Wall clock time and date at job start Mon Mar 30 2020 07:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47404 * 2 1 4 4 N 1.46903 * 109.47245 * 180.02562 * 3 2 1 5 5 C 1.46899 * 110.99752 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47132 * 35.00068 * 5 4 3 7 7 C 1.52995 * 109.46932 * 274.99891 * 5 4 3 8 8 C 1.50702 * 109.46888 * 154.99944 * 5 4 3 9 9 C 1.38128 * 120.03239 * 24.99938 * 8 5 4 10 10 C 1.38282 * 120.06370 * 179.97438 * 9 8 5 11 11 C 1.38316 * 120.14100 * 359.95157 * 10 9 8 12 12 C 1.50706 * 119.96703 * 180.02562 * 11 10 9 13 13 C 1.38081 * 120.07039 * 0.05141 * 11 10 9 14 14 C 1.38852 * 120.03431 * 204.72065 * 8 5 4 15 15 O 1.35750 * 120.06954 * 359.97438 * 14 8 5 16 16 C 1.34827 * 117.00021 * 174.16822 * 15 14 8 17 17 H 1.07998 * 119.99984 * 5.07014 * 16 15 14 18 18 C 1.38653 * 120.00191 * 185.06897 * 16 15 14 19 19 N 1.31558 * 120.00308 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99967 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47185 * 89.99990 * 20 18 16 22 22 H 1.48502 * 109.47266 * 210.00375 * 20 18 16 23 23 H 1.48501 * 109.47170 * 330.00062 * 20 18 16 24 24 H 1.08997 * 109.46920 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46686 * 299.99967 * 1 2 3 26 26 H 1.08998 * 109.46802 * 59.99811 * 1 2 3 27 27 H 1.09008 * 109.46997 * 240.00033 * 2 1 3 28 28 H 1.08999 * 109.47261 * 120.00461 * 2 1 3 29 29 H 1.08999 * 109.47288 * 300.00444 * 3 2 1 30 30 H 1.08997 * 109.46678 * 60.00336 * 3 2 1 31 31 H 1.00896 * 110.99584 * 303.96096 * 4 3 2 32 32 H 1.09000 * 109.47628 * 60.00260 * 7 5 4 33 33 H 1.09001 * 109.46996 * 180.02562 * 7 5 4 34 34 H 1.08999 * 109.47357 * 300.00040 * 7 5 4 35 35 H 1.07996 * 119.96768 * 359.97438 * 9 8 5 36 36 H 1.08001 * 119.92294 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.46983 * 90.00038 * 12 11 10 38 38 H 1.08993 * 109.47059 * 210.00371 * 12 11 10 39 39 H 1.08999 * 109.46573 * 330.00452 * 12 11 10 40 40 H 1.08000 * 120.03740 * 180.02562 * 13 11 10 41 41 H 0.97007 * 119.99987 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5092 1.4424 -0.0006 5 6 4.0356 2.8139 0.0000 6 1 3.3801 3.4544 0.5901 7 6 4.1004 3.3358 -1.4367 8 6 5.4180 2.8210 0.5999 9 6 6.1909 1.6766 0.5690 10 6 7.4597 1.6825 1.1188 11 6 7.9593 2.8338 1.7002 12 6 9.3429 2.8361 2.2978 13 6 7.1915 3.9810 1.7343 14 6 5.9183 3.9795 1.1791 15 8 5.1635 5.1075 1.2055 16 6 5.6589 6.1597 1.8876 17 1 6.6507 6.1095 2.3121 18 6 4.8950 7.3062 2.0442 19 7 5.3785 8.3331 2.7094 20 14 3.1792 7.3928 1.3106 21 1 2.1912 6.8983 2.3027 22 1 2.8630 8.7997 0.9558 23 1 3.1196 6.5492 0.0899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9564 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.8710 0.9161 0.7804 32 1 3.1005 3.3307 -1.8707 33 1 4.4914 4.3533 -1.4363 34 1 4.7558 2.6953 -2.0268 35 1 5.8039 0.7763 0.1150 36 1 8.0619 0.7864 1.0937 37 1 10.0671 3.1246 1.5360 38 1 9.3810 3.5469 3.1231 39 1 9.5810 1.8383 2.6662 40 1 7.5823 4.8798 2.1881 41 1 4.8442 9.1353 2.8185 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110961549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:28 Heat of formation + Delta-G solvation = -37.722053 kcal Electronic energy + Delta-G solvation = -20054.737521 eV Core-core repulsion = 17126.854142 eV Total energy + Delta-G solvation = -2927.883379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20782 -38.80278 -37.90270 -35.15065 -34.44123 -32.58309 -30.97703 -30.35547 -27.99474 -27.16055 -25.84879 -23.57210 -22.74199 -22.09065 -21.29265 -19.79245 -18.51941 -17.27205 -16.97397 -16.32417 -16.05744 -15.80839 -15.33651 -15.26358 -15.04637 -14.74494 -14.31460 -14.26899 -14.18213 -14.02289 -13.32793 -13.22330 -13.12227 -13.02605 -12.87234 -12.64119 -12.35507 -12.26872 -12.15516 -12.08246 -11.82612 -11.74309 -11.53857 -11.18425 -10.92345 -9.51096 -9.45876 -8.97878 -8.52495 -6.23559 0.51188 0.71031 1.25676 1.29127 1.46081 2.23355 2.74379 3.03843 3.13276 3.14459 3.80445 4.08761 4.13194 4.16308 4.18114 4.34309 4.42591 4.46991 4.55869 4.63392 4.67230 4.75302 4.83014 4.87095 4.88009 4.95167 4.98843 5.02997 5.06605 5.19467 5.28368 5.34032 5.38224 5.39434 5.45559 5.59262 5.74340 5.83200 5.91969 6.10649 6.29659 6.46273 6.82876 7.58554 8.59477 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.007732 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.093086 B = 3620.293272 C = 5532.803326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.053 3.947 4 N -0.672 5.672 5 C 0.144 3.856 6 H 0.020 0.980 7 C -0.123 4.123 8 C -0.168 4.168 9 C -0.057 4.057 10 C -0.183 4.183 11 C -0.052 4.052 12 C -0.109 4.109 13 C -0.242 4.242 14 C 0.128 3.872 15 O -0.238 6.238 16 C -0.395 4.395 17 H 0.079 0.921 18 C 0.014 3.986 19 N -0.923 5.923 20 Si 0.961 3.039 21 H -0.269 1.269 22 H -0.267 1.267 23 H -0.260 1.260 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.016 0.984 31 H 0.345 0.655 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -17.094 -5.393 18.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.077 4.077 4 N -0.304 5.304 5 C 0.034 3.966 6 H 0.038 0.962 7 C -0.181 4.181 8 C -0.170 4.170 9 C -0.075 4.075 10 C -0.201 4.201 11 C -0.052 4.052 12 C -0.166 4.166 13 C -0.262 4.262 14 C 0.079 3.921 15 O -0.145 6.145 16 C -0.471 4.471 17 H 0.096 0.904 18 C -0.185 4.185 19 N -0.564 5.564 20 Si 0.784 3.216 21 H -0.194 1.194 22 H -0.191 1.191 23 H -0.185 1.185 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.165 0.835 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.174 0.826 36 H 0.169 0.831 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.584 -16.897 -6.099 18.318 hybrid contribution -0.484 1.469 1.161 1.934 sum -4.068 -15.428 -4.939 16.702 Atomic orbital electron populations 1.21728 0.94839 1.02439 1.01752 1.21435 0.96137 0.94595 1.02868 1.22143 0.87198 0.98393 0.99929 1.60711 1.07747 1.12133 1.49856 1.19919 0.91041 0.89686 0.95906 0.96155 1.21627 1.01885 0.99480 0.95068 1.19272 0.98413 0.92154 1.07139 1.20965 0.93227 0.96692 0.96647 1.21086 0.96963 0.98316 1.03763 1.20044 0.96581 0.92379 0.96203 1.20819 0.91772 1.03605 1.00366 1.21156 0.95784 1.00022 1.09216 1.19425 0.90866 0.86687 0.95161 1.83528 1.45150 1.19234 1.66602 1.20680 1.02207 0.91941 1.32312 0.90373 1.25180 1.03037 0.93693 0.96568 1.69727 1.39961 1.05389 1.41338 0.85354 0.78475 0.78087 0.79726 1.19400 1.19145 1.18453 0.91232 0.93256 0.92561 0.90693 0.91734 0.91330 0.96620 0.83540 0.91972 0.94814 0.91151 0.82564 0.83148 0.90292 0.92661 0.89018 0.87810 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.68 16 2 C -0.11 -2.07 6.19 30.60 0.19 -1.88 16 3 C 0.05 1.29 5.48 86.30 0.47 1.76 16 4 N -0.67 -18.31 5.57 -495.46 -2.76 -21.07 16 5 C 0.14 5.11 2.55 44.17 0.11 5.22 16 6 H 0.02 0.85 7.36 -2.39 -0.02 0.84 16 7 C -0.12 -4.16 9.40 71.98 0.68 -3.48 16 8 C -0.17 -6.47 4.94 -19.74 -0.10 -6.57 16 9 C -0.06 -1.77 8.86 22.25 0.20 -1.57 16 10 C -0.18 -5.43 9.70 22.30 0.22 -5.21 16 11 C -0.05 -1.81 5.88 -19.88 -0.12 -1.93 16 12 C -0.11 -2.93 10.01 71.24 0.71 -2.21 16 13 C -0.24 -10.90 8.82 22.39 0.20 -10.70 16 14 C 0.13 6.07 6.62 22.58 0.15 6.22 16 15 O -0.24 -12.97 7.73 -22.71 -0.18 -13.15 16 16 C -0.39 -23.54 9.95 67.92 0.68 -22.86 16 17 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 18 C 0.01 0.79 5.49 84.83 0.47 1.26 16 19 N -0.92 -55.79 13.96 21.61 0.30 -55.49 16 20 Si 0.96 46.17 28.62 68.60 1.96 48.14 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.71 7.43 -2.39 -0.02 1.69 16 30 H 0.02 0.42 8.05 -2.39 -0.02 0.41 16 31 H 0.35 8.78 7.26 -89.70 -0.65 8.13 16 32 H 0.06 1.87 7.45 -2.39 -0.02 1.85 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.16 3.85 6.97 -2.91 -0.02 3.83 16 36 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 39 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 40 H 0.10 5.18 5.64 -2.91 -0.02 5.17 16 41 H 0.28 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -65.54 334.29 4.25 -61.28 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.36 Total: 23.94 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 4.57 Total: -43.65 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -2.46 Total: -76.56 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.18 Total: -13.15 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.96 Total: 48.14 kcal Total: -65.54 4.25 -61.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110961549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.562 kcal (2) G-P(sol) polarization free energy of solvation -65.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds