Wall clock time and date at job start Mon Mar 30 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46910 * 110.99522 * 2 1 4 4 C 1.52999 * 109.47174 * 286.92614 * 3 2 1 5 5 C 1.53002 * 109.47030 * 186.49085 * 4 3 2 6 6 C 1.53001 * 109.47123 * 306.49328 * 4 3 2 7 7 O 1.42905 * 109.46719 * 66.49128 * 4 3 2 8 8 C 1.46895 * 111.00387 * 123.95385 * 2 1 3 9 9 H 1.09000 * 109.47059 * 296.05014 * 8 2 1 10 10 C 1.50693 * 109.47385 * 176.04661 * 8 2 1 11 11 H 1.08004 * 120.00208 * 324.84516 * 10 8 2 12 12 C 1.37875 * 120.00087 * 144.84021 * 10 8 2 13 13 N 1.31509 * 120.00400 * 0.09929 * 12 10 8 14 14 Si 1.86803 * 119.99949 * 180.08691 * 12 10 8 15 15 H 1.48504 * 109.47054 * 180.02562 * 14 12 10 16 16 H 1.48496 * 109.47475 * 300.00611 * 14 12 10 17 17 H 1.48497 * 109.46837 * 60.00821 * 14 12 10 18 18 C 1.50703 * 109.47171 * 56.04539 * 8 2 1 19 19 C 1.38231 * 119.99544 * 46.89452 * 18 8 2 20 20 C 1.38235 * 119.99895 * 179.79171 * 19 18 8 21 21 C 1.38239 * 120.00038 * 0.43814 * 20 19 18 22 22 C 1.38239 * 119.99747 * 359.81619 * 21 20 19 23 23 C 1.38232 * 119.99974 * 227.17317 * 18 8 2 24 24 H 1.09003 * 109.46681 * 307.52401 * 1 2 3 25 25 H 1.08996 * 109.47658 * 67.52036 * 1 2 3 26 26 H 1.08996 * 109.46907 * 187.52940 * 1 2 3 27 27 H 1.08999 * 109.47394 * 46.93189 * 3 2 1 28 28 H 1.08998 * 109.46438 * 166.92834 * 3 2 1 29 29 H 1.08996 * 109.47109 * 60.00151 * 5 4 3 30 30 H 1.09000 * 109.47033 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.46961 * 300.00267 * 5 4 3 32 32 H 1.08997 * 109.47519 * 60.00190 * 6 4 3 33 33 H 1.09008 * 109.46627 * 180.02562 * 6 4 3 34 34 H 1.08996 * 109.47059 * 299.99315 * 6 4 3 35 35 H 0.96697 * 114.00193 * 60.00220 * 7 4 3 36 36 H 0.97004 * 119.99305 * 354.30424 * 13 12 10 37 37 H 1.08006 * 120.00446 * 0.02562 * 19 18 8 38 38 H 1.08004 * 120.00684 * 180.27670 * 20 19 18 39 39 H 1.08000 * 120.00263 * 179.83567 * 21 20 19 40 40 H 1.08003 * 120.00193 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.00525 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.7860 1.9982 -1.3800 5 6 2.4759 3.3629 -1.4304 6 6 2.3845 1.0843 -2.4512 7 8 0.3871 2.1624 -1.6212 8 6 1.9955 -0.7659 1.1375 9 1 1.7044 -0.2799 2.0687 10 6 3.4988 -0.8254 1.0504 11 1 3.9819 -0.8875 0.0865 12 6 4.2575 -0.8004 2.2014 13 7 3.6694 -0.7266 3.3753 14 14 6.1211 -0.8716 2.0933 15 1 6.6982 -0.8309 3.4610 16 1 6.5302 -2.1309 1.4211 17 1 6.6163 0.2900 1.3119 18 6 1.4347 -2.1643 1.1042 19 6 1.4358 -2.8814 -0.0776 20 6 0.9253 -4.1657 -0.1072 21 6 0.4056 -4.7296 1.0429 22 6 0.3998 -4.0106 2.2235 23 6 0.9141 -2.7278 2.2541 24 1 -0.3633 0.6260 0.8151 25 1 -0.3634 0.3929 -0.9495 26 1 -0.3633 -1.0188 0.1347 27 1 1.4704 1.9622 0.7507 28 1 3.0601 1.3520 0.2324 29 1 3.5429 3.2377 -1.2463 30 1 2.3264 3.8095 -2.4134 31 1 2.0496 4.0139 -0.6672 32 1 1.8930 0.1120 -2.4154 33 1 2.2357 1.5310 -3.4343 34 1 3.4515 0.9591 -2.2672 35 1 -0.0587 2.7313 -0.9789 36 1 2.7083 -0.6066 3.4295 37 1 1.8388 -2.4396 -0.9770 38 1 0.9301 -4.7276 -1.0295 39 1 0.0043 -5.7320 1.0192 40 1 -0.0067 -4.4509 3.1221 41 1 0.9096 -2.1661 3.1765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092966441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:47 Heat of formation + Delta-G solvation = -27.103176 kcal Electronic energy + Delta-G solvation = -20992.541111 eV Core-core repulsion = 18065.118201 eV Total energy + Delta-G solvation = -2927.422910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99891 -38.03526 -35.58388 -32.85046 -31.95683 -30.27511 -30.04787 -27.02925 -26.84585 -25.94119 -23.56146 -22.09678 -21.56377 -19.88391 -19.69884 -16.97363 -16.15557 -15.91896 -15.10798 -14.84909 -14.51991 -14.03435 -13.84043 -13.70306 -13.38479 -12.79388 -12.57725 -12.46085 -12.25009 -11.99276 -11.72421 -11.66646 -11.55506 -11.44811 -11.04315 -10.86329 -10.66066 -10.62012 -10.33201 -10.24078 -10.20698 -10.00590 -9.23642 -8.90901 -8.55404 -8.10877 -7.67172 -7.27463 -6.44707 -4.17754 2.21811 2.26308 3.37354 3.40200 3.57848 4.41808 4.53736 4.65263 4.93437 5.25437 5.31056 5.41345 5.54375 5.61182 5.68974 5.79124 5.87061 5.94279 6.11033 6.14705 6.19727 6.22691 6.30157 6.38270 6.40546 6.42941 6.50831 6.65457 6.71694 6.78778 6.88453 6.92095 6.98999 7.25174 7.31468 7.62179 7.71792 7.92494 7.98235 8.03790 8.29352 8.50649 8.75539 9.51968 10.89204 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.009445 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.578501 B = 2963.861196 C = 4385.315555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.044 3.956 4 C 0.130 3.870 5 C -0.175 4.175 6 C -0.121 4.121 7 O -0.560 6.560 8 C 0.224 3.776 9 H 0.014 0.986 10 C -0.572 4.572 11 H 0.060 0.940 12 C 0.024 3.976 13 N -0.904 5.904 14 Si 1.065 2.935 15 H -0.283 1.283 16 H -0.286 1.286 17 H -0.286 1.286 18 C -0.025 4.025 19 C -0.098 4.098 20 C -0.133 4.133 21 C -0.152 4.152 22 C -0.126 4.126 23 C -0.129 4.129 24 H 0.003 0.997 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.016 0.984 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.365 0.635 36 H 0.269 0.731 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.707 2.327 -6.535 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.085 4.085 4 C 0.090 3.910 5 C -0.233 4.233 6 C -0.178 4.178 7 O -0.366 6.366 8 C 0.118 3.882 9 H 0.032 0.968 10 C -0.610 4.610 11 H 0.079 0.921 12 C -0.182 4.182 13 N -0.540 5.540 14 Si 0.893 3.107 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.213 1.213 18 C -0.026 4.026 19 C -0.116 4.116 20 C -0.151 4.151 21 C -0.170 4.170 22 C -0.144 4.144 23 C -0.147 4.147 24 H 0.021 0.979 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.211 0.789 36 H 0.081 0.919 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.022 1.621 -6.533 7.379 hybrid contribution -1.728 0.721 0.545 1.950 sum -4.750 2.342 -5.988 7.994 Atomic orbital electron populations 1.22639 0.89851 1.00361 1.00507 1.62002 1.05290 1.11874 1.45264 1.22602 1.02872 0.89205 0.93833 1.21347 0.80391 0.93368 0.95905 1.22453 1.01819 0.97462 1.01594 1.21522 1.00488 1.00214 0.95564 1.86537 1.21793 1.71938 1.56283 1.18567 0.95213 0.86242 0.88196 0.96792 1.21750 0.89137 1.54593 0.95510 0.92124 1.25858 1.06768 0.93341 0.92232 1.70823 1.13017 1.44916 1.25231 0.83587 0.74395 0.76749 0.75933 1.20825 1.21257 1.21280 1.20446 0.91221 0.98748 0.92161 1.20917 0.98818 0.93360 0.98500 1.21037 1.00550 0.95945 0.97536 1.20824 1.03331 0.99306 0.93545 1.20927 1.01164 0.95039 0.97290 1.21006 0.99762 0.95673 0.98286 0.97884 0.90241 0.92685 0.96590 0.88294 0.91446 0.92334 0.92956 0.90494 0.93957 0.91595 0.78872 0.91894 0.86185 0.87452 0.87616 0.87508 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 8.76 60.07 0.53 0.80 16 2 N -0.52 -10.61 3.08 -237.69 -0.73 -11.35 16 3 C 0.04 0.83 4.17 -3.82 -0.02 0.81 16 4 C 0.13 2.05 1.15 -90.62 -0.10 1.94 16 5 C -0.18 -2.34 8.81 37.16 0.33 -2.01 16 6 C -0.12 -1.94 8.61 37.16 0.32 -1.62 16 7 O -0.56 -8.45 10.10 -35.23 -0.36 -8.81 16 8 C 0.22 5.29 1.67 -70.02 -0.12 5.17 16 9 H 0.01 0.38 5.98 -51.93 -0.31 0.07 16 10 C -0.57 -14.78 6.79 -34.44 -0.23 -15.02 16 11 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 12 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 13 N -0.90 -25.76 13.63 55.43 0.76 -25.00 16 14 Si 1.07 24.19 29.90 -169.99 -5.08 19.11 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 18 C -0.02 -0.55 3.35 -104.62 -0.35 -0.90 16 19 C -0.10 -2.04 8.60 -39.59 -0.34 -2.38 16 20 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 21 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 22 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 23 C -0.13 -2.79 9.67 -39.58 -0.38 -3.17 16 24 H 0.00 0.05 7.95 -51.93 -0.41 -0.36 16 25 H 0.08 1.40 5.84 -51.93 -0.30 1.10 16 26 H 0.05 1.07 6.18 -51.93 -0.32 0.75 16 27 H 0.02 0.30 7.90 -51.93 -0.41 -0.11 16 28 H 0.10 2.11 6.60 -51.93 -0.34 1.77 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.37 7.44 -51.93 -0.39 0.99 16 33 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.37 4.42 9.05 45.56 0.41 4.84 16 36 H 0.27 7.64 6.43 -40.82 -0.26 7.38 16 37 H 0.12 2.52 7.93 -52.48 -0.42 2.10 16 38 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 41 H 0.11 2.42 7.96 -52.49 -0.42 2.00 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -28.36 327.15 -7.90 -36.26 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.76 Total: 9.42 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -1.66 Total: -24.56 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.02 Total: -36.35 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.36 Total: -8.81 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.08 Total: 19.11 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.36 -7.90 -36.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092966441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.156 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds