 2.0610 -9.9749 -0.0945 39 1 4.5195 -10.0655 -0.0221 40 1 5.8214 -8.0032 0.3093 41 1 4.6666 -5.8453 0.5713 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080216488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:32 Heat of formation + Delta-G solvation = -16.328033 kcal Electronic energy + Delta-G solvation = -19695.367870 eV Core-core repulsion = 16768.412205 eV Total energy + Delta-G solvation = -2926.955665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.03354 -38.86131 -38.20421 -34.54295 -34.11684 -31.98982 -31.42501 -30.37690 -27.79760 -27.21970 -25.25656 -23.75256 -23.03413 -22.12479 -21.18711 -19.28773 -18.24484 -17.34113 -17.06698 -16.81167 -16.62374 -16.32664 -15.41831 -15.33458 -14.85813 -14.58498 -14.37199 -14.29634 -14.07875 -13.88041 -13.40949 -13.33061 -12.94662 -12.80420 -12.63054 -12.46807 -12.40668 -12.07374 -12.04608 -11.91701 -11.70832 -11.55876 -11.38064 -11.24117 -10.52490 -9.94670 -9.15838 -8.73323 -8.22046 -5.43422 0.39944 0.50645 1.34100 1.44979 1.52310 2.20273 2.47201 2.85994 3.00642 3.42102 3.87856 3.95090 3.99208 4.13465 4.27396 4.28811 4.37895 4.42386 4.46322 4.51572 4.56676 4.66501 4.71297 4.76253 4.84901 4.95459 5.07370 5.09977 5.14948 5.18391 5.22851 5.36347 5.43366 5.49459 5.58050 5.60156 5.63694 5.90154 5.98398 6.27355 6.48004 7.06094 7.73211 8.15621 8.98513 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.004596 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.714500 B = 6091.170940 C = 6688.040357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.155 3.845 3 C -0.149 4.149 4 N -0.607 5.607 5 C -0.250 4.250 6 H 0.040 0.960 7 C -0.008 4.008 8 N -0.932 5.932 9 Si 0.904 3.096 10 H -0.300 1.300 11 H -0.300 1.300 12 H -0.237 1.237 13 C 0.152 3.848 14 C -0.121 4.121 15 C 0.069 3.931 16 O -0.335 6.335 17 C 0.104 3.896 18 C -0.174 4.174 19 C -0.081 4.081 20 C -0.164 4.164 21 C -0.086 4.086 22 C -0.225 4.225 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.650 -13.484 -13.436 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.050 3.950 3 C -0.208 4.208 4 N -0.330 5.330 5 C -0.380 4.380 6 H 0.058 0.942 7 C -0.206 4.206 8 N -0.575 5.575 9 Si 0.731 3.269 10 H -0.228 1.228 11 H -0.227 1.227 12 H -0.160 1.160 13 C 0.027 3.973 14 C -0.161 4.161 15 C -0.006 4.006 16 O -0.249 6.249 17 C 0.059 3.941 18 C -0.193 4.193 19 C -0.099 4.099 20 C -0.182 4.182 21 C -0.104 4.104 22 C -0.244 4.244 23 H 0.050 0.950 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.474 -13.429 -13.294 19.419 hybrid contribution 0.784 0.632 0.891 1.345 sum 5.258 -12.797 -12.403 18.581 Atomic orbital electron populations 1.22047 0.97153 1.00483 1.00717 1.20683 0.93388 0.92436 0.88474 1.22081 1.00082 0.97646 1.00981 1.44327 1.59538 1.27046 1.02061 1.18403 0.96010 1.37839 0.85720 0.94223 1.25918 1.01137 0.99002 0.94496 1.70183 1.36207 1.49390 1.01698 0.86407 0.83864 0.77055 0.79592 1.22787 1.22746 1.15965 1.21089 0.91898 0.85242 0.99109 1.22048 0.99312 0.92936 1.01852 1.22812 0.93748 0.82912 1.01169 1.86061 1.37399 1.14390 1.87065 1.19489 0.91998 0.86022 0.96617 1.20741 1.00732 0.90790 1.07012 1.21327 0.95107 0.96983 0.96498 1.21453 0.94164 0.99305 1.03253 1.21310 1.01163 0.91535 0.96365 1.21520 0.93084 1.00740 1.09066 0.95036 0.90828 0.94257 0.90433 0.94086 0.90824 0.94624 0.93064 0.94607 0.91715 0.91056 0.93944 0.92625 0.90180 0.85146 0.82661 0.83087 0.83558 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.03 71.98 0.65 -4.43 16 2 C 0.16 5.70 3.36 44.99 0.15 5.85 16 3 C -0.15 -5.20 9.22 71.98 0.66 -4.54 16 4 N -0.61 -27.27 2.02 -678.05 -1.37 -28.63 16 5 C -0.25 -13.73 8.50 84.03 0.71 -13.02 16 6 H 0.04 2.44 7.12 -2.91 -0.02 2.42 16 7 C -0.01 -0.45 4.98 84.86 0.42 -0.03 16 8 N -0.93 -57.71 13.97 21.65 0.30 -57.40 16 9 Si 0.90 43.98 26.29 68.60 1.80 45.79 16 10 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 11 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 12 H -0.24 -10.35 5.95 99.48 0.59 -9.75 16 13 C 0.15 6.13 3.85 86.38 0.33 6.46 16 14 C -0.12 -4.49 5.90 30.60 0.18 -4.31 16 15 C 0.07 2.18 4.74 71.99 0.34 2.52 16 16 O -0.33 -11.21 10.14 -92.45 -0.94 -12.15 16 17 C 0.10 3.03 6.69 22.51 0.15 3.18 16 18 C -0.17 -4.34 9.99 22.37 0.22 -4.12 16 19 C -0.08 -1.54 10.04 22.26 0.22 -1.32 16 20 C -0.16 -2.88 10.04 22.28 0.22 -2.65 16 21 C -0.09 -1.72 10.04 22.25 0.22 -1.49 16 22 C -0.23 -5.70 9.04 22.36 0.20 -5.50 16 23 H 0.03 1.23 7.25 -2.39 -0.02 1.22 16 24 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.08 2.44 7.88 -2.39 -0.02 2.42 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.03 1.42 7.58 -2.39 -0.02 1.41 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 31 H 0.04 1.59 4.57 -2.39 -0.01 1.57 16 32 H 0.06 2.22 8.05 -2.38 -0.02 2.21 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.78 7.66 -2.39 -0.02 1.76 16 36 H 0.08 2.12 7.66 -2.39 -0.02 2.10 16 37 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.13 3.11 6.30 -2.91 -0.02 3.09 16 Total: -1.00 -66.51 331.46 5.37 -61.14 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.87 Total: 14.66 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.70 Total: -23.40 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -1.06 Total: -86.04 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.94 Total: -12.15 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.80 Total: 45.79 kcal Total: -66.51 5.37 -61.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.808 kcal (2) G-P(sol) polarization free energy of solvation -66.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds