Wall clock time and date at job start Mon Mar 30 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46974 * 2 1 4 4 C 1.53007 * 109.46807 * 119.99698 * 2 1 3 5 5 N 1.46894 * 109.47079 * 65.92191 * 4 2 1 6 6 C 1.46906 * 110.99991 * 211.91031 * 5 4 2 7 7 C 1.50695 * 109.46961 * 71.87385 * 6 5 4 8 8 H 1.08001 * 120.00322 * 5.04017 * 7 6 5 9 9 C 1.37874 * 119.99780 * 185.04442 * 7 6 5 10 10 N 1.31513 * 120.00425 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99963 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47036 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47399 * 120.00119 * 11 9 7 14 14 H 1.48505 * 109.46850 * 239.99814 * 11 9 7 15 15 C 1.46905 * 111.00165 * 87.95693 * 5 4 2 16 16 C 1.50703 * 109.46876 * 293.15418 * 15 5 4 17 17 C 1.38268 * 119.93950 * 97.65872 * 16 15 5 18 18 C 1.38144 * 120.05222 * 179.97438 * 17 16 15 19 19 C 1.38728 * 119.94699 * 0.02562 * 18 17 16 20 20 O 1.35899 * 120.05936 * 179.97438 * 19 18 17 21 21 C 1.38733 * 119.88769 * 0.27651 * 19 18 17 22 22 C 1.38147 * 119.94182 * 359.47145 * 21 19 18 23 23 H 1.08993 * 109.47011 * 64.84585 * 1 2 3 24 24 H 1.08997 * 109.47001 * 184.84910 * 1 2 3 25 25 H 1.09005 * 109.46925 * 304.84631 * 1 2 3 26 26 H 1.08992 * 109.46991 * 239.99516 * 2 1 3 27 27 H 1.08997 * 109.46960 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47285 * 299.99892 * 3 2 1 29 29 H 1.09002 * 109.47537 * 59.99862 * 3 2 1 30 30 H 1.08997 * 109.46948 * 305.92025 * 4 2 1 31 31 H 1.09001 * 109.46812 * 185.91806 * 4 2 1 32 32 H 1.09003 * 109.47157 * 191.87575 * 6 5 4 33 33 H 1.08999 * 109.46791 * 311.87178 * 6 5 4 34 34 H 0.96994 * 120.00930 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.47217 * 173.15905 * 15 5 4 36 36 H 1.08993 * 109.47274 * 53.15681 * 15 5 4 37 37 H 1.08001 * 119.97573 * 0.02798 * 17 16 15 38 38 H 1.08007 * 120.02423 * 179.97438 * 18 17 16 39 39 H 0.96701 * 113.99741 * 89.99826 * 20 19 18 40 40 H 1.07997 * 120.02836 * 179.71374 * 21 19 18 41 41 H 1.07998 * 119.97015 * 180.23260 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 1.6705 -2.1412 1.1801 6 6 1.4291 -2.6885 2.5219 7 6 0.1353 -2.1375 3.0638 8 1 -0.4895 -1.5148 2.4407 9 6 -0.2506 -2.4285 4.3550 10 7 0.5099 -3.1871 5.1136 11 14 -1.8547 -1.7461 5.0265 12 1 -2.5210 -0.9285 3.9812 13 1 -2.7442 -2.8685 5.4194 14 1 -1.5738 -0.8985 6.2131 15 6 2.6962 -2.9182 0.4714 16 6 2.7295 -2.5029 -0.9769 17 6 3.6693 -1.5862 -1.4105 18 6 3.7023 -1.2042 -2.7377 19 6 2.7910 -1.7408 -3.6356 20 8 2.8210 -1.3663 -4.9416 21 6 1.8449 -2.6557 -3.1967 22 6 1.8195 -3.0384 -1.8696 23 1 -0.3633 0.4368 -0.9302 24 1 -0.3633 -1.0240 0.0869 25 1 -0.3633 0.5872 0.8434 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.5927 -0.2722 2.1361 31 1 3.1248 -0.6304 1.3039 32 1 1.3658 -3.7752 2.4651 33 1 2.2491 -2.4063 3.1822 34 1 0.2383 -3.3921 6.0219 35 1 2.4593 -3.9800 0.5395 36 1 3.6699 -2.7334 0.9248 37 1 4.3789 -1.1690 -0.7112 38 1 4.4364 -0.4878 -3.0758 39 1 3.3912 -1.9168 -5.4956 40 1 1.1315 -3.0714 -3.8929 41 1 1.0856 -3.7534 -1.5282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094680050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:00 Heat of formation + Delta-G solvation = -43.988645 kcal Electronic energy + Delta-G solvation = -20500.333101 eV Core-core repulsion = 17572.177982 eV Total energy + Delta-G solvation = -2928.155119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94350 -39.09386 -37.24522 -35.56231 -34.46672 -31.87233 -31.63935 -28.88357 -27.84986 -27.24293 -25.42862 -23.64429 -22.88660 -21.78875 -20.77997 -19.25348 -18.47277 -17.06224 -16.78548 -16.59343 -16.11734 -16.07911 -15.70388 -15.08784 -14.87587 -14.48833 -14.31645 -14.21946 -13.80345 -13.46721 -13.37148 -13.00607 -12.90675 -12.84131 -12.72324 -12.62193 -12.30814 -12.26843 -11.82612 -11.63474 -11.42004 -11.34922 -11.26239 -11.10424 -10.58918 -9.80554 -9.28177 -8.93710 -8.16854 -6.25463 0.34340 0.49840 1.39675 1.41046 1.54084 2.41107 2.72731 3.15357 3.36805 3.46473 3.93513 3.99278 4.11744 4.15736 4.24467 4.39177 4.48526 4.53145 4.68182 4.72376 4.78998 4.89198 4.94653 4.99739 5.02806 5.12691 5.14648 5.18582 5.24628 5.27728 5.38058 5.44767 5.53800 5.61429 5.69280 5.73565 5.80067 5.96806 6.12531 6.42000 6.68429 6.92376 6.94595 7.43933 8.93498 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.005242 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.912744 B = 5340.547486 C = 5627.993106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 C -0.140 4.140 4 C 0.074 3.926 5 N -0.529 5.529 6 C 0.208 3.792 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.961 3.039 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.090 3.910 16 C -0.078 4.078 17 C -0.096 4.096 18 C -0.146 4.146 19 C 0.098 3.902 20 O -0.509 6.509 21 C -0.149 4.149 22 C -0.091 4.091 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.003 0.997 33 H -0.035 1.035 34 H 0.262 0.738 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.128 0.872 38 H 0.144 0.856 39 H 0.408 0.592 40 H 0.138 0.862 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 4.058 -17.296 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.112 4.112 3 C -0.197 4.197 4 C -0.054 4.054 5 N -0.252 5.252 6 C 0.082 3.918 7 C -0.548 4.548 8 H 0.082 0.918 9 C -0.195 4.195 10 N -0.577 5.577 11 Si 0.786 3.214 12 H -0.189 1.189 13 H -0.205 1.205 14 H -0.206 1.206 15 C -0.038 4.038 16 C -0.078 4.078 17 C -0.114 4.114 18 C -0.164 4.164 19 C 0.054 3.946 20 O -0.322 6.322 21 C -0.168 4.168 22 C -0.110 4.110 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.021 0.979 33 H -0.018 1.018 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.146 0.854 38 H 0.162 0.838 39 H 0.267 0.733 40 H 0.156 0.844 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.809 4.370 -17.196 18.670 hybrid contribution 0.259 -0.380 1.349 1.426 sum 6.069 3.990 -15.847 17.432 Atomic orbital electron populations 1.21599 0.95978 1.01179 0.99748 1.21352 0.95816 0.95836 0.98233 1.21764 1.00972 0.95405 1.01589 1.22030 0.96562 0.88525 0.98265 1.62022 1.42014 1.02320 1.18894 1.19423 0.94682 0.93754 0.83980 1.21487 1.05684 1.30290 0.97337 0.91831 1.25819 1.00626 0.95732 0.97304 1.70081 1.39567 1.39073 1.08987 0.85457 0.79505 0.78220 0.78211 1.18931 1.20513 1.20614 1.21099 0.93496 0.98105 0.91101 1.19729 0.96253 0.97472 0.94394 1.20976 0.98286 0.96415 0.95772 1.21474 0.99990 1.01825 0.93136 1.18491 0.95699 0.95600 0.84848 1.84775 1.71615 1.59032 1.16732 1.21510 1.00373 0.98519 0.96347 1.20940 0.97636 0.99792 0.92623 0.92941 0.93553 0.94669 0.89542 0.92217 0.91856 0.93487 0.93516 0.95378 0.97925 1.01761 0.92877 0.91147 0.94873 0.85423 0.83827 0.73285 0.84376 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.14 71.98 0.66 -3.83 16 2 C -0.09 -3.06 2.62 -10.79 -0.03 -3.08 16 3 C -0.14 -3.77 9.19 71.98 0.66 -3.11 16 4 C 0.07 2.89 3.93 86.31 0.34 3.22 16 5 N -0.53 -22.41 3.79 -905.35 -3.43 -25.84 16 6 C 0.21 10.97 4.67 85.55 0.40 11.37 16 7 C -0.51 -28.75 8.32 25.60 0.21 -28.54 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.00 0.15 5.46 84.65 0.46 0.62 16 10 N -0.94 -56.41 13.29 21.45 0.28 -56.13 16 11 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 15 C 0.09 3.18 5.01 85.56 0.43 3.60 16 16 C -0.08 -2.28 3.46 -19.85 -0.07 -2.35 16 17 C -0.10 -2.40 7.30 22.25 0.16 -2.24 16 18 C -0.15 -3.18 9.90 22.36 0.22 -2.96 16 19 C 0.10 2.18 6.70 22.51 0.15 2.33 16 20 O -0.51 -9.39 13.50 -92.41 -1.25 -10.64 16 21 C -0.15 -3.54 9.99 22.37 0.22 -3.32 16 22 C -0.09 -2.54 9.67 22.25 0.22 -2.32 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.05 1.85 7.66 -2.39 -0.02 1.83 16 25 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.09 2.74 3.85 -2.39 -0.01 2.73 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 2.10 7.04 -2.39 -0.02 2.08 16 31 H 0.03 1.02 7.64 -2.39 -0.02 1.00 16 32 H 0.00 0.15 7.80 -2.39 -0.02 0.13 16 33 H -0.04 -2.04 8.05 -2.39 -0.02 -2.06 16 34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.07 2.54 7.83 -2.38 -0.02 2.52 16 36 H 0.03 1.15 7.76 -2.39 -0.02 1.13 16 37 H 0.13 2.98 8.05 -2.91 -0.02 2.95 16 38 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.41 3.29 9.06 -74.06 -0.67 2.62 16 40 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 41 H 0.12 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -65.38 332.56 2.00 -63.38 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.33 Total: 12.98 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 4.04 Total: -30.60 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.15 Total: -81.96 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -1.25 Total: -10.64 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.38 2.00 -63.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094680050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.393 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds