Wall clock time and date at job start Mon Mar 30 2020 07:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47404 * 2 1 4 4 N 1.46903 * 109.47245 * 180.02562 * 3 2 1 5 5 C 1.46899 * 110.99752 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47132 * 35.00068 * 5 4 3 7 7 C 1.52995 * 109.46932 * 274.99891 * 5 4 3 8 8 C 1.50702 * 109.46888 * 154.99944 * 5 4 3 9 9 C 1.38128 * 120.03239 * 24.99938 * 8 5 4 10 10 C 1.38282 * 120.06370 * 179.97438 * 9 8 5 11 11 C 1.38316 * 120.14100 * 359.95157 * 10 9 8 12 12 C 1.50706 * 119.96703 * 180.02562 * 11 10 9 13 13 C 1.38081 * 120.07039 * 0.05141 * 11 10 9 14 14 C 1.38852 * 120.03431 * 204.72065 * 8 5 4 15 15 O 1.35750 * 120.06954 * 359.97438 * 14 8 5 16 16 C 1.34827 * 117.00021 * 174.16822 * 15 14 8 17 17 H 1.07998 * 119.99984 * 5.07014 * 16 15 14 18 18 C 1.38653 * 120.00191 * 185.06897 * 16 15 14 19 19 N 1.31558 * 120.00308 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99967 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47185 * 89.99990 * 20 18 16 22 22 H 1.48502 * 109.47266 * 210.00375 * 20 18 16 23 23 H 1.48501 * 109.47170 * 330.00062 * 20 18 16 24 24 H 1.08997 * 109.46920 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46686 * 299.99967 * 1 2 3 26 26 H 1.08998 * 109.46802 * 59.99811 * 1 2 3 27 27 H 1.09008 * 109.46997 * 240.00033 * 2 1 3 28 28 H 1.08999 * 109.47261 * 120.00461 * 2 1 3 29 29 H 1.08999 * 109.47288 * 300.00444 * 3 2 1 30 30 H 1.08997 * 109.46678 * 60.00336 * 3 2 1 31 31 H 1.00896 * 110.99584 * 303.96096 * 4 3 2 32 32 H 1.09000 * 109.47628 * 60.00260 * 7 5 4 33 33 H 1.09001 * 109.46996 * 180.02562 * 7 5 4 34 34 H 1.08999 * 109.47357 * 300.00040 * 7 5 4 35 35 H 1.07996 * 119.96768 * 359.97438 * 9 8 5 36 36 H 1.08001 * 119.92294 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.46983 * 90.00038 * 12 11 10 38 38 H 1.08993 * 109.47059 * 210.00371 * 12 11 10 39 39 H 1.08999 * 109.46573 * 330.00452 * 12 11 10 40 40 H 1.08000 * 120.03740 * 180.02562 * 13 11 10 41 41 H 0.97007 * 119.99987 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5092 1.4424 -0.0006 5 6 4.0356 2.8139 0.0000 6 1 3.3801 3.4544 0.5901 7 6 4.1004 3.3358 -1.4367 8 6 5.4180 2.8210 0.5999 9 6 6.1909 1.6766 0.5690 10 6 7.4597 1.6825 1.1188 11 6 7.9593 2.8338 1.7002 12 6 9.3429 2.8361 2.2978 13 6 7.1915 3.9810 1.7343 14 6 5.9183 3.9795 1.1791 15 8 5.1635 5.1075 1.2055 16 6 5.6589 6.1597 1.8876 17 1 6.6507 6.1095 2.3121 18 6 4.8950 7.3062 2.0442 19 7 5.3785 8.3331 2.7094 20 14 3.1792 7.3928 1.3106 21 1 2.1912 6.8983 2.3027 22 1 2.8630 8.7997 0.9558 23 1 3.1196 6.5492 0.0899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9564 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.8710 0.9161 0.7804 32 1 3.1005 3.3307 -1.8707 33 1 4.4914 4.3533 -1.4363 34 1 4.7558 2.6953 -2.0268 35 1 5.8039 0.7763 0.1150 36 1 8.0619 0.7864 1.0937 37 1 10.0671 3.1246 1.5360 38 1 9.3810 3.5469 3.1231 39 1 9.5810 1.8383 2.6662 40 1 7.5823 4.8798 2.1881 41 1 4.8442 9.1353 2.8185 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110961549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:28 Heat of formation + Delta-G solvation = -21.475656 kcal Electronic energy + Delta-G solvation = -20054.033025 eV Core-core repulsion = 17126.854142 eV Total energy + Delta-G solvation = -2927.178882 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.57253 -37.24216 -36.49791 -34.00680 -32.41409 -31.30276 -29.53401 -28.93400 -26.47273 -25.48344 -24.62593 -22.07126 -21.47582 -20.83834 -19.74847 -17.86839 -16.83538 -15.93741 -15.39405 -15.09217 -14.36922 -14.25413 -13.95272 -13.74743 -13.56595 -13.41706 -12.97492 -12.93238 -12.56307 -12.33043 -12.21423 -11.99916 -11.84470 -11.64611 -11.35004 -11.20391 -11.08296 -10.90544 -10.76708 -10.56326 -10.53610 -10.40200 -10.08634 -9.37379 -8.88144 -8.21702 -7.95189 -7.31845 -6.43064 -4.09508 2.04967 2.29504 3.18996 3.22771 3.37101 4.21121 4.33608 4.44572 4.84986 4.95645 5.05731 5.07866 5.26321 5.34650 5.47508 5.55125 5.60719 5.69779 5.74474 5.80689 5.90511 5.93993 5.97233 5.99977 6.04239 6.16027 6.18985 6.24324 6.27240 6.32553 6.43202 6.63565 6.72675 6.85400 7.02170 7.13655 7.34058 7.46327 7.61707 7.66966 7.80470 8.03839 8.92630 9.54970 10.64788 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.007732 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.093086 B = 3620.293272 C = 5532.803326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.686 5.686 5 C 0.140 3.860 6 H 0.052 0.948 7 C -0.129 4.129 8 C -0.168 4.168 9 C -0.065 4.065 10 C -0.204 4.204 11 C -0.047 4.047 12 C -0.111 4.111 13 C -0.220 4.220 14 C 0.167 3.833 15 O -0.214 6.214 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.065 3.935 19 N -0.880 5.880 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.257 1.257 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.340 0.660 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.132 0.868 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 -13.453 -4.210 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.318 5.318 5 C 0.032 3.968 6 H 0.070 0.930 7 C -0.186 4.186 8 C -0.170 4.170 9 C -0.083 4.083 10 C -0.223 4.223 11 C -0.047 4.047 12 C -0.167 4.167 13 C -0.239 4.239 14 C 0.115 3.885 15 O -0.119 6.119 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.138 4.138 19 N -0.518 5.518 20 Si 0.725 3.275 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.181 1.181 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.159 0.841 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.150 0.850 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.287 -13.212 -4.913 14.474 hybrid contribution -0.748 0.620 0.806 1.262 sum -4.035 -12.592 -4.108 13.846 Atomic orbital electron populations 1.21733 0.95867 1.01443 1.01832 1.21494 0.95318 0.96712 1.02353 1.22043 0.88358 0.96478 1.00553 1.60695 1.06690 1.14531 1.49862 1.20047 0.92262 0.88318 0.96221 0.93043 1.21702 1.00796 1.00924 0.95225 1.18949 0.97340 0.92601 1.08108 1.20551 0.93387 0.96757 0.97638 1.20538 0.97106 0.97737 1.06946 1.19608 0.95273 0.93263 0.96605 1.20752 0.93849 1.01809 1.00336 1.21111 0.95231 0.99327 1.08242 1.18853 0.90148 0.86269 0.93238 1.83571 1.44371 1.18720 1.65244 1.20755 1.02940 0.90661 1.32051 0.87704 1.24430 0.99365 0.94083 0.95947 1.69645 1.38309 1.04593 1.39248 0.86265 0.82942 0.77578 0.80677 1.20019 1.20758 1.18122 0.92767 0.92859 0.92715 0.91262 0.92286 0.91182 0.95391 0.84116 0.93563 0.92064 0.92434 0.85905 0.87514 0.91708 0.91866 0.92208 0.85000 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.28 6.19 -26.73 -0.17 -1.45 16 3 C 0.06 0.73 5.48 -3.82 -0.02 0.70 16 4 N -0.69 -10.13 5.57 -107.95 -0.60 -10.74 16 5 C 0.14 2.53 2.55 -68.87 -0.18 2.36 16 6 H 0.05 1.05 7.36 -51.93 -0.38 0.67 16 7 C -0.13 -2.23 9.40 37.16 0.35 -1.88 16 8 C -0.17 -3.30 4.94 -104.43 -0.52 -3.82 16 9 C -0.06 -1.12 8.86 -39.61 -0.35 -1.47 16 10 C -0.20 -3.46 9.70 -39.54 -0.38 -3.84 16 11 C -0.05 -0.86 5.88 -104.65 -0.62 -1.48 16 12 C -0.11 -1.62 10.01 36.01 0.36 -1.26 16 13 C -0.22 -4.77 8.82 -39.39 -0.35 -5.12 16 14 C 0.17 3.83 6.62 -39.11 -0.26 3.57 16 15 O -0.21 -5.53 7.73 0.06 0.00 -5.53 16 16 C -0.39 -10.84 9.95 30.89 0.31 -10.53 16 17 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 18 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 19 N -0.88 -25.34 13.96 55.48 0.77 -24.57 16 20 Si 0.90 21.57 28.62 -169.99 -4.86 16.71 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.93 7.43 -51.93 -0.39 0.55 16 30 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.34 4.83 7.26 -39.29 -0.29 4.54 16 32 H 0.05 0.72 7.45 -51.93 -0.39 0.34 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.12 1.84 6.97 -52.49 -0.37 1.47 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 41 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -28.39 334.29 -7.78 -36.17 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.59 Total: 6.44 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -1.54 Total: -23.52 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.17 Total: -35.30 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: 0.00 Total: -5.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.86 Total: 16.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.39 -7.78 -36.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110961549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.697 kcal (2) G-P(sol) polarization free energy of solvation -28.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds