Wall clock time and date at job start Mon Mar 30 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 C 1.53008 * 109.46859 * 119.99881 * 2 1 3 5 5 H 1.09002 * 109.46663 * 299.99911 * 4 2 1 6 6 C 1.53002 * 109.46859 * 179.97438 * 4 2 1 7 7 O 1.42891 * 109.47134 * 304.99784 * 6 4 2 8 8 N 1.46903 * 109.47097 * 59.99909 * 4 2 1 9 9 C 1.46898 * 110.99643 * 204.99810 * 8 4 2 10 10 H 1.08998 * 109.47455 * 324.50570 * 9 8 4 11 11 C 1.50702 * 109.47010 * 84.50346 * 9 8 4 12 12 H 1.08000 * 119.99935 * 60.18066 * 11 9 8 13 13 C 1.37881 * 120.00035 * 240.18475 * 11 9 8 14 14 N 1.31510 * 120.00041 * 174.82851 * 13 11 9 15 15 Si 1.86794 * 119.99773 * 354.82871 * 13 11 9 16 16 H 1.48508 * 109.46986 * 84.75120 * 15 13 11 17 17 H 1.48501 * 109.47255 * 204.74946 * 15 13 11 18 18 H 1.48496 * 109.47412 * 324.75079 * 15 13 11 19 19 C 1.50706 * 109.46768 * 204.50019 * 9 8 4 20 20 C 1.38238 * 119.99499 * 133.71440 * 19 9 8 21 21 C 1.38238 * 119.99507 * 179.97438 * 20 19 9 22 22 C 1.38235 * 119.99991 * 0.02562 * 21 20 19 23 23 C 1.38233 * 119.99894 * 359.97096 * 22 21 20 24 24 C 1.38227 * 120.00138 * 313.62084 * 19 9 8 25 25 H 1.08999 * 109.46894 * 59.99969 * 1 2 3 26 26 H 1.08999 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47425 * 300.00140 * 1 2 3 28 28 H 1.09002 * 109.47410 * 239.99335 * 2 1 3 29 29 H 1.08998 * 109.46585 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46857 * 299.99678 * 3 2 1 31 31 H 1.08998 * 109.47059 * 59.99636 * 3 2 1 32 32 H 1.09002 * 109.46662 * 65.00088 * 6 4 2 33 33 H 1.08999 * 109.46551 * 184.99863 * 6 4 2 34 34 H 0.96695 * 114.00396 * 180.02562 * 7 6 4 35 35 H 1.00902 * 110.99899 * 328.95507 * 8 4 2 36 36 H 0.97001 * 120.00240 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.00194 * 0.25385 * 20 19 9 38 38 H 1.08001 * 119.99345 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.99654 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.99722 * 179.97438 * 23 22 21 41 41 H 1.08006 * 120.00410 * 0.08978 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5700 -0.7218 1.2490 7 8 4.0459 -1.2916 0.0281 8 7 1.5503 -2.1063 1.2494 9 6 1.4875 -2.6423 2.6156 10 1 2.3174 -2.2454 3.2002 11 6 0.1840 -2.2376 3.2546 12 1 -0.7523 -2.5451 2.8129 13 6 0.1869 -1.4746 4.4030 14 7 -0.9472 -1.0358 4.9038 15 14 1.8017 -1.0641 5.2475 16 1 2.4014 0.1368 4.6121 17 1 1.5527 -0.7909 6.6858 18 1 2.7349 -2.2117 5.1160 19 6 1.5790 -4.1459 2.5699 20 6 2.4275 -4.8132 3.4334 21 6 2.5110 -6.1925 3.3918 22 6 1.7464 -6.9042 2.4864 23 6 0.8979 -6.2368 1.6230 24 6 0.8130 -4.8578 1.6658 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.9337 0.3018 1.3384 33 1 3.9332 -1.3113 2.0909 34 1 5.0098 -1.3246 -0.0412 35 1 0.6526 -2.1724 0.7933 36 1 -0.9452 -0.4987 5.7116 37 1 3.0217 -4.2574 4.1435 38 1 3.1742 -6.7138 4.0662 39 1 1.8120 -7.9817 2.4537 40 1 0.3009 -6.7929 0.9153 41 1 0.1500 -4.3364 0.9912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092394737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:43 Heat of formation + Delta-G solvation = -35.324890 kcal Electronic energy + Delta-G solvation = -20830.269650 eV Core-core repulsion = 17902.490220 eV Total energy + Delta-G solvation = -2927.779430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.76546 -37.78122 -35.29568 -34.07283 -32.03425 -30.28958 -30.08337 -27.95220 -26.92770 -25.55018 -23.03903 -22.04610 -21.62695 -19.62841 -19.13181 -17.24418 -16.83928 -16.20686 -15.28239 -14.90237 -14.53731 -14.36965 -14.11282 -13.40697 -13.21978 -12.80931 -12.69320 -12.59853 -12.51382 -12.19818 -11.98771 -11.80515 -11.65580 -11.32173 -11.15605 -11.02083 -10.54703 -10.52107 -10.25209 -10.05008 -9.92712 -9.77934 -9.48592 -9.32591 -8.75343 -8.17327 -7.88622 -7.22838 -6.26546 -4.27469 2.15859 2.22907 3.11460 3.21077 3.22678 4.22557 4.58049 4.78925 5.05359 5.18150 5.27986 5.38878 5.53879 5.56772 5.60230 5.73161 5.79207 5.90760 5.93482 6.06004 6.14927 6.24021 6.26619 6.29715 6.37781 6.41080 6.44628 6.52473 6.56597 6.78255 6.78552 6.89886 6.96954 7.18591 7.28060 7.41833 7.58065 7.81045 7.99287 8.12146 8.30405 8.56082 8.79355 9.35822 10.86036 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.009016 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.646888 B = 3104.835379 C = 3943.716339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.144 4.144 4 C 0.097 3.903 5 H 0.060 0.940 6 C 0.087 3.913 7 O -0.553 6.553 8 N -0.673 5.673 9 C 0.203 3.797 10 H 0.048 0.952 11 C -0.532 4.532 12 H 0.078 0.922 13 C 0.081 3.919 14 N -0.887 5.887 15 Si 0.866 3.134 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.263 1.263 19 C -0.012 4.012 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.151 4.151 23 C -0.125 4.125 24 C -0.102 4.102 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.361 0.639 35 H 0.336 0.664 36 H 0.266 0.734 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -0.871 -6.797 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.014 4.014 5 H 0.078 0.922 6 C 0.008 3.992 7 O -0.356 6.356 8 N -0.305 5.305 9 C 0.095 3.905 10 H 0.066 0.934 11 C -0.571 4.571 12 H 0.096 0.904 13 C -0.124 4.124 14 N -0.524 5.524 15 Si 0.693 3.307 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.188 1.188 19 C -0.013 4.013 20 C -0.153 4.153 21 C -0.142 4.142 22 C -0.169 4.169 23 C -0.143 4.143 24 C -0.121 4.121 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.206 0.794 35 H 0.157 0.843 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.596 -1.078 -6.885 10.308 hybrid contribution 0.542 0.757 1.363 1.651 sum 8.138 -0.321 -5.521 9.839 Atomic orbital electron populations 1.21856 0.95336 1.02079 1.01209 1.21088 0.95393 0.95250 0.99034 1.21845 1.00675 0.96500 1.01158 1.21402 0.91792 0.90868 0.97314 0.92179 1.22307 0.95735 0.94922 0.86222 1.86603 1.24703 1.85220 1.39047 1.61046 1.33016 1.17116 1.19308 1.18693 0.96807 0.87487 0.87529 0.93442 1.21530 0.92432 1.32281 1.10818 0.90399 1.25080 0.95886 0.94868 0.96535 1.69888 1.25684 1.34931 1.21857 0.87067 0.84904 0.79310 0.79420 1.19852 1.21194 1.18788 1.20252 0.91677 0.97293 0.92124 1.20982 1.00161 0.94081 1.00082 1.20918 0.99945 0.94218 0.99080 1.20825 0.99241 0.98691 0.98185 1.21011 0.99242 0.94749 0.99325 1.20815 0.99284 0.93134 0.98839 0.93526 0.92199 0.92344 0.90185 0.92911 0.93169 0.93049 0.94568 0.94545 0.79428 0.84326 0.92403 0.87326 0.87391 0.87471 0.87291 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.96 37.16 0.33 -2.09 16 2 C -0.09 -1.46 2.45 -90.61 -0.22 -1.68 16 3 C -0.14 -2.06 8.84 37.16 0.33 -1.73 16 4 C 0.10 1.84 1.83 -67.71 -0.12 1.71 16 5 H 0.06 1.31 7.26 -51.93 -0.38 0.93 16 6 C 0.09 1.47 6.28 37.16 0.23 1.70 16 7 O -0.55 -8.76 12.73 -35.23 -0.45 -9.20 16 8 N -0.67 -13.78 5.61 -102.17 -0.57 -14.36 16 9 C 0.20 4.62 1.95 -70.01 -0.14 4.48 16 10 H 0.05 1.12 3.45 -51.93 -0.18 0.94 16 11 C -0.53 -13.98 8.46 -34.44 -0.29 -14.27 16 12 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 14 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 15 Si 0.87 20.53 26.66 -169.99 -4.53 16.00 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.26 -6.00 6.26 56.52 0.35 -5.65 16 19 C -0.01 -0.27 4.93 -104.62 -0.52 -0.79 16 20 C -0.13 -2.75 9.67 -39.58 -0.38 -3.14 16 21 C -0.12 -2.19 10.05 -39.58 -0.40 -2.59 16 22 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 23 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 24 C -0.10 -2.06 9.26 -39.59 -0.37 -2.42 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.03 6.21 -51.93 -0.32 0.70 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.36 7.56 -51.93 -0.39 0.97 16 29 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.54 6.71 -51.93 -0.35 0.19 16 33 H 0.04 0.65 7.37 -51.93 -0.38 0.27 16 34 H 0.36 4.00 9.12 45.56 0.42 4.41 16 35 H 0.34 6.89 5.35 -39.29 -0.21 6.68 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 37 H 0.11 2.19 7.55 -52.49 -0.40 1.79 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.11 2.22 7.46 -52.48 -0.39 1.83 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -29.30 325.35 -7.80 -37.10 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -5.49 Total: 14.85 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -2.44 Total: -24.26 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.20 Total: -39.39 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.45 Total: -9.20 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.53 Total: 16.00 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.30 -7.80 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092394737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.778 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds