Wall clock time and date at job start Mon Mar 30 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46974 * 2 1 4 4 C 1.53007 * 109.46807 * 119.99698 * 2 1 3 5 5 N 1.46894 * 109.47079 * 65.92191 * 4 2 1 6 6 C 1.46906 * 110.99991 * 211.91031 * 5 4 2 7 7 C 1.50695 * 109.46961 * 71.87385 * 6 5 4 8 8 H 1.08001 * 120.00322 * 5.04017 * 7 6 5 9 9 C 1.37874 * 119.99780 * 185.04442 * 7 6 5 10 10 N 1.31513 * 120.00425 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99963 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47036 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47399 * 120.00119 * 11 9 7 14 14 H 1.48505 * 109.46850 * 239.99814 * 11 9 7 15 15 C 1.46905 * 111.00165 * 87.95693 * 5 4 2 16 16 C 1.50703 * 109.46876 * 293.15418 * 15 5 4 17 17 C 1.38268 * 119.93950 * 97.65872 * 16 15 5 18 18 C 1.38144 * 120.05222 * 179.97438 * 17 16 15 19 19 C 1.38728 * 119.94699 * 0.02562 * 18 17 16 20 20 O 1.35899 * 120.05936 * 179.97438 * 19 18 17 21 21 C 1.38733 * 119.88769 * 0.27651 * 19 18 17 22 22 C 1.38147 * 119.94182 * 359.47145 * 21 19 18 23 23 H 1.08993 * 109.47011 * 64.84585 * 1 2 3 24 24 H 1.08997 * 109.47001 * 184.84910 * 1 2 3 25 25 H 1.09005 * 109.46925 * 304.84631 * 1 2 3 26 26 H 1.08992 * 109.46991 * 239.99516 * 2 1 3 27 27 H 1.08997 * 109.46960 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47285 * 299.99892 * 3 2 1 29 29 H 1.09002 * 109.47537 * 59.99862 * 3 2 1 30 30 H 1.08997 * 109.46948 * 305.92025 * 4 2 1 31 31 H 1.09001 * 109.46812 * 185.91806 * 4 2 1 32 32 H 1.09003 * 109.47157 * 191.87575 * 6 5 4 33 33 H 1.08999 * 109.46791 * 311.87178 * 6 5 4 34 34 H 0.96994 * 120.00930 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.47217 * 173.15905 * 15 5 4 36 36 H 1.08993 * 109.47274 * 53.15681 * 15 5 4 37 37 H 1.08001 * 119.97573 * 0.02798 * 17 16 15 38 38 H 1.08007 * 120.02423 * 179.97438 * 18 17 16 39 39 H 0.96701 * 113.99741 * 89.99826 * 20 19 18 40 40 H 1.07997 * 120.02836 * 179.71374 * 21 19 18 41 41 H 1.07998 * 119.97015 * 180.23260 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6705 -2.1412 1.1801 6 6 1.4291 -2.6885 2.5219 7 6 0.1353 -2.1375 3.0638 8 1 -0.4895 -1.5148 2.4407 9 6 -0.2506 -2.4285 4.3550 10 7 0.5099 -3.1871 5.1136 11 14 -1.8547 -1.7461 5.0265 12 1 -2.5210 -0.9285 3.9812 13 1 -2.7442 -2.8685 5.4194 14 1 -1.5738 -0.8985 6.2131 15 6 2.6962 -2.9182 0.4714 16 6 2.7295 -2.5029 -0.9769 17 6 3.6693 -1.5862 -1.4105 18 6 3.7023 -1.2042 -2.7377 19 6 2.7910 -1.7408 -3.6356 20 8 2.8210 -1.3663 -4.9416 21 6 1.8449 -2.6557 -3.1967 22 6 1.8195 -3.0384 -1.8696 23 1 -0.3633 0.4368 -0.9302 24 1 -0.3633 -1.0240 0.0869 25 1 -0.3633 0.5872 0.8434 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.5927 -0.2722 2.1361 31 1 3.1248 -0.6304 1.3039 32 1 1.3658 -3.7752 2.4651 33 1 2.2491 -2.4063 3.1822 34 1 0.2383 -3.3921 6.0219 35 1 2.4593 -3.9800 0.5395 36 1 3.6699 -2.7334 0.9248 37 1 4.3789 -1.1690 -0.7112 38 1 4.4364 -0.4878 -3.0758 39 1 3.3912 -1.9168 -5.4956 40 1 1.1315 -3.0714 -3.8929 41 1 1.0856 -3.7534 -1.5282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094680050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:01 Heat of formation + Delta-G solvation = -25.199967 kcal Electronic energy + Delta-G solvation = -20499.518362 eV Core-core repulsion = 17572.177982 eV Total energy + Delta-G solvation = -2927.340381 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84769 -37.80706 -36.08563 -33.98375 -32.51908 -30.84265 -30.30119 -27.00280 -26.52989 -25.84307 -23.72191 -22.59927 -21.38759 -20.38659 -19.33126 -18.33878 -16.42475 -15.74117 -15.61985 -15.18695 -14.91304 -14.41540 -14.18993 -13.75943 -13.37896 -13.27521 -13.23646 -12.51610 -12.30610 -12.09939 -11.94088 -11.68050 -11.49806 -11.36962 -11.10033 -10.96013 -10.71364 -10.56818 -10.36350 -10.25119 -10.05171 -9.80940 -9.71576 -9.21369 -8.77603 -8.42967 -8.17329 -7.22981 -6.01286 -4.01981 1.38263 1.52350 3.31482 3.39368 3.44618 3.76521 4.26781 4.44783 4.94331 5.07352 5.09645 5.20696 5.34133 5.51428 5.53777 5.58458 5.65113 5.85256 5.91645 5.94008 6.05067 6.17583 6.19046 6.24355 6.34752 6.41712 6.48137 6.54906 6.56672 6.62112 6.72850 6.88764 6.96127 7.05055 7.12732 7.28546 7.36758 7.67017 7.86597 8.11497 8.21580 8.56034 9.08098 9.62542 11.09239 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.005242 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.912744 B = 5340.547486 C = 5627.993106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 C -0.144 4.144 4 C 0.069 3.931 5 N -0.527 5.527 6 C 0.192 3.808 7 C -0.500 4.500 8 H 0.067 0.933 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.088 3.912 16 C -0.062 4.062 17 C -0.097 4.097 18 C -0.148 4.148 19 C 0.089 3.911 20 O -0.502 6.502 21 C -0.146 4.146 22 C -0.083 4.083 23 H 0.031 0.969 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.018 0.982 32 H 0.025 0.975 33 H -0.005 1.005 34 H 0.260 0.740 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.384 0.616 40 H 0.123 0.877 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.544 2.601 -15.148 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 C -0.202 4.202 4 C -0.059 4.059 5 N -0.251 5.251 6 C 0.067 3.933 7 C -0.539 4.539 8 H 0.085 0.915 9 C -0.146 4.146 10 N -0.541 5.541 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.040 4.040 16 C -0.063 4.063 17 C -0.115 4.115 18 C -0.167 4.167 19 C 0.045 3.955 20 O -0.312 6.312 21 C -0.164 4.164 22 C -0.101 4.101 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.238 0.762 40 H 0.141 0.859 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.711 2.915 -15.011 16.323 hybrid contribution 0.223 0.097 0.807 0.843 sum 5.933 3.012 -14.204 15.686 Atomic orbital electron populations 1.21658 0.95164 1.02917 0.99175 1.21401 0.96607 0.94451 0.99547 1.21804 1.00037 0.97323 1.00989 1.22065 0.96202 0.89477 0.98189 1.62078 1.39993 1.01280 1.21705 1.19782 0.96331 0.95170 0.81970 1.21232 1.05040 1.30584 0.97053 0.91473 1.24980 0.97234 0.95477 0.96950 1.69963 1.37710 1.37803 1.08578 0.86499 0.83666 0.78777 0.78856 1.19604 1.21104 1.21210 1.21118 0.94549 0.98840 0.89502 1.19992 0.94515 0.95646 0.96110 1.20911 0.98724 0.96961 0.94931 1.21273 0.99722 1.01786 0.93872 1.18419 0.96429 0.96666 0.84010 1.84839 1.70720 1.58276 1.17318 1.21366 0.99835 0.98351 0.96862 1.20934 0.97744 0.99598 0.91863 0.94958 0.90944 0.93636 0.90290 0.93655 0.93470 0.93067 0.90310 0.96343 0.95658 0.98735 0.93073 0.90417 0.95063 0.86132 0.86039 0.76165 0.85899 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.14 37.16 0.34 -2.02 16 2 C -0.10 -1.71 2.62 -90.62 -0.24 -1.95 16 3 C -0.14 -2.12 9.19 37.16 0.34 -1.78 16 4 C 0.07 1.33 3.93 -3.82 -0.02 1.31 16 5 N -0.53 -10.81 3.79 -237.51 -0.90 -11.71 16 6 C 0.19 4.83 4.67 -4.97 -0.02 4.81 16 7 C -0.50 -13.68 8.32 -34.44 -0.29 -13.97 16 8 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 11 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.09 1.52 5.01 -4.97 -0.02 1.50 16 16 C -0.06 -0.93 3.46 -104.60 -0.36 -1.29 16 17 C -0.10 -1.31 7.30 -39.60 -0.29 -1.60 16 18 C -0.15 -1.86 9.90 -39.43 -0.39 -2.25 16 19 C 0.09 1.13 6.70 -39.22 -0.26 0.87 16 20 O -0.50 -5.61 13.50 -19.42 -0.26 -5.87 16 21 C -0.15 -1.89 9.99 -39.43 -0.39 -2.29 16 22 C -0.08 -1.18 9.67 -39.61 -0.38 -1.57 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 1.45 7.66 -51.93 -0.40 1.05 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.33 3.85 -51.93 -0.20 1.13 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.72 7.04 -51.93 -0.37 1.36 16 31 H 0.02 0.34 7.64 -51.93 -0.40 -0.06 16 32 H 0.03 0.67 7.80 -51.93 -0.41 0.27 16 33 H -0.01 -0.14 8.05 -51.93 -0.42 -0.56 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.08 1.33 7.83 -51.93 -0.41 0.93 16 36 H 0.03 0.53 7.76 -51.93 -0.40 0.13 16 37 H 0.12 1.54 8.05 -52.49 -0.42 1.12 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.38 2.32 9.06 45.56 0.41 2.73 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -30.12 332.56 -8.45 -38.57 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.93 Total: 1.96 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.08 Total: -18.80 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.16 Total: -37.42 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.26 Total: -5.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.12 -8.45 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094680050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.367 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds