Wall clock time and date at job start Mon Mar 30 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 C 1.53008 * 109.46859 * 119.99881 * 2 1 3 5 5 H 1.09002 * 109.46663 * 299.99911 * 4 2 1 6 6 C 1.53002 * 109.46859 * 179.97438 * 4 2 1 7 7 O 1.42891 * 109.47134 * 304.99784 * 6 4 2 8 8 N 1.46903 * 109.47097 * 59.99909 * 4 2 1 9 9 C 1.46898 * 110.99643 * 204.99810 * 8 4 2 10 10 H 1.08998 * 109.47455 * 324.50570 * 9 8 4 11 11 C 1.50702 * 109.47010 * 84.50346 * 9 8 4 12 12 H 1.08000 * 119.99935 * 60.18066 * 11 9 8 13 13 C 1.37881 * 120.00035 * 240.18475 * 11 9 8 14 14 N 1.31510 * 120.00041 * 174.82851 * 13 11 9 15 15 Si 1.86794 * 119.99773 * 354.82871 * 13 11 9 16 16 H 1.48508 * 109.46986 * 84.75120 * 15 13 11 17 17 H 1.48501 * 109.47255 * 204.74946 * 15 13 11 18 18 H 1.48496 * 109.47412 * 324.75079 * 15 13 11 19 19 C 1.50706 * 109.46768 * 204.50019 * 9 8 4 20 20 C 1.38238 * 119.99499 * 133.71440 * 19 9 8 21 21 C 1.38238 * 119.99507 * 179.97438 * 20 19 9 22 22 C 1.38235 * 119.99991 * 0.02562 * 21 20 19 23 23 C 1.38233 * 119.99894 * 359.97096 * 22 21 20 24 24 C 1.38227 * 120.00138 * 313.62084 * 19 9 8 25 25 H 1.08999 * 109.46894 * 59.99969 * 1 2 3 26 26 H 1.08999 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47425 * 300.00140 * 1 2 3 28 28 H 1.09002 * 109.47410 * 239.99335 * 2 1 3 29 29 H 1.08998 * 109.46585 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.46857 * 299.99678 * 3 2 1 31 31 H 1.08998 * 109.47059 * 59.99636 * 3 2 1 32 32 H 1.09002 * 109.46662 * 65.00088 * 6 4 2 33 33 H 1.08999 * 109.46551 * 184.99863 * 6 4 2 34 34 H 0.96695 * 114.00396 * 180.02562 * 7 6 4 35 35 H 1.00902 * 110.99899 * 328.95507 * 8 4 2 36 36 H 0.97001 * 120.00240 * 180.02562 * 14 13 11 37 37 H 1.08000 * 120.00194 * 0.25385 * 20 19 9 38 38 H 1.08001 * 119.99345 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.99654 * 179.97438 * 22 21 20 40 40 H 1.08006 * 119.99722 * 179.97438 * 23 22 21 41 41 H 1.08006 * 120.00410 * 0.08978 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5700 -0.7218 1.2490 7 8 4.0459 -1.2916 0.0281 8 7 1.5503 -2.1063 1.2494 9 6 1.4875 -2.6423 2.6156 10 1 2.3174 -2.2454 3.2002 11 6 0.1840 -2.2376 3.2546 12 1 -0.7523 -2.5451 2.8129 13 6 0.1869 -1.4746 4.4030 14 7 -0.9472 -1.0358 4.9038 15 14 1.8017 -1.0641 5.2475 16 1 2.4014 0.1368 4.6121 17 1 1.5527 -0.7909 6.6858 18 1 2.7349 -2.2117 5.1160 19 6 1.5790 -4.1459 2.5699 20 6 2.4275 -4.8132 3.4334 21 6 2.5110 -6.1925 3.3918 22 6 1.7464 -6.9042 2.4864 23 6 0.8979 -6.2368 1.6230 24 6 0.8130 -4.8578 1.6658 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.9337 0.3018 1.3384 33 1 3.9332 -1.3113 2.0909 34 1 5.0098 -1.3246 -0.0412 35 1 0.6526 -2.1724 0.7933 36 1 -0.9452 -0.4987 5.7116 37 1 3.0217 -4.2574 4.1435 38 1 3.1742 -6.7138 4.0662 39 1 1.8120 -7.9817 2.4537 40 1 0.3009 -6.7929 0.9153 41 1 0.1500 -4.3364 0.9912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092394737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:43 Heat of formation + Delta-G solvation = -55.576193 kcal Electronic energy + Delta-G solvation = -20831.147812 eV Core-core repulsion = 17902.490220 eV Total energy + Delta-G solvation = -2928.657593 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28740 -39.18315 -36.69259 -35.64914 -33.99361 -31.76041 -31.53414 -29.40483 -28.53626 -27.08676 -24.70935 -23.49583 -23.06416 -21.26560 -20.57242 -19.23386 -18.12744 -17.67396 -16.84902 -16.67639 -15.98660 -15.72173 -15.64971 -14.96997 -14.76867 -14.51564 -14.24919 -14.04598 -13.93966 -13.67048 -13.49494 -13.31942 -13.00126 -12.86640 -12.83572 -12.59870 -12.10399 -11.94965 -11.84062 -11.66092 -11.50718 -11.32312 -11.11334 -10.80965 -10.68981 -9.63656 -9.41599 -8.93566 -8.38236 -6.41725 0.68426 0.75509 1.21153 1.25323 1.33101 2.22537 2.93292 3.17852 3.49866 3.64827 3.93247 4.04448 4.15739 4.21606 4.28529 4.38141 4.45936 4.49131 4.59232 4.63933 4.71675 4.83080 4.83399 4.91635 4.94468 5.00608 5.04507 5.09240 5.25864 5.30263 5.38367 5.43576 5.47655 5.59017 5.75094 5.80638 5.98953 6.10085 6.33161 6.48498 6.64915 6.80928 7.06938 7.25198 8.78039 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.009016 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.646888 B = 3104.835379 C = 3943.716339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.139 4.139 4 C 0.088 3.912 5 H 0.028 0.972 6 C 0.094 3.906 7 O -0.563 6.563 8 N -0.665 5.665 9 C 0.213 3.787 10 H 0.041 0.959 11 C -0.524 4.524 12 H 0.036 0.964 13 C 0.029 3.971 14 N -0.936 5.936 15 Si 0.918 3.082 16 H -0.259 1.259 17 H -0.286 1.286 18 H -0.249 1.249 19 C -0.046 4.046 20 C -0.156 4.156 21 C -0.121 4.121 22 C -0.143 4.143 23 C -0.124 4.124 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.385 0.615 35 H 0.332 0.668 36 H 0.266 0.734 37 H 0.105 0.895 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.041 -2.050 -7.794 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.197 4.197 4 C -0.022 4.022 5 H 0.045 0.955 6 C 0.015 3.985 7 O -0.369 6.369 8 N -0.296 5.296 9 C 0.104 3.896 10 H 0.059 0.941 11 C -0.563 4.563 12 H 0.054 0.946 13 C -0.171 4.171 14 N -0.576 5.576 15 Si 0.743 3.257 16 H -0.184 1.184 17 H -0.212 1.212 18 H -0.173 1.173 19 C -0.047 4.047 20 C -0.174 4.174 21 C -0.139 4.139 22 C -0.160 4.160 23 C -0.142 4.142 24 C -0.140 4.140 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.233 0.767 35 H 0.152 0.848 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.939 -2.264 -7.906 12.900 hybrid contribution -0.215 1.004 1.559 1.867 sum 9.724 -1.261 -6.347 11.681 Atomic orbital electron populations 1.21817 0.95855 1.01134 1.01276 1.21043 0.94889 0.96578 0.97564 1.21810 1.01412 0.94677 1.01797 1.21538 0.93686 0.89771 0.97227 0.95459 1.22122 0.93940 0.96167 0.86284 1.86536 1.27071 1.85193 1.38112 1.61093 1.32564 1.18268 1.17678 1.18497 0.94175 0.88876 0.88011 0.94107 1.21656 0.92683 1.31478 1.10461 0.94584 1.25804 0.98983 0.94990 0.97333 1.70029 1.28008 1.36757 1.22766 0.86195 0.81336 0.80036 0.78135 1.18363 1.21250 1.17293 1.20264 0.93800 0.96576 0.94079 1.21127 1.00519 0.95680 1.00092 1.21306 1.00049 0.93119 0.99421 1.21315 0.97467 1.00714 0.96548 1.21381 0.99323 0.93707 0.99818 1.20904 0.99483 0.94659 0.98986 0.90798 0.93690 0.94792 0.90062 0.91685 0.91085 0.93884 0.92107 0.95863 0.76745 0.84845 0.92487 0.87735 0.84106 0.83448 0.84295 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 8.96 71.98 0.64 -4.16 16 2 C -0.08 -2.65 2.45 -10.79 -0.03 -2.67 16 3 C -0.14 -3.72 8.84 71.98 0.64 -3.08 16 4 C 0.09 3.37 1.83 44.92 0.08 3.45 16 5 H 0.03 1.23 7.26 -2.39 -0.02 1.21 16 6 C 0.09 3.04 6.28 71.98 0.45 3.49 16 7 O -0.56 -16.60 12.73 -148.98 -1.90 -18.50 16 8 N -0.66 -27.93 5.61 -477.15 -2.67 -30.61 16 9 C 0.21 9.97 1.95 43.43 0.08 10.06 16 10 H 0.04 1.95 3.45 -2.39 -0.01 1.94 16 11 C -0.52 -28.97 8.46 25.60 0.22 -28.76 16 12 H 0.04 2.24 8.06 -2.91 -0.02 2.21 16 13 C 0.03 1.62 5.47 84.66 0.46 2.08 16 14 N -0.94 -57.12 13.96 21.45 0.30 -56.82 16 15 Si 0.92 43.17 26.66 68.60 1.83 45.00 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 18 H -0.25 -11.02 6.26 99.48 0.62 -10.40 16 19 C -0.05 -2.03 4.93 -19.87 -0.10 -2.13 16 20 C -0.16 -6.22 9.67 22.27 0.22 -6.01 16 21 C -0.12 -3.94 10.05 22.27 0.22 -3.71 16 22 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 23 C -0.12 -4.10 10.05 22.27 0.22 -3.88 16 24 C -0.12 -4.91 9.26 22.26 0.21 -4.70 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.04 1.61 6.21 -2.39 -0.01 1.59 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 2.64 7.56 -2.39 -0.02 2.62 16 29 H 0.06 1.57 6.54 -2.39 -0.02 1.56 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.68 6.71 -2.39 -0.02 1.66 16 33 H 0.02 0.81 7.37 -2.39 -0.02 0.79 16 34 H 0.38 7.41 9.12 -74.06 -0.68 6.74 16 35 H 0.33 14.27 5.35 -89.69 -0.48 13.79 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 37 H 0.10 4.15 7.55 -2.91 -0.02 4.13 16 38 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 40 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 41 H 0.11 4.27 7.46 -2.91 -0.02 4.25 16 Total: -1.00 -66.20 325.35 0.89 -65.30 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.21 Total: 39.68 kcal Atomic # 6 Polarization: -47.61 SS G_CDS: 3.55 Total: -44.06 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -2.38 Total: -87.43 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.90 Total: -18.50 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.83 Total: 45.00 kcal Total: -66.20 0.89 -65.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092394737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.728 kcal (2) G-P(sol) polarization free energy of solvation -66.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds