Wall clock time and date at job start Mon Mar 30 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46910 * 110.99522 * 2 1 4 4 C 1.52999 * 109.47174 * 286.92614 * 3 2 1 5 5 C 1.53002 * 109.47030 * 186.49085 * 4 3 2 6 6 C 1.53001 * 109.47123 * 306.49328 * 4 3 2 7 7 O 1.42905 * 109.46719 * 66.49128 * 4 3 2 8 8 C 1.46895 * 111.00387 * 123.95385 * 2 1 3 9 9 H 1.09000 * 109.47059 * 296.05014 * 8 2 1 10 10 C 1.50693 * 109.47385 * 176.04661 * 8 2 1 11 11 H 1.08004 * 120.00208 * 324.84516 * 10 8 2 12 12 C 1.37875 * 120.00087 * 144.84021 * 10 8 2 13 13 N 1.31509 * 120.00400 * 0.09929 * 12 10 8 14 14 Si 1.86803 * 119.99949 * 180.08691 * 12 10 8 15 15 H 1.48504 * 109.47054 * 180.02562 * 14 12 10 16 16 H 1.48496 * 109.47475 * 300.00611 * 14 12 10 17 17 H 1.48497 * 109.46837 * 60.00821 * 14 12 10 18 18 C 1.50703 * 109.47171 * 56.04539 * 8 2 1 19 19 C 1.38231 * 119.99544 * 46.89452 * 18 8 2 20 20 C 1.38235 * 119.99895 * 179.79171 * 19 18 8 21 21 C 1.38239 * 120.00038 * 0.43814 * 20 19 18 22 22 C 1.38239 * 119.99747 * 359.81619 * 21 20 19 23 23 C 1.38232 * 119.99974 * 227.17317 * 18 8 2 24 24 H 1.09003 * 109.46681 * 307.52401 * 1 2 3 25 25 H 1.08996 * 109.47658 * 67.52036 * 1 2 3 26 26 H 1.08996 * 109.46907 * 187.52940 * 1 2 3 27 27 H 1.08999 * 109.47394 * 46.93189 * 3 2 1 28 28 H 1.08998 * 109.46438 * 166.92834 * 3 2 1 29 29 H 1.08996 * 109.47109 * 60.00151 * 5 4 3 30 30 H 1.09000 * 109.47033 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.46961 * 300.00267 * 5 4 3 32 32 H 1.08997 * 109.47519 * 60.00190 * 6 4 3 33 33 H 1.09008 * 109.46627 * 180.02562 * 6 4 3 34 34 H 1.08996 * 109.47059 * 299.99315 * 6 4 3 35 35 H 0.96697 * 114.00193 * 60.00220 * 7 4 3 36 36 H 0.97004 * 119.99305 * 354.30424 * 13 12 10 37 37 H 1.08006 * 120.00446 * 0.02562 * 19 18 8 38 38 H 1.08004 * 120.00684 * 180.27670 * 20 19 18 39 39 H 1.08000 * 120.00263 * 179.83567 * 21 20 19 40 40 H 1.08003 * 120.00193 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.00525 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.7860 1.9982 -1.3800 5 6 2.4759 3.3629 -1.4304 6 6 2.3845 1.0843 -2.4512 7 8 0.3871 2.1624 -1.6212 8 6 1.9955 -0.7659 1.1375 9 1 1.7044 -0.2799 2.0687 10 6 3.4988 -0.8254 1.0504 11 1 3.9819 -0.8875 0.0865 12 6 4.2575 -0.8004 2.2014 13 7 3.6694 -0.7266 3.3753 14 14 6.1211 -0.8716 2.0933 15 1 6.6982 -0.8309 3.4610 16 1 6.5302 -2.1309 1.4211 17 1 6.6163 0.2900 1.3119 18 6 1.4347 -2.1643 1.1042 19 6 1.4358 -2.8814 -0.0776 20 6 0.9253 -4.1657 -0.1072 21 6 0.4056 -4.7296 1.0429 22 6 0.3998 -4.0106 2.2235 23 6 0.9141 -2.7278 2.2541 24 1 -0.3633 0.6260 0.8151 25 1 -0.3634 0.3929 -0.9495 26 1 -0.3633 -1.0188 0.1347 27 1 1.4704 1.9622 0.7507 28 1 3.0601 1.3520 0.2324 29 1 3.5429 3.2377 -1.2463 30 1 2.3264 3.8095 -2.4134 31 1 2.0496 4.0139 -0.6672 32 1 1.8930 0.1120 -2.4154 33 1 2.2357 1.5310 -3.4343 34 1 3.4515 0.9591 -2.2672 35 1 -0.0587 2.7313 -0.9789 36 1 2.7083 -0.6066 3.4295 37 1 1.8388 -2.4396 -0.9770 38 1 0.9301 -4.7276 -1.0295 39 1 0.0043 -5.7320 1.0192 40 1 -0.0067 -4.4509 3.1221 41 1 0.9096 -2.1661 3.1765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092966441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:47 Heat of formation + Delta-G solvation = -44.076333 kcal Electronic energy + Delta-G solvation = -20993.277123 eV Core-core repulsion = 18065.118201 eV Total energy + Delta-G solvation = -2928.158921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57556 -39.44519 -37.16080 -34.72673 -33.29687 -31.86543 -31.60483 -28.74004 -28.11762 -27.49139 -25.47476 -23.65511 -23.11903 -21.52342 -21.09600 -18.85119 -17.65892 -17.32770 -16.72502 -16.33617 -16.01172 -15.67717 -15.52013 -15.25929 -14.95944 -14.39332 -14.08493 -14.05295 -13.68535 -13.40230 -13.15783 -13.05065 -12.98431 -12.88994 -12.65935 -12.48794 -12.32002 -12.19088 -11.99089 -11.87009 -11.73423 -11.50863 -10.84055 -10.64600 -10.48905 -9.67436 -9.32968 -9.00366 -8.53483 -6.28915 0.64049 0.70410 1.52171 1.58798 1.77287 2.54485 2.98456 3.25387 3.28419 3.46907 4.01764 4.05653 4.14217 4.23585 4.25007 4.34280 4.42196 4.51812 4.60726 4.63716 4.80863 4.81883 4.83940 4.94977 5.01512 5.03293 5.07918 5.09008 5.24135 5.27840 5.33289 5.37535 5.55562 5.70701 5.74014 5.90157 5.99826 6.07412 6.30445 6.49625 6.53442 6.75194 6.88447 7.48288 8.77442 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.009445 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.578501 B = 2963.861196 C = 4385.315555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.519 5.519 3 C 0.045 3.955 4 C 0.139 3.861 5 C -0.169 4.169 6 C -0.118 4.118 7 O -0.564 6.564 8 C 0.231 3.769 9 H -0.025 1.025 10 C -0.568 4.568 11 H 0.051 0.949 12 C -0.024 4.024 13 N -0.934 5.934 14 Si 1.106 2.894 15 H -0.289 1.289 16 H -0.276 1.276 17 H -0.266 1.266 18 C -0.048 4.048 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.141 4.141 22 C -0.126 4.126 23 C -0.154 4.154 24 H 0.000 1.000 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.010 0.990 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.379 0.621 36 H 0.256 0.744 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.134 0.866 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 1.430 -8.351 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.242 5.242 3 C -0.084 4.084 4 C 0.099 3.901 5 C -0.227 4.227 6 C -0.175 4.175 7 O -0.371 6.371 8 C 0.124 3.876 9 H -0.007 1.007 10 C -0.606 4.606 11 H 0.070 0.930 12 C -0.223 4.223 13 N -0.572 5.572 14 Si 0.928 3.072 15 H -0.215 1.215 16 H -0.202 1.202 17 H -0.191 1.191 18 C -0.050 4.050 19 C -0.130 4.130 20 C -0.144 4.144 21 C -0.159 4.159 22 C -0.144 4.144 23 C -0.173 4.173 24 H 0.019 0.981 25 H 0.114 0.886 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.067 0.933 37 H 0.131 0.869 38 H 0.161 0.839 39 H 0.166 0.834 40 H 0.152 0.848 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.520 0.739 -8.372 9.112 hybrid contribution -1.707 0.960 1.073 2.233 sum -5.226 1.699 -7.299 9.136 Atomic orbital electron populations 1.22571 0.88624 0.99894 1.01151 1.62012 1.06333 1.12485 1.43353 1.22648 1.00831 0.88694 0.96190 1.21192 0.81202 0.94425 0.93320 1.22381 1.01337 0.95936 1.03029 1.21479 0.99935 0.99380 0.96742 1.86493 1.21353 1.72531 1.56758 1.18362 0.94358 0.87501 0.87407 1.00714 1.21896 0.90595 1.53336 0.94785 0.93023 1.27062 1.10293 0.92986 0.91982 1.70921 1.12307 1.47819 1.26160 0.83074 0.70314 0.77881 0.75885 1.21455 1.20193 1.19077 1.20352 0.93073 0.98143 0.93383 1.20933 0.99867 0.94728 0.97442 1.21428 0.98769 0.94829 0.99377 1.21296 1.01571 1.00715 0.92331 1.21257 1.00125 0.93784 0.99214 1.21031 1.01617 0.97274 0.97337 0.98113 0.88608 0.93545 0.97195 0.91135 0.91727 0.90530 0.91948 0.92549 0.91926 0.92113 0.77218 0.93270 0.86941 0.83950 0.83395 0.84845 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 8.76 127.69 1.12 2.09 16 2 N -0.52 -21.76 3.08 -905.92 -2.79 -24.55 16 3 C 0.05 1.75 4.17 86.30 0.36 2.11 16 4 C 0.14 4.25 1.15 -10.79 -0.01 4.23 16 5 C -0.17 -4.20 8.81 71.98 0.63 -3.57 16 6 C -0.12 -3.68 8.61 71.98 0.62 -3.06 16 7 O -0.56 -16.01 10.10 -148.98 -1.50 -17.51 16 8 C 0.23 11.42 1.67 43.42 0.07 11.50 16 9 H -0.02 -1.39 5.98 -2.39 -0.01 -1.41 16 10 C -0.57 -30.47 6.79 25.60 0.17 -30.30 16 11 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 12 C -0.02 -1.33 5.46 84.66 0.46 -0.87 16 13 N -0.93 -55.73 13.63 21.45 0.29 -55.43 16 14 Si 1.11 49.51 29.90 68.60 2.05 51.56 16 15 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 C -0.05 -2.24 3.35 -19.87 -0.07 -2.31 16 19 C -0.11 -4.60 8.60 22.27 0.19 -4.41 16 20 C -0.13 -4.29 10.05 22.27 0.22 -4.07 16 21 C -0.14 -4.52 10.05 22.27 0.22 -4.29 16 22 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 23 C -0.15 -6.85 9.67 22.27 0.22 -6.64 16 24 H 0.00 0.01 7.95 -2.39 -0.02 -0.01 16 25 H 0.10 3.30 5.84 -2.39 -0.01 3.28 16 26 H 0.05 1.82 6.18 -2.39 -0.01 1.81 16 27 H 0.01 0.39 7.90 -2.39 -0.02 0.37 16 28 H 0.07 3.13 6.60 -2.39 -0.02 3.12 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.98 7.44 -2.39 -0.02 1.96 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 35 H 0.38 8.47 9.05 -74.06 -0.67 7.80 16 36 H 0.26 15.56 6.43 -92.70 -0.60 14.96 16 37 H 0.11 4.74 7.93 -2.91 -0.02 4.71 16 38 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 39 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.09 4.16 7.96 -2.91 -0.02 4.14 16 Total: -1.00 -63.48 327.15 3.00 -60.49 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.50 Total: 29.38 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 4.44 Total: -43.93 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.49 Total: -79.99 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -1.50 Total: -17.51 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 2.05 Total: 51.56 kcal Total: -63.48 3.00 -60.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092966441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.412 kcal (2) G-P(sol) polarization free energy of solvation -63.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds