Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47482 * 2 1 4 4 C 1.53006 * 109.46968 * 239.99785 * 2 1 3 5 5 H 1.08995 * 109.47294 * 60.00422 * 4 2 1 6 6 C 1.52999 * 109.46927 * 180.02562 * 4 2 1 7 7 O 1.42896 * 109.47492 * 54.99766 * 6 4 2 8 8 N 1.46898 * 109.46887 * 300.00143 * 4 2 1 9 9 C 1.46901 * 110.99885 * 155.00403 * 8 4 2 10 10 H 1.08996 * 109.46821 * 331.21555 * 9 8 4 11 11 C 1.50700 * 109.47395 * 91.21933 * 9 8 4 12 12 H 1.07993 * 120.00047 * 54.47876 * 11 9 8 13 13 C 1.37879 * 119.99764 * 234.48476 * 11 9 8 14 14 N 1.31508 * 119.99827 * 178.18889 * 13 11 9 15 15 Si 1.86804 * 120.00008 * 358.18763 * 13 11 9 16 16 H 1.48505 * 109.46838 * 84.84858 * 15 13 11 17 17 H 1.48493 * 109.47247 * 204.84498 * 15 13 11 18 18 H 1.48501 * 109.47307 * 324.85019 * 15 13 11 19 19 C 1.50703 * 109.47048 * 211.21582 * 9 8 4 20 20 C 1.38231 * 119.99990 * 314.76379 * 19 9 8 21 21 C 1.38241 * 119.99887 * 179.78781 * 20 19 9 22 22 C 1.38236 * 119.99891 * 0.43811 * 21 20 19 23 23 C 1.38234 * 119.99864 * 359.81381 * 22 21 20 24 24 C 1.38231 * 120.00372 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.47429 * 300.00423 * 1 2 3 26 26 H 1.09001 * 109.47662 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47104 * 60.00158 * 1 2 3 28 28 H 1.09002 * 109.47104 * 119.99842 * 2 1 3 29 29 H 1.08994 * 109.47758 * 59.99893 * 3 2 1 30 30 H 1.09000 * 109.47247 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46614 * 299.99545 * 3 2 1 32 32 H 1.09005 * 109.47240 * 175.00142 * 6 4 2 33 33 H 1.09000 * 109.47211 * 294.99460 * 6 4 2 34 34 H 0.96708 * 114.00159 * 179.97438 * 7 6 4 35 35 H 1.00908 * 110.99926 * 278.95174 * 8 4 2 36 36 H 0.97003 * 119.99916 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.00103 * 359.97438 * 20 19 9 38 38 H 1.08000 * 119.99902 * 180.27461 * 21 20 19 39 39 H 1.07994 * 119.99913 * 179.83465 * 22 21 20 40 40 H 1.08008 * 119.99961 * 180.02562 * 23 22 21 41 41 H 1.08001 * 120.00258 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6767 -0.2075 -2.1392 6 6 3.5699 -0.7219 -1.2489 7 8 4.0458 -1.2915 -0.0279 8 7 1.5502 -2.1063 -1.2492 9 6 1.4874 -2.6425 -2.6154 10 1 1.3140 -1.8275 -3.3179 11 6 2.7898 -3.3240 -2.9479 12 1 3.1726 -4.1012 -2.3031 13 6 3.4926 -2.9551 -4.0753 14 7 4.6465 -3.5247 -4.3464 15 14 2.8057 -1.6463 -5.2176 16 1 3.1820 -0.3015 -4.7124 17 1 3.3632 -1.8369 -6.5806 18 1 1.3259 -1.7600 -5.2676 19 6 0.3604 -3.6382 -2.7129 20 6 0.1914 -4.5899 -1.7247 21 6 -0.8451 -5.5004 -1.8120 22 6 -1.7071 -5.4650 -2.8920 23 6 -1.5350 -4.5166 -3.8829 24 6 -0.5012 -3.6033 -3.7934 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8901 32 1 3.9332 -1.3114 -2.0908 33 1 3.9336 0.3017 -1.3384 34 1 5.0099 -1.3245 0.0413 35 1 2.1203 -2.6914 -0.6569 36 1 5.1412 -3.2649 -5.1394 37 1 0.8673 -4.6202 -0.8829 38 1 -0.9798 -6.2412 -1.0376 39 1 -2.5152 -6.1780 -2.9615 40 1 -2.2088 -4.4886 -4.7265 41 1 -0.3665 -2.8626 -4.5678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092394735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = -56.840610 kcal Electronic energy + Delta-G solvation = -20855.064326 eV Core-core repulsion = 17926.351904 eV Total energy + Delta-G solvation = -2928.712422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.26640 -39.18055 -36.49538 -35.73872 -33.98915 -31.83101 -31.52514 -29.09760 -28.41471 -27.12823 -24.39654 -23.65323 -23.04616 -21.38474 -20.73363 -19.07382 -18.10995 -17.57769 -16.78636 -16.34258 -15.92201 -15.74548 -15.62348 -15.28280 -14.86430 -14.58332 -14.14598 -13.92581 -13.66489 -13.59449 -13.44973 -13.14706 -12.96490 -12.91277 -12.80838 -12.41830 -12.15916 -11.90459 -11.80612 -11.61767 -11.44544 -11.34631 -11.24720 -10.93174 -10.52513 -9.61621 -9.36712 -8.93370 -8.35113 -6.35884 0.70277 0.77493 1.22507 1.27683 1.34376 2.24073 2.95280 3.20732 3.38944 3.77801 3.95852 4.14907 4.20721 4.30268 4.37758 4.42411 4.43373 4.59054 4.61014 4.66441 4.79456 4.83891 4.92704 4.94865 4.97123 5.09532 5.17506 5.21476 5.31035 5.37765 5.42492 5.47598 5.61346 5.67786 5.77198 5.82858 6.01910 6.10877 6.35224 6.51443 6.67596 6.82050 6.93188 7.27854 8.80806 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013831 B = 0.009394 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.985752 B = 2979.853806 C = 4055.323818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 C -0.142 4.142 4 C 0.100 3.900 5 H 0.062 0.938 6 C 0.046 3.954 7 O -0.572 6.572 8 N -0.664 5.664 9 C 0.213 3.787 10 H 0.039 0.961 11 C -0.510 4.510 12 H 0.035 0.965 13 C 0.032 3.968 14 N -0.937 5.937 15 Si 0.912 3.088 16 H -0.260 1.260 17 H -0.289 1.289 18 H -0.246 1.246 19 C -0.045 4.045 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.143 4.143 23 C -0.123 4.123 24 C -0.157 4.157 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.385 0.615 35 H 0.338 0.662 36 H 0.265 0.735 37 H 0.106 0.894 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 5.805 5.452 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.200 4.200 4 C -0.010 4.010 5 H 0.080 0.920 6 C -0.033 4.033 7 O -0.379 6.379 8 N -0.293 5.293 9 C 0.104 3.896 10 H 0.057 0.943 11 C -0.549 4.549 12 H 0.053 0.947 13 C -0.168 4.168 14 N -0.577 5.577 15 Si 0.737 3.263 16 H -0.185 1.185 17 H -0.215 1.215 18 H -0.170 1.170 19 C -0.046 4.046 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.161 4.161 23 C -0.140 4.140 24 C -0.176 4.176 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.233 0.767 35 H 0.156 0.844 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.990 5.940 5.457 12.840 hybrid contribution 2.151 0.194 -1.314 2.528 sum -7.839 6.134 4.144 10.782 Atomic orbital electron populations 1.21635 0.94624 1.01725 1.00725 1.20906 0.96114 0.95403 0.96848 1.21838 1.00816 0.95246 1.02067 1.21678 0.90230 0.90843 0.98279 0.91975 1.22931 0.97182 0.96323 0.86843 1.86326 1.27380 1.85421 1.38736 1.60927 1.55472 1.02291 1.10560 1.18552 0.90639 0.91945 0.88497 0.94282 1.21537 1.03888 1.20460 1.09016 0.94666 1.25692 0.94630 0.97968 0.98466 1.70027 1.15313 1.44471 1.27851 0.86301 0.80413 0.80712 0.78877 1.18494 1.21543 1.17043 1.20302 0.93933 0.96623 0.93782 1.20904 0.98403 0.95633 0.98726 1.21382 0.95135 0.98739 0.99094 1.21298 1.00596 0.99672 0.94531 1.21292 0.97690 0.95337 0.99730 1.21154 0.96934 1.01106 0.98363 0.92151 0.92939 0.93793 0.91677 0.91277 0.93019 0.92868 0.94492 0.93460 0.76701 0.84413 0.92603 0.87565 0.84418 0.83615 0.84291 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.04 71.98 0.65 -3.03 16 2 C -0.07 -2.23 2.49 -10.80 -0.03 -2.25 16 3 C -0.14 -3.56 8.84 71.98 0.64 -2.92 16 4 C 0.10 3.68 1.99 44.92 0.09 3.77 16 5 H 0.06 2.36 7.38 -2.39 -0.02 2.35 16 6 C 0.05 1.74 6.08 71.98 0.44 2.17 16 7 O -0.57 -19.95 12.14 -148.98 -1.81 -21.76 16 8 N -0.66 -26.94 4.78 -477.18 -2.28 -29.22 16 9 C 0.21 9.67 2.14 43.42 0.09 9.76 16 10 H 0.04 1.82 3.69 -2.39 -0.01 1.81 16 11 C -0.51 -27.37 7.19 25.60 0.18 -27.19 16 12 H 0.04 2.15 8.06 -2.91 -0.02 2.13 16 13 C 0.03 1.75 4.74 84.66 0.40 2.15 16 14 N -0.94 -55.91 13.96 21.45 0.30 -55.61 16 15 Si 0.91 42.16 27.02 68.60 1.85 44.01 16 16 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.25 -10.73 5.69 99.48 0.57 -10.16 16 19 C -0.05 -1.95 4.93 -19.86 -0.10 -2.05 16 20 C -0.12 -4.68 9.28 22.27 0.21 -4.47 16 21 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 22 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 23 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 24 C -0.16 -6.22 9.67 22.27 0.22 -6.00 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.67 7.60 -2.39 -0.02 1.65 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 2.12 7.56 -2.39 -0.02 2.10 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.31 6.54 -2.39 -0.02 1.29 16 31 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.04 1.69 5.80 -2.38 -0.01 1.67 16 33 H 0.05 1.56 6.71 -2.39 -0.02 1.54 16 34 H 0.39 10.61 9.12 -74.05 -0.68 9.93 16 35 H 0.34 14.70 7.31 -89.69 -0.66 14.05 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.11 4.27 7.65 -2.91 -0.02 4.25 16 38 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.10 4.13 7.01 -2.91 -0.02 4.11 16 Total: -1.00 -62.16 323.81 1.08 -61.08 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.44 Total: 43.23 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 3.46 Total: -41.74 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -1.98 Total: -84.83 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.81 Total: -21.76 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.85 Total: 44.01 kcal Total: -62.16 1.08 -61.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092394735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.238 kcal (2) G-P(sol) polarization free energy of solvation -62.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds