Wall clock time and date at job start Mon Mar 30 2020 06:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46860 * 2 1 4 4 H 1.08996 * 109.47173 * 54.99745 * 3 2 1 5 5 O 1.42906 * 109.47021 * 294.99462 * 3 2 1 6 6 C 1.50699 * 109.47259 * 174.99874 * 3 2 1 7 7 C 1.38128 * 120.04099 * 94.99811 * 6 3 2 8 8 C 1.38257 * 120.07340 * 179.97438 * 7 6 3 9 9 C 1.38307 * 120.15306 * 359.97438 * 8 7 6 10 10 C 1.38082 * 120.07681 * 0.02562 * 9 8 7 11 11 C 1.38898 * 120.03684 * 275.23075 * 6 3 2 12 12 N 1.39674 * 120.07202 * 359.97438 * 11 6 3 13 13 C 1.46896 * 111.00066 * 250.47195 * 12 11 6 14 14 C 1.46908 * 110.99852 * 126.52417 * 12 11 6 15 15 H 1.08999 * 109.46702 * 69.79153 * 14 12 11 16 16 C 1.52998 * 109.47315 * 189.79479 * 14 12 11 17 17 C 1.50706 * 109.46679 * 309.79490 * 14 12 11 18 18 H 1.08002 * 120.00091 * 359.97438 * 17 14 12 19 19 C 1.37873 * 119.99551 * 179.97438 * 17 14 12 20 20 N 1.31516 * 119.99686 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 120.00205 * 359.97438 * 19 17 14 22 22 H 1.48496 * 109.47277 * 90.00057 * 21 19 17 23 23 H 1.48499 * 109.47103 * 209.99867 * 21 19 17 24 24 H 1.48498 * 109.47165 * 330.00017 * 21 19 17 25 25 H 1.09007 * 109.46895 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47383 * 300.00113 * 1 2 3 27 27 H 1.09002 * 109.47206 * 60.00754 * 1 2 3 28 28 H 1.08992 * 109.47835 * 239.99644 * 2 1 3 29 29 H 1.09002 * 109.47206 * 119.99246 * 2 1 3 30 30 H 0.96693 * 113.99992 * 300.00345 * 5 3 2 31 31 H 1.08001 * 119.95636 * 359.97438 * 7 6 3 32 32 H 1.08007 * 119.92569 * 179.97438 * 8 7 6 33 33 H 1.08009 * 119.96145 * 180.02562 * 9 8 7 34 34 H 1.07992 * 120.04069 * 180.02562 * 10 9 8 35 35 H 1.09006 * 109.46965 * 60.00963 * 13 12 11 36 36 H 1.09005 * 109.47395 * 179.97438 * 13 12 11 37 37 H 1.08992 * 109.47907 * 300.00439 * 13 12 11 38 38 H 1.09004 * 109.46868 * 54.15949 * 16 14 12 39 39 H 1.08995 * 109.47011 * 174.16234 * 16 14 12 40 40 H 1.09003 * 109.46945 * 294.16714 * 16 14 12 41 41 H 0.97005 * 119.99782 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2212 6 6 3.5418 1.4445 0.1239 7 6 4.3290 1.5149 -1.0090 8 6 5.7069 1.5172 -0.8961 9 6 6.3020 1.4496 0.3506 10 6 5.5211 1.3791 1.4872 11 6 4.1362 1.3706 1.3771 12 7 3.3432 1.2949 2.5244 13 6 3.4140 2.5426 3.2965 14 6 3.7229 0.1418 3.3516 15 1 4.7024 0.3198 3.7954 16 6 2.6878 -0.0526 4.4615 17 6 3.7776 -1.0958 2.4933 18 1 3.5524 -1.0321 1.4390 19 6 4.1151 -2.3092 3.0542 20 7 4.1624 -3.3893 2.3053 21 14 4.5053 -2.4192 4.8777 22 1 3.2584 -2.6973 5.6348 23 1 5.4803 -3.5149 5.1101 24 1 5.0872 -1.1328 5.3378 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8898 29 1 1.8933 -0.5137 0.8901 30 1 2.0141 1.6542 -2.0139 31 1 3.8674 1.5681 -1.9839 32 1 6.3202 1.5719 -1.7835 33 1 7.3787 1.4521 0.4352 34 1 5.9863 1.3267 2.4604 35 1 3.0610 3.3707 2.6818 36 1 2.7872 2.4567 4.1841 37 1 4.4456 2.7265 3.5962 38 1 1.6932 -0.1271 4.0217 39 1 2.9116 -0.9670 5.0109 40 1 2.7212 0.7979 5.1424 41 1 4.4002 -4.2430 2.6998 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123402580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:52 Heat of formation + Delta-G solvation = -33.764526 kcal Electronic energy + Delta-G solvation = -21315.707261 eV Core-core repulsion = 18387.995493 eV Total energy + Delta-G solvation = -2927.711768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17762 -38.59353 -37.52549 -34.74193 -33.64331 -32.34055 -31.72567 -30.28999 -27.58875 -26.65354 -25.86645 -23.64642 -22.88685 -21.73809 -21.08142 -18.79092 -18.39708 -17.34505 -16.93968 -16.35768 -16.03490 -15.93317 -15.53572 -15.03584 -14.98951 -14.74467 -14.31607 -13.96195 -13.87347 -13.77126 -13.40644 -13.11484 -12.86924 -12.69336 -12.61778 -12.57642 -12.35515 -12.16182 -11.98996 -11.74257 -11.59710 -11.39853 -11.00075 -10.83885 -10.70654 -9.58475 -9.39892 -9.04054 -8.22020 -6.22577 0.56567 0.59268 1.28532 1.33844 1.41928 2.33058 2.90816 3.10769 3.16798 3.63269 3.88574 4.09134 4.22730 4.26878 4.32717 4.36747 4.49548 4.55740 4.57586 4.66773 4.73816 4.77361 4.80541 4.87543 4.93726 4.96524 4.99899 5.08568 5.16956 5.33051 5.37952 5.48275 5.55194 5.61294 5.68361 5.69201 5.83221 6.02395 6.09550 6.57431 6.71157 6.85887 6.91256 7.40270 8.92947 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.008704 C = 0.007774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.560425 B = 3216.103202 C = 3601.058303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.150 4.150 3 C 0.177 3.823 4 H 0.102 0.898 5 O -0.565 6.565 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.134 4.134 9 C -0.123 4.123 10 C -0.159 4.159 11 C 0.126 3.874 12 N -0.503 5.503 13 C 0.026 3.974 14 C 0.188 3.812 15 H -0.010 1.010 16 C -0.142 4.142 17 C -0.493 4.493 18 H 0.063 0.937 19 C 0.018 3.982 20 N -0.943 5.943 21 Si 0.935 3.065 22 H -0.268 1.268 23 H -0.305 1.305 24 H -0.255 1.255 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.381 0.619 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.022 0.978 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 11.446 -3.382 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.188 4.188 3 C 0.118 3.882 4 H 0.120 0.880 5 O -0.373 6.373 6 C -0.120 4.120 7 C -0.136 4.136 8 C -0.152 4.152 9 C -0.141 4.141 10 C -0.180 4.180 11 C 0.032 3.968 12 N -0.224 5.224 13 C -0.121 4.121 14 C 0.082 3.918 15 H 0.008 0.992 16 C -0.199 4.199 17 C -0.532 4.532 18 H 0.081 0.919 19 C -0.179 4.179 20 N -0.584 5.584 21 Si 0.764 3.236 22 H -0.194 1.194 23 H -0.233 1.233 24 H -0.179 1.179 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.151 0.849 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.963 11.611 -3.082 12.172 hybrid contribution 1.615 -1.219 0.957 2.239 sum -0.347 10.392 -2.125 10.612 Atomic orbital electron populations 1.21590 0.94362 1.01109 1.02038 1.22181 0.97268 0.96685 1.02626 1.20345 0.88344 0.92711 0.86772 0.88045 1.86532 1.76953 1.57671 1.16123 1.20603 0.97413 1.01561 0.92461 1.21071 0.94027 1.00304 0.98204 1.21309 0.94906 1.01239 0.97772 1.21223 1.00246 1.00084 0.92581 1.21621 0.94872 1.02454 0.99007 1.18534 0.89981 0.96748 0.91538 1.59633 1.53124 1.03608 1.06042 1.22497 1.00092 0.90898 0.98594 1.19616 0.92304 0.88690 0.91221 0.99242 1.22085 1.00708 0.99373 0.97748 1.21272 1.44198 0.91149 0.96547 0.91942 1.25596 0.95502 0.95563 1.01267 1.70018 1.51123 0.99841 1.37464 0.86076 0.77712 0.77587 0.82251 1.19411 1.23335 1.17946 0.93354 0.92913 0.91553 0.93169 0.91303 0.76966 0.83685 0.83502 0.84857 0.87898 0.90828 0.89800 0.95929 0.92066 0.94847 0.92004 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.81 71.98 0.71 -3.41 16 2 C -0.15 -5.42 5.54 30.59 0.17 -5.25 16 3 C 0.18 5.91 2.90 29.85 0.09 6.00 16 4 H 0.10 3.59 7.63 -2.39 -0.02 3.57 16 5 O -0.57 -16.12 12.53 -148.98 -1.87 -17.98 16 6 C -0.12 -4.26 4.96 -19.73 -0.10 -4.36 16 7 C -0.12 -3.63 9.30 22.25 0.21 -3.42 16 8 C -0.13 -3.99 10.04 22.29 0.22 -3.76 16 9 C -0.12 -4.06 10.04 22.25 0.22 -3.83 16 10 C -0.16 -6.14 8.52 22.40 0.19 -5.95 16 11 C 0.13 4.95 3.15 38.22 0.12 5.07 16 12 N -0.50 -19.57 3.66 -700.20 -2.56 -22.13 16 13 C 0.03 0.80 9.23 127.69 1.18 1.98 16 14 C 0.19 8.42 1.21 44.17 0.05 8.47 16 15 H -0.01 -0.46 6.26 -2.39 -0.01 -0.48 16 16 C -0.14 -5.72 8.46 71.98 0.61 -5.11 16 17 C -0.49 -26.54 7.81 25.60 0.20 -26.34 16 18 H 0.06 3.70 5.29 -2.91 -0.02 3.68 16 19 C 0.02 1.01 5.45 84.65 0.46 1.47 16 20 N -0.94 -57.60 13.96 21.45 0.30 -57.30 16 21 Si 0.93 44.33 24.42 68.60 1.68 46.00 16 22 H -0.27 -12.13 6.82 99.48 0.68 -11.46 16 23 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 24 H -0.26 -11.34 6.53 99.48 0.65 -10.69 16 25 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.79 7.82 -2.39 -0.02 1.77 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 3.12 5.60 -2.39 -0.01 3.11 16 30 H 0.38 8.27 7.33 -74.06 -0.54 7.73 16 31 H 0.15 3.42 6.41 -2.91 -0.02 3.40 16 32 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 33 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 34 H 0.10 4.04 7.15 -2.91 -0.02 4.02 16 35 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.08 2.35 6.42 -2.38 -0.02 2.34 16 37 H 0.02 0.69 7.73 -2.39 -0.02 0.67 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.03 1.42 3.22 -2.39 -0.01 1.41 16 40 H 0.06 2.06 6.75 -2.39 -0.02 2.05 16 41 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -64.35 314.17 2.28 -62.07 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.40 Total: 27.79 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 4.33 Total: -38.45 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.26 Total: -79.43 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -1.87 Total: -17.98 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.68 Total: 46.00 kcal Total: -64.35 2.28 -62.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123402580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.303 kcal (2) G-P(sol) polarization free energy of solvation -64.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds