Wall clock time and date at job start Mon Mar 30 2020 06:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46860 * 2 1 4 4 H 1.08996 * 109.47173 * 54.99745 * 3 2 1 5 5 O 1.42906 * 109.47021 * 294.99462 * 3 2 1 6 6 C 1.50699 * 109.47259 * 174.99874 * 3 2 1 7 7 C 1.38128 * 120.04099 * 94.99811 * 6 3 2 8 8 C 1.38257 * 120.07340 * 179.97438 * 7 6 3 9 9 C 1.38307 * 120.15306 * 359.97438 * 8 7 6 10 10 C 1.38082 * 120.07681 * 0.02562 * 9 8 7 11 11 C 1.38898 * 120.03684 * 275.23075 * 6 3 2 12 12 N 1.39674 * 120.07202 * 359.97438 * 11 6 3 13 13 C 1.46896 * 111.00066 * 250.47195 * 12 11 6 14 14 C 1.46908 * 110.99852 * 126.52417 * 12 11 6 15 15 H 1.08999 * 109.46702 * 69.79153 * 14 12 11 16 16 C 1.52998 * 109.47315 * 189.79479 * 14 12 11 17 17 C 1.50706 * 109.46679 * 309.79490 * 14 12 11 18 18 H 1.08002 * 120.00091 * 359.97438 * 17 14 12 19 19 C 1.37873 * 119.99551 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99686 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 120.00205 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47277 * 90.00057 * 21 19 17 23 23 H 1.48499 * 109.47103 * 209.99867 * 21 19 17 24 24 H 1.48498 * 109.47165 * 330.00017 * 21 19 17 25 25 H 1.09007 * 109.46895 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47383 * 300.00113 * 1 2 3 27 27 H 1.09002 * 109.47206 * 60.00754 * 1 2 3 28 28 H 1.08992 * 109.47835 * 239.99644 * 2 1 3 29 29 H 1.09002 * 109.47206 * 119.99246 * 2 1 3 30 30 H 0.96693 * 113.99992 * 300.00345 * 5 3 2 31 31 H 1.08001 * 119.95636 * 359.97438 * 7 6 3 32 32 H 1.08007 * 119.92569 * 179.97438 * 8 7 6 33 33 H 1.08009 * 119.96145 * 180.02562 * 9 8 7 34 34 H 1.07992 * 120.04069 * 180.02562 * 10 9 8 35 35 H 1.09006 * 109.46965 * 60.00963 * 13 12 11 36 36 H 1.09005 * 109.47395 * 179.97438 * 13 12 11 37 37 H 1.08992 * 109.47907 * 300.00439 * 13 12 11 38 38 H 1.09004 * 109.46868 * 54.15949 * 16 14 12 39 39 H 1.08995 * 109.47011 * 174.16234 * 16 14 12 40 40 H 1.09003 * 109.46945 * 294.16714 * 16 14 12 41 41 H 0.97005 * 119.99782 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2212 6 6 3.5418 1.4445 0.1239 7 6 4.3290 1.5149 -1.0090 8 6 5.7069 1.5172 -0.8961 9 6 6.3020 1.4496 0.3506 10 6 5.5211 1.3791 1.4872 11 6 4.1362 1.3706 1.3771 12 7 3.3432 1.2949 2.5244 13 6 3.4140 2.5426 3.2965 14 6 3.7229 0.1418 3.3516 15 1 4.7024 0.3198 3.7954 16 6 2.6878 -0.0526 4.4615 17 6 3.7776 -1.0958 2.4933 18 1 3.5524 -1.0321 1.4390 19 6 4.1151 -2.3092 3.0542 20 7 4.1624 -3.3893 2.3053 21 14 4.5053 -2.4192 4.8777 22 1 3.2584 -2.6973 5.6348 23 1 5.4803 -3.5149 5.1101 24 1 5.0872 -1.1328 5.3378 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 2.0141 1.6542 -2.0139 31 1 3.8674 1.5681 -1.9839 32 1 6.3202 1.5719 -1.7835 33 1 7.3787 1.4521 0.4352 34 1 5.9863 1.3267 2.4604 35 1 3.0610 3.3707 2.6818 36 1 2.7872 2.4567 4.1841 37 1 4.4456 2.7265 3.5962 38 1 1.6932 -0.1271 4.0217 39 1 2.9116 -0.9670 5.0109 40 1 2.7212 0.7979 5.1424 41 1 4.4002 -4.2430 2.6998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123402580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:52 Heat of formation + Delta-G solvation = -14.346219 kcal Electronic energy + Delta-G solvation = -21314.865220 eV Core-core repulsion = 18387.995493 eV Total energy + Delta-G solvation = -2926.869727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.76940 -37.17654 -36.11222 -32.80191 -32.29880 -30.66056 -30.33104 -28.83912 -26.03106 -25.18199 -24.20553 -22.15582 -21.45750 -20.36292 -19.45868 -17.05175 -16.81067 -15.83002 -15.48074 -14.95054 -14.50287 -14.21341 -14.10533 -13.60726 -13.56277 -13.11507 -12.60596 -12.50079 -12.44300 -12.23283 -11.90116 -11.81115 -11.46543 -11.29763 -11.13241 -10.90247 -10.68392 -10.53694 -10.40176 -10.30692 -10.08302 -9.59802 -9.54465 -9.03466 -8.62483 -8.21343 -7.95901 -7.55320 -6.10584 -4.09366 1.93382 1.96432 3.21400 3.31324 3.33992 4.28231 4.34676 4.62025 4.88947 5.21108 5.22686 5.37938 5.52231 5.62643 5.68861 5.73272 5.84920 5.87284 6.01437 6.10144 6.17504 6.23383 6.26713 6.32169 6.33801 6.43194 6.50076 6.52046 6.64838 6.70344 6.74487 6.98013 7.01358 7.09571 7.11658 7.30795 7.35996 7.58838 7.77328 8.00906 8.22328 8.55431 8.97915 9.50382 11.01378 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.008704 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.560425 B = 3216.103202 C = 3601.058303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.156 4.156 3 C 0.162 3.838 4 H 0.112 0.888 5 O -0.568 6.568 6 C -0.101 4.101 7 C -0.114 4.114 8 C -0.135 4.135 9 C -0.115 4.115 10 C -0.134 4.134 11 C 0.151 3.849 12 N -0.501 5.501 13 C 0.026 3.974 14 C 0.184 3.816 15 H 0.002 0.998 16 C -0.145 4.145 17 C -0.508 4.508 18 H 0.092 0.908 19 C 0.074 3.926 20 N -0.894 5.894 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.298 1.298 24 H -0.270 1.270 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.111 0.889 30 H 0.366 0.634 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.021 0.979 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.028 0.972 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 9.689 -3.124 10.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.193 4.193 3 C 0.103 3.897 4 H 0.130 0.870 5 O -0.373 6.373 6 C -0.103 4.103 7 C -0.133 4.133 8 C -0.153 4.153 9 C -0.134 4.134 10 C -0.154 4.154 11 C 0.056 3.944 12 N -0.222 5.222 13 C -0.121 4.121 14 C 0.078 3.922 15 H 0.019 0.981 16 C -0.202 4.202 17 C -0.546 4.546 18 H 0.110 0.890 19 C -0.128 4.128 20 N -0.532 5.532 21 Si 0.712 3.288 22 H -0.205 1.205 23 H -0.225 1.225 24 H -0.195 1.195 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.213 0.787 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.777 9.818 -2.823 10.369 hybrid contribution 1.545 -0.753 1.032 2.005 sum -0.232 9.064 -1.791 9.243 Atomic orbital electron populations 1.21643 0.96116 1.00846 1.01148 1.22320 0.95766 0.96339 1.04898 1.20663 0.88995 0.93746 0.86255 0.87036 1.86557 1.76928 1.57798 1.16043 1.20345 0.96595 1.01111 0.92234 1.20626 0.93629 1.01635 0.97387 1.20874 0.94580 1.02868 0.97017 1.20878 0.99067 1.00803 0.92635 1.21525 0.94557 1.00752 0.98544 1.18308 0.89629 0.95423 0.91009 1.59689 1.53173 1.03308 1.06037 1.22409 0.99587 0.91950 0.98150 1.19809 0.92267 0.88997 0.91107 0.98079 1.22173 1.01573 0.98569 0.97915 1.21047 1.46641 0.89741 0.97201 0.89048 1.24884 0.94917 0.95723 0.97304 1.69875 1.48458 0.99250 1.35598 0.86961 0.77705 0.77382 0.86728 1.20530 1.22545 1.19524 0.93262 0.93013 0.93336 0.92860 0.87121 0.78728 0.86802 0.86927 0.87022 0.86856 0.92242 0.91184 0.96092 0.91934 0.93683 0.95322 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.81 37.16 0.36 -1.86 16 2 C -0.16 -2.82 5.54 -26.73 -0.15 -2.97 16 3 C 0.16 2.78 2.90 -27.88 -0.08 2.70 16 4 H 0.11 2.02 7.63 -51.93 -0.40 1.62 16 5 O -0.57 -8.77 12.53 -35.23 -0.44 -9.22 16 6 C -0.10 -1.86 4.96 -104.42 -0.52 -2.38 16 7 C -0.11 -1.88 9.30 -39.61 -0.37 -2.25 16 8 C -0.14 -2.17 10.04 -39.55 -0.40 -2.56 16 9 C -0.12 -1.97 10.04 -39.61 -0.40 -2.37 16 10 C -0.13 -2.58 8.52 -39.38 -0.34 -2.91 16 11 C 0.15 2.97 3.15 -83.78 -0.26 2.70 16 12 N -0.50 -9.86 3.66 -172.67 -0.63 -10.49 16 13 C 0.03 0.43 9.23 60.06 0.55 0.98 16 14 C 0.18 4.14 1.21 -68.86 -0.08 4.06 16 15 H 0.00 0.04 6.26 -51.93 -0.33 -0.28 16 16 C -0.14 -3.03 8.46 37.16 0.31 -2.72 16 17 C -0.51 -13.38 7.81 -34.44 -0.27 -13.65 16 18 H 0.09 2.60 5.29 -52.49 -0.28 2.32 16 19 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 20 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 21 Si 0.88 21.36 24.42 -169.99 -4.15 17.21 16 22 H -0.28 -6.59 6.82 56.52 0.39 -6.20 16 23 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 25 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.70 7.82 -51.93 -0.41 0.30 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.11 2.43 5.60 -51.93 -0.29 2.14 16 30 H 0.37 4.51 7.33 45.56 0.33 4.85 16 31 H 0.11 1.53 6.41 -52.49 -0.34 1.20 16 32 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 33 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.11 2.19 7.15 -52.49 -0.38 1.81 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.07 6.42 -51.93 -0.33 0.73 16 37 H 0.02 0.33 7.73 -51.93 -0.40 -0.07 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.04 1.00 3.22 -51.93 -0.17 0.83 16 40 H 0.03 0.51 6.75 -51.93 -0.35 0.16 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -29.29 314.17 -6.91 -36.19 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.47 Total: 8.45 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -1.72 Total: -21.27 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.14 Total: -36.11 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.44 Total: -9.22 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.15 Total: 17.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.29 -6.91 -36.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123402580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.847 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds