Wall clock time and date at job start Mon Mar 30 2020 06:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47403 * 2 1 4 4 H 1.09000 * 109.47020 * 54.99378 * 3 2 1 5 5 O 1.42901 * 109.46683 * 294.99884 * 3 2 1 6 6 C 1.50692 * 109.47238 * 174.99850 * 3 2 1 7 7 C 1.38126 * 120.03731 * 94.97615 * 6 3 2 8 8 C 1.38264 * 120.08012 * 180.02562 * 7 6 3 9 9 C 1.38313 * 120.14336 * 359.97438 * 8 7 6 10 10 C 1.38077 * 120.07608 * 359.73886 * 9 8 7 11 11 C 1.38887 * 120.03892 * 275.00002 * 6 3 2 12 12 N 1.39671 * 120.07639 * 359.95131 * 11 6 3 13 13 C 1.46898 * 111.00239 * 243.95707 * 12 11 6 14 14 C 1.53001 * 109.47197 * 163.47083 * 13 12 11 15 15 C 1.46907 * 110.99911 * 119.99964 * 12 11 6 16 16 C 1.50692 * 109.47153 * 201.05604 * 15 12 11 17 17 H 1.08004 * 120.00111 * 5.48935 * 16 15 12 18 18 C 1.37880 * 120.00204 * 185.49313 * 16 15 12 19 19 N 1.31509 * 120.00178 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99733 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47443 * 90.00209 * 20 18 16 22 22 H 1.48502 * 109.47365 * 210.00366 * 20 18 16 23 23 H 1.48505 * 109.47329 * 330.00290 * 20 18 16 24 24 H 1.08994 * 109.47425 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46759 * 300.00178 * 1 2 3 26 26 H 1.08994 * 109.47182 * 59.99617 * 1 2 3 27 27 H 1.08996 * 109.46806 * 239.99240 * 2 1 3 28 28 H 1.09005 * 109.46907 * 119.99681 * 2 1 3 29 29 H 0.96697 * 114.00067 * 300.00406 * 5 3 2 30 30 H 1.08001 * 119.96322 * 0.02562 * 7 6 3 31 31 H 1.08002 * 119.92832 * 179.97438 * 8 7 6 32 32 H 1.08004 * 119.96048 * 179.97438 * 9 8 7 33 33 H 1.08007 * 120.03997 * 180.27905 * 10 9 8 34 34 H 1.09000 * 109.47017 * 283.47119 * 13 12 11 35 35 H 1.09000 * 109.47279 * 43.46702 * 13 12 11 36 36 H 1.09000 * 109.46697 * 307.88368 * 14 13 12 37 37 H 1.09000 * 109.46853 * 67.87810 * 14 13 12 38 38 H 1.08998 * 109.47187 * 187.88330 * 14 13 12 39 39 H 1.08992 * 109.47233 * 321.06018 * 15 12 11 40 40 H 1.09000 * 109.46571 * 81.05385 * 15 12 11 41 41 H 0.96998 * 120.00235 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6621 2.0813 -1.2211 6 6 3.5419 1.4443 0.1239 7 6 4.3290 1.5141 -1.0090 8 6 5.7071 1.5153 -0.8965 9 6 6.3021 1.4470 0.3503 10 6 5.5212 1.3830 1.4872 11 6 4.1362 1.3751 1.3772 12 7 3.3434 1.3049 2.5250 13 6 3.5338 2.4914 3.3698 14 6 2.3857 2.5904 4.3763 15 6 3.6152 0.0732 3.2780 16 6 2.4452 -0.2349 4.1763 17 1 1.5501 0.3671 4.1229 18 6 2.5173 -1.2853 5.0666 19 7 1.4961 -1.5545 5.8502 20 14 4.0652 -2.3269 5.1586 21 1 4.9968 -1.7422 6.1564 22 1 3.7080 -3.7096 5.5657 23 1 4.7216 -2.3570 3.8268 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0142 1.6541 -2.0139 30 1 3.8675 1.5679 -1.9840 31 1 6.3202 1.5695 -1.7839 32 1 7.3789 1.4477 0.4348 33 1 5.9865 1.3342 2.4607 34 1 4.4799 2.4085 3.9048 35 1 3.5470 3.3843 2.7447 36 1 1.4338 2.5324 3.8485 37 1 2.4562 1.7693 5.0897 38 1 2.4493 3.5400 4.9077 39 1 3.7664 -0.7521 2.5824 40 1 4.5121 0.2076 3.8827 41 1 1.5467 -2.2937 6.4762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123360043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:41 Heat of formation + Delta-G solvation = -42.250478 kcal Electronic energy + Delta-G solvation = -20896.290614 eV Core-core repulsion = 17968.210868 eV Total energy + Delta-G solvation = -2928.079746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19624 -38.61615 -37.56508 -34.63750 -33.70371 -32.17773 -31.85064 -30.77801 -28.58850 -26.66620 -24.15226 -23.78857 -23.03942 -21.77287 -21.37747 -19.12303 -18.21784 -17.16393 -17.00865 -16.53304 -16.31520 -15.60335 -15.54716 -15.37979 -14.96919 -14.85974 -14.54603 -13.93449 -13.75017 -13.43897 -13.25313 -13.10855 -12.99755 -12.82090 -12.71400 -12.55402 -12.41783 -12.11411 -11.92224 -11.79800 -11.74385 -11.54109 -11.24472 -10.95068 -10.70370 -9.71890 -9.42661 -9.20108 -8.23503 -6.21978 0.41592 0.45084 1.29724 1.32979 1.41591 2.33736 2.80359 3.08272 3.08367 3.58308 3.75611 4.01947 4.16302 4.19479 4.22389 4.27588 4.38571 4.48747 4.59170 4.67196 4.69491 4.73496 4.78574 4.88733 4.93647 4.97114 5.03345 5.07291 5.23610 5.26383 5.35805 5.44179 5.50687 5.57360 5.59274 5.68708 5.77092 5.97267 6.07953 6.40428 6.80523 6.83862 6.90407 7.37451 8.91606 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.007775 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.013724 B = 3600.462967 C = 4172.679138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.170 3.830 4 H 0.089 0.911 5 O -0.564 6.564 6 C -0.111 4.111 7 C -0.109 4.109 8 C -0.122 4.122 9 C -0.115 4.115 10 C -0.169 4.169 11 C 0.084 3.916 12 N -0.503 5.503 13 C 0.075 3.925 14 C -0.138 4.138 15 C 0.187 3.813 16 C -0.495 4.495 17 H 0.060 0.940 18 C 0.014 3.986 19 N -0.942 5.942 20 Si 0.927 3.073 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.259 1.259 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.383 0.617 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.108 0.892 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.013 0.987 40 H -0.012 1.012 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 6.011 -15.080 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.111 3.889 4 H 0.107 0.893 5 O -0.371 6.371 6 C -0.113 4.113 7 C -0.128 4.128 8 C -0.140 4.140 9 C -0.133 4.133 10 C -0.190 4.190 11 C -0.010 4.010 12 N -0.225 5.225 13 C -0.051 4.051 14 C -0.196 4.196 15 C 0.061 3.939 16 C -0.533 4.533 17 H 0.079 0.921 18 C -0.183 4.183 19 N -0.583 5.583 20 Si 0.753 3.247 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.183 1.183 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.233 0.767 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.126 0.874 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.005 0.995 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.950 6.279 -14.656 17.393 hybrid contribution 1.486 -1.201 0.921 2.121 sum 8.436 5.078 -13.735 16.900 Atomic orbital electron populations 1.21610 0.94923 1.01417 1.01628 1.22018 0.97044 0.96382 1.02129 1.20354 0.88718 0.93100 0.86753 0.89305 1.86593 1.76985 1.57578 1.15984 1.20621 0.97169 1.01035 0.92449 1.21149 0.94023 0.99517 0.98071 1.21446 0.94708 0.99807 0.98041 1.21315 1.00578 0.99312 0.92125 1.21853 0.94352 1.03069 0.99692 1.19050 0.90489 0.99605 0.91872 1.59560 1.53777 1.03178 1.05971 1.21939 0.97364 0.91479 0.94330 1.21866 0.97632 1.01192 0.98871 1.19913 0.94511 0.87592 0.91869 1.21280 1.01020 1.13476 1.17541 0.92150 1.25612 0.98777 0.98460 0.95452 1.70010 1.32513 1.31130 1.24693 0.86007 0.80831 0.78673 0.79224 1.19554 1.20908 1.18310 0.92704 0.94510 0.91113 0.90569 0.93175 0.76669 0.82969 0.82665 0.83989 0.87364 0.95400 0.91105 0.93911 0.92473 0.91864 0.96851 0.99457 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.81 71.98 0.71 -3.46 16 2 C -0.14 -4.35 5.59 30.60 0.17 -4.18 16 3 C 0.17 5.29 2.90 29.85 0.09 5.38 16 4 H 0.09 3.35 7.63 -2.39 -0.02 3.33 16 5 O -0.56 -14.58 12.53 -148.98 -1.87 -16.45 16 6 C -0.11 -3.43 5.08 -19.74 -0.10 -3.54 16 7 C -0.11 -2.54 9.30 22.25 0.21 -2.34 16 8 C -0.12 -2.58 10.04 22.29 0.22 -2.36 16 9 C -0.11 -2.82 10.04 22.25 0.22 -2.60 16 10 C -0.17 -5.41 8.85 22.40 0.20 -5.21 16 11 C 0.08 2.99 4.45 38.22 0.17 3.16 16 12 N -0.50 -20.68 3.47 -699.60 -2.43 -23.11 16 13 C 0.08 2.85 5.26 86.30 0.45 3.30 16 14 C -0.14 -5.54 8.64 71.98 0.62 -4.92 16 15 C 0.19 8.88 3.29 85.55 0.28 9.16 16 16 C -0.49 -27.41 7.42 25.60 0.19 -27.22 16 17 H 0.06 3.67 6.44 -2.91 -0.02 3.65 16 18 C 0.01 0.82 5.47 84.66 0.46 1.28 16 19 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 20 Si 0.93 44.03 27.36 68.60 1.88 45.91 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.26 -11.76 6.70 99.48 0.67 -11.10 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.24 8.14 -2.38 -0.02 1.23 16 26 H 0.07 1.83 7.82 -2.39 -0.02 1.81 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.38 6.46 7.33 -74.06 -0.54 5.91 16 30 H 0.15 2.43 6.41 -2.91 -0.02 2.41 16 31 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.11 3.55 7.64 -2.91 -0.02 3.53 16 34 H 0.03 1.04 7.58 -2.39 -0.02 1.02 16 35 H 0.07 2.42 7.96 -2.39 -0.02 2.40 16 36 H 0.04 1.79 7.92 -2.39 -0.02 1.77 16 37 H 0.06 2.73 5.73 -2.39 -0.01 2.71 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.01 0.67 7.33 -2.39 -0.02 0.65 16 40 H -0.01 -0.58 6.67 -2.39 -0.02 -0.60 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -65.49 325.97 2.20 -63.29 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.42 Total: 21.27 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 3.90 Total: -33.53 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -2.13 Total: -80.48 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -1.87 Total: -16.45 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Total: -65.49 2.20 -63.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123360043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.037 kcal (2) G-P(sol) polarization free energy of solvation -65.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds