Wall clock time and date at job start Mon Mar 30 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 C 1.53001 * 109.46988 * 240.00387 * 2 1 3 5 5 N 1.46497 * 109.47164 * 182.91469 * 4 2 1 6 6 C 1.46500 * 120.00181 * 84.12325 * 5 4 2 7 7 C 1.53005 * 109.46835 * 94.88897 * 6 5 4 8 8 C 1.50699 * 109.47336 * 183.09407 * 7 6 5 9 9 H 1.08004 * 119.99501 * 0.02562 * 8 7 6 10 10 C 1.37873 * 119.99993 * 179.97438 * 8 7 6 11 11 N 1.31522 * 119.99785 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00234 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47313 * 89.99615 * 12 10 8 14 14 H 1.48499 * 109.46981 * 209.99780 * 12 10 8 15 15 H 1.48503 * 109.46872 * 329.99529 * 12 10 8 16 16 C 1.39668 * 120.00034 * 264.12692 * 5 4 2 17 17 C 1.38975 * 120.04325 * 359.72505 * 16 5 4 18 18 C 1.38119 * 120.03512 * 179.76455 * 17 16 5 19 19 C 1.38216 * 120.12438 * 0.51029 * 18 17 16 20 20 C 1.38776 * 120.09554 * 359.74214 * 19 18 17 21 21 O 1.35898 * 120.01580 * 179.97438 * 20 19 18 22 22 C 1.38611 * 119.96092 * 0.02562 * 20 19 18 23 23 H 1.08997 * 109.47395 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46892 * 299.99893 * 1 2 3 25 25 H 1.08993 * 109.47327 * 59.99571 * 1 2 3 26 26 H 1.09000 * 109.47170 * 120.00087 * 2 1 3 27 27 H 1.09006 * 109.47149 * 60.23494 * 3 2 1 28 28 H 1.08994 * 109.47524 * 180.22809 * 3 2 1 29 29 H 1.09002 * 109.47396 * 300.23648 * 3 2 1 30 30 H 1.09003 * 109.46516 * 302.91286 * 4 2 1 31 31 H 1.09000 * 109.47101 * 62.90883 * 4 2 1 32 32 H 1.09002 * 109.47618 * 214.88648 * 6 5 4 33 33 H 1.08994 * 109.47109 * 334.89394 * 6 5 4 34 34 H 1.09001 * 109.47305 * 303.09904 * 7 6 5 35 35 H 1.09004 * 109.47176 * 63.09615 * 7 6 5 36 36 H 0.96995 * 119.99701 * 179.97438 * 11 10 8 37 37 H 1.07999 * 119.98586 * 0.02562 * 17 16 5 38 38 H 1.07991 * 119.93844 * 180.22968 * 18 17 16 39 39 H 1.08002 * 119.95482 * 179.76232 * 19 18 17 40 40 H 0.96702 * 113.99759 * 270.01738 * 21 20 19 41 41 H 1.08003 * 120.06385 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5033 -0.7823 -1.2147 6 6 4.1744 -1.8521 -0.4723 7 6 4.5108 -3.0009 -1.4253 8 6 5.1324 -4.1326 -0.6484 9 1 5.2730 -4.0418 0.4186 10 6 5.5205 -5.2843 -1.2994 11 7 6.0625 -6.2723 -0.6212 12 14 5.2766 -5.4416 -3.1447 13 1 6.4817 -4.9339 -3.8484 14 1 5.0627 -6.8685 -3.4959 15 1 4.0914 -4.6474 -3.5567 16 6 4.2585 0.1794 -1.8896 17 6 3.6228 1.1914 -2.5989 18 6 4.3699 2.1452 -3.2622 19 6 5.7506 2.0898 -3.2312 20 6 6.3909 1.0785 -2.5289 21 8 7.7485 1.0253 -2.4999 22 6 5.6449 0.1222 -1.8579 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6801 1.9551 0.8921 28 1 3.1299 1.4425 -0.0041 29 1 1.6732 1.9576 -0.8879 30 1 1.6345 -1.7327 -1.2758 31 1 1.7198 -0.1780 -2.1385 32 1 5.0929 -1.4665 -0.0297 33 1 3.5157 -2.2155 0.3164 34 1 3.5988 -3.3503 -1.9095 35 1 5.2129 -2.6512 -2.1823 36 1 6.3353 -7.0826 -1.0792 37 1 2.5441 1.2346 -2.6280 38 1 3.8743 2.9330 -3.8098 39 1 6.3320 2.8348 -3.7540 40 1 8.1371 0.5044 -3.2160 41 1 6.1415 -0.6653 -1.3105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081047006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:42 Heat of formation + Delta-G solvation = -46.155456 kcal Electronic energy + Delta-G solvation = -20276.551293 eV Core-core repulsion = 17348.302214 eV Total energy + Delta-G solvation = -2928.249079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97646 -39.06573 -36.95771 -36.08704 -34.71937 -32.35898 -31.07277 -29.91712 -27.90981 -27.59089 -25.68978 -23.52394 -22.85100 -21.82304 -20.64244 -19.32309 -18.94997 -17.74569 -16.91004 -16.46275 -16.44379 -15.96580 -15.50865 -15.37063 -15.23039 -14.93901 -14.74685 -14.11282 -13.82712 -13.64712 -13.33674 -13.07374 -12.91890 -12.88685 -12.67413 -12.57456 -12.17255 -12.00979 -11.95207 -11.80068 -11.69065 -11.52261 -11.46041 -11.25830 -10.81830 -10.54706 -9.56896 -8.34461 -8.12068 -6.38610 0.46538 0.72336 1.30615 1.31597 1.43792 2.24194 2.30725 2.89435 3.01135 3.44788 3.88503 4.00515 4.03307 4.20777 4.27104 4.36726 4.43513 4.52928 4.56492 4.63617 4.74676 4.83581 4.84271 4.85175 4.93481 5.02667 5.07109 5.11041 5.22441 5.28060 5.32853 5.41062 5.47497 5.51084 5.56371 5.63491 5.69399 5.91798 6.18062 6.43159 6.67602 6.69613 6.91380 7.26454 8.82226 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.007246 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.336251 B = 3863.181406 C = 5297.564193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.136 4.136 4 C 0.122 3.878 5 N -0.623 5.623 6 C 0.149 3.851 7 C -0.013 4.013 8 C -0.531 4.531 9 H 0.037 0.963 10 C 0.011 3.989 11 N -0.946 5.946 12 Si 0.947 3.053 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.253 1.253 16 C 0.231 3.769 17 C -0.209 4.209 18 C -0.053 4.053 19 C -0.217 4.217 20 C 0.137 3.863 21 O -0.516 6.516 22 C -0.254 4.254 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.017 0.983 35 H 0.009 0.991 36 H 0.267 0.733 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.138 0.862 40 H 0.406 0.594 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 18.159 -6.408 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 C -0.193 4.193 4 C -0.001 4.001 5 N -0.330 5.330 6 C 0.026 3.974 7 C -0.052 4.052 8 C -0.569 4.569 9 H 0.055 0.945 10 C -0.186 4.186 11 N -0.587 5.587 12 Si 0.771 3.229 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.177 1.177 16 C 0.127 3.873 17 C -0.232 4.232 18 C -0.071 4.071 19 C -0.237 4.237 20 C 0.092 3.908 21 O -0.329 6.329 22 C -0.277 4.277 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.161 0.839 38 H 0.174 0.826 39 H 0.156 0.844 40 H 0.265 0.735 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.492 18.184 -5.818 21.321 hybrid contribution 0.732 -1.315 -0.534 1.597 sum -8.761 16.869 -6.351 20.041 Atomic orbital electron populations 1.21727 0.92982 1.02123 1.02780 1.21534 0.96974 0.96876 0.97831 1.21801 1.00162 0.95258 1.02110 1.21704 0.78380 1.00974 0.99014 1.46841 1.05190 1.27030 1.53972 1.21120 0.96397 0.86361 0.93557 1.19770 0.95816 0.93705 0.95888 1.21323 1.40166 1.00231 0.95214 0.94493 1.25898 0.94136 0.95204 1.03364 1.70053 1.43367 1.06926 1.38328 0.85701 0.79769 0.77547 0.79860 1.19493 1.20596 1.17664 1.17853 0.89863 0.88888 0.90683 1.20961 1.00794 0.97146 1.04262 1.21069 0.92695 0.97376 0.96009 1.21299 0.95649 1.01488 1.05264 1.18370 0.82581 0.94026 0.95779 1.84700 1.16619 1.75684 1.55904 1.21047 0.93509 1.03346 1.09789 0.92696 0.91868 0.91239 0.92950 0.92580 0.94573 0.91285 0.91611 0.88832 0.92900 0.91326 0.96495 0.97215 0.92382 0.83894 0.82567 0.84413 0.73525 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.19 71.98 0.66 -1.67 16 2 C -0.11 -2.49 3.14 -10.79 -0.03 -2.53 16 3 C -0.14 -2.87 7.81 71.98 0.56 -2.30 16 4 C 0.12 3.12 4.88 86.38 0.42 3.54 16 5 N -0.62 -20.35 2.32 -697.36 -1.62 -21.96 16 6 C 0.15 5.97 5.01 86.38 0.43 6.40 16 7 C -0.01 -0.63 4.28 29.85 0.13 -0.50 16 8 C -0.53 -30.71 9.66 25.60 0.25 -30.46 16 9 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 10 C 0.01 0.67 5.47 84.65 0.46 1.14 16 11 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 12 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 16 C 0.23 7.36 5.35 38.20 0.20 7.56 16 17 C -0.21 -5.21 7.71 22.42 0.17 -5.04 16 18 C -0.05 -1.16 10.03 22.24 0.22 -0.94 16 19 C -0.22 -5.43 9.98 22.39 0.22 -5.21 16 20 C 0.14 4.25 6.70 22.49 0.15 4.40 16 21 O -0.52 -15.05 13.50 -92.40 -1.25 -16.30 16 22 C -0.25 -8.99 8.81 22.49 0.20 -8.79 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.04 0.94 6.39 -2.39 -0.02 0.93 16 29 H 0.07 1.21 7.05 -2.39 -0.02 1.20 16 30 H 0.07 1.78 8.12 -2.39 -0.02 1.76 16 31 H 0.09 2.00 5.88 -2.39 -0.01 1.99 16 32 H 0.05 2.23 6.48 -2.39 -0.02 2.22 16 33 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 34 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 35 H 0.01 0.46 7.11 -2.39 -0.02 0.45 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.14 2.88 4.91 -2.91 -0.01 2.86 16 38 H 0.16 2.24 8.06 -2.92 -0.02 2.22 16 39 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.41 8.20 9.06 -74.06 -0.67 7.53 16 41 H 0.10 4.25 6.07 -2.91 -0.02 4.23 16 Total: -1.00 -69.12 325.47 3.66 -65.46 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.29 Total: 19.36 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 4.06 Total: -34.38 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -1.32 Total: -81.11 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -1.25 Total: -16.30 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -69.12 3.66 -65.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081047006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.306 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds