Wall clock time and date at job start Mon Mar 30 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 H 1.09009 * 109.47205 * 305.00029 * 3 2 1 5 5 O 1.42899 * 109.47414 * 65.00005 * 3 2 1 6 6 C 1.50701 * 109.47089 * 185.00163 * 3 2 1 7 7 C 1.38123 * 120.03727 * 265.21100 * 6 3 2 8 8 C 1.38257 * 120.07219 * 180.27356 * 7 6 3 9 9 C 1.38310 * 120.15456 * 359.74637 * 8 7 6 10 10 C 1.38080 * 120.07219 * 0.02562 * 9 8 7 11 11 C 1.38893 * 120.03660 * 84.99710 * 6 3 2 12 12 N 1.39673 * 120.07454 * 0.02562 * 11 6 3 13 13 C 1.46901 * 111.00117 * 243.67276 * 12 11 6 14 14 C 1.46904 * 111.00068 * 119.72347 * 12 11 6 15 15 H 1.09000 * 109.47038 * 59.99329 * 14 12 11 16 16 C 1.53005 * 109.46661 * 299.99799 * 14 12 11 17 17 C 1.50701 * 109.47195 * 180.02562 * 14 12 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 12 19 19 C 1.37871 * 119.99694 * 180.27796 * 17 14 12 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48494 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47301 * 119.99669 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99516 * 21 19 17 25 25 H 1.09004 * 109.46936 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47227 * 299.99627 * 1 2 3 27 27 H 1.08998 * 109.47217 * 60.00026 * 1 2 3 28 28 H 1.09001 * 109.46830 * 240.00034 * 2 1 3 29 29 H 1.08998 * 109.47217 * 119.99974 * 2 1 3 30 30 H 0.96696 * 113.99937 * 59.99787 * 5 3 2 31 31 H 1.07998 * 119.96446 * 0.02562 * 7 6 3 32 32 H 1.08010 * 119.92301 * 179.72289 * 8 7 6 33 33 H 1.07993 * 119.96411 * 180.02562 * 9 8 7 34 34 H 1.07997 * 120.03982 * 179.97438 * 10 9 8 35 35 H 1.08995 * 109.47220 * 296.05125 * 13 12 11 36 36 H 1.09003 * 109.46694 * 56.05127 * 13 12 11 37 37 H 1.08998 * 109.47259 * 176.04471 * 13 12 11 38 38 H 1.09004 * 109.46658 * 179.97438 * 16 14 12 39 39 H 1.08995 * 109.47438 * 299.99503 * 16 14 12 40 40 H 1.08996 * 109.47069 * 60.00362 * 16 14 12 41 41 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 3.5419 1.4444 -0.1239 7 6 4.3290 1.5104 1.0092 8 6 5.7069 1.5178 0.8961 9 6 6.3021 1.4540 -0.3508 10 6 5.5212 1.3831 -1.4873 11 6 4.1362 1.3752 -1.3773 12 7 3.3433 1.3044 -2.5250 13 6 3.5520 0.0335 -3.2315 14 6 3.5975 2.4475 -3.4119 15 1 4.6457 2.4494 -3.7108 16 6 3.2756 3.7479 -2.6727 17 6 2.7255 2.3372 -4.6361 18 1 2.0504 1.5012 -4.7446 19 6 2.7943 3.3001 -5.6204 20 7 3.6167 4.3179 -5.4884 21 14 1.7192 3.1592 -7.1415 22 1 0.8890 1.9316 -7.0489 23 1 0.8354 4.3490 -7.2350 24 1 2.5787 3.0849 -8.3501 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0141 1.6543 2.0138 31 1 3.8676 1.5603 1.9844 32 1 6.3201 1.5740 1.7835 33 1 7.3786 1.4596 -0.4355 34 1 5.9864 1.3336 -2.4607 35 1 4.5815 -0.0208 -3.5852 36 1 3.3570 -0.7962 -2.5519 37 1 2.8721 -0.0257 -4.0814 38 1 3.4646 4.5962 -3.3306 39 1 2.2274 3.7461 -2.3738 40 1 3.9059 3.8280 -1.7871 41 1 3.6653 4.9952 -6.1811 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123403304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:00 Heat of formation + Delta-G solvation = -24.430017 kcal Electronic energy + Delta-G solvation = -20950.847001 eV Core-core repulsion = 18023.540008 eV Total energy + Delta-G solvation = -2927.306993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85900 -37.21344 -36.08730 -32.96186 -32.46581 -30.65222 -29.64544 -28.96110 -25.84554 -25.16912 -24.17352 -22.21200 -21.74958 -20.53758 -19.51503 -17.08730 -16.37856 -15.61585 -15.53282 -15.15659 -14.80750 -14.25580 -13.97987 -13.83515 -13.55510 -12.93200 -12.68205 -12.47571 -12.33109 -11.99655 -11.88536 -11.59322 -11.50844 -11.11398 -11.05647 -10.78419 -10.70862 -10.62773 -10.47524 -10.19059 -10.09957 -10.03142 -9.74907 -8.97820 -8.48333 -8.42023 -8.03616 -7.40310 -6.04991 -4.10306 1.72734 1.75440 3.27446 3.35730 3.39240 4.09192 4.37109 4.73518 4.83021 4.97557 5.20762 5.27339 5.32239 5.38696 5.42216 5.56846 5.81742 5.85427 5.94661 6.03578 6.07188 6.18733 6.23278 6.24064 6.39958 6.50648 6.52254 6.68425 6.77967 6.83940 6.87538 7.03241 7.05516 7.09388 7.32165 7.45882 7.76436 7.81844 7.90186 8.07525 8.27621 8.60867 8.95202 9.54922 11.01776 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.006973 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.513299 B = 4014.606379 C = 4739.944711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.155 3.845 4 H 0.126 0.874 5 O -0.560 6.560 6 C -0.103 4.103 7 C -0.115 4.115 8 C -0.137 4.137 9 C -0.115 4.115 10 C -0.149 4.149 11 C 0.131 3.869 12 N -0.510 5.510 13 C 0.044 3.956 14 C 0.218 3.782 15 H 0.004 0.996 16 C -0.130 4.130 17 C -0.506 4.506 18 H 0.065 0.935 19 C 0.060 3.940 20 N -0.891 5.891 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.362 0.638 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.017 0.983 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.033 0.967 40 H 0.007 0.993 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 -7.778 11.412 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.097 3.903 4 H 0.144 0.856 5 O -0.365 6.365 6 C -0.104 4.104 7 C -0.133 4.133 8 C -0.155 4.155 9 C -0.134 4.134 10 C -0.169 4.169 11 C 0.037 3.963 12 N -0.232 5.232 13 C -0.103 4.103 14 C 0.114 3.886 15 H 0.021 0.979 16 C -0.189 4.189 17 C -0.545 4.545 18 H 0.084 0.916 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.212 1.212 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.209 0.791 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.036 0.964 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.026 0.974 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.022 -7.190 10.997 13.139 hybrid contribution 0.850 -0.326 -0.821 1.226 sum 0.871 -7.517 10.176 12.681 Atomic orbital electron populations 1.21691 0.95372 1.00857 1.02398 1.22110 0.96575 0.96953 1.02305 1.20799 0.89141 0.93213 0.87174 0.85622 1.86659 1.76609 1.57518 1.15665 1.20439 0.96670 1.01031 0.92289 1.20691 0.93637 1.01494 0.97525 1.20925 0.94597 1.02885 0.97120 1.20959 0.99245 1.00637 0.92585 1.21796 0.94885 1.01474 0.98784 1.18863 0.89836 0.95495 0.92153 1.59951 1.52562 1.04536 1.06192 1.22221 0.99798 0.89857 0.98402 1.19357 0.95355 0.84725 0.89132 0.97885 1.21781 0.98390 1.01170 0.97523 1.21161 1.22628 1.08766 1.01941 0.91641 1.24926 0.95592 0.95213 0.98416 1.69906 1.37121 1.11888 1.34070 0.86462 0.80308 0.78111 0.82651 1.19705 1.20989 1.21169 0.93383 0.92611 0.92198 0.90451 0.92775 0.79107 0.86641 0.86745 0.86819 0.86294 0.96406 0.93756 0.89964 0.89611 0.94736 0.97368 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.81 37.16 0.36 -1.52 16 2 C -0.14 -1.96 5.60 -26.73 -0.15 -2.11 16 3 C 0.16 2.51 2.90 -27.88 -0.08 2.43 16 4 H 0.13 2.46 7.63 -51.92 -0.40 2.06 16 5 O -0.56 -8.36 12.53 -35.23 -0.44 -8.81 16 6 C -0.10 -1.74 5.08 -104.42 -0.53 -2.27 16 7 C -0.11 -1.67 9.30 -39.62 -0.37 -2.04 16 8 C -0.14 -1.93 10.04 -39.55 -0.40 -2.33 16 9 C -0.12 -1.78 10.04 -39.61 -0.40 -2.17 16 10 C -0.15 -2.71 8.62 -39.38 -0.34 -3.05 16 11 C 0.13 2.49 3.28 -83.79 -0.27 2.22 16 12 N -0.51 -10.62 3.65 -172.67 -0.63 -11.26 16 13 C 0.04 0.83 8.97 60.07 0.54 1.37 16 14 C 0.22 5.40 1.84 -68.86 -0.13 5.28 16 15 H 0.00 0.10 7.12 -51.93 -0.37 -0.27 16 16 C -0.13 -3.27 8.85 37.16 0.33 -2.94 16 17 C -0.51 -13.47 7.92 -34.44 -0.27 -13.74 16 18 H 0.07 1.72 6.40 -52.49 -0.34 1.38 16 19 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 20 N -0.89 -25.18 11.33 55.43 0.63 -24.56 16 21 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.69 7.82 -51.93 -0.41 0.29 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.16 7.51 -51.93 -0.39 0.77 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.36 3.94 7.33 45.56 0.33 4.27 16 31 H 0.12 1.33 6.41 -52.49 -0.34 1.00 16 32 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.12 2.24 7.05 -52.49 -0.37 1.87 16 35 H 0.02 0.33 7.48 -51.93 -0.39 -0.06 16 36 H 0.04 0.73 7.49 -51.93 -0.39 0.34 16 37 H 0.08 1.63 6.24 -51.93 -0.32 1.31 16 38 H 0.09 2.34 6.08 -51.93 -0.32 2.03 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.01 0.18 7.22 -51.93 -0.37 -0.20 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -28.79 324.68 -8.11 -36.89 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.73 Total: 6.17 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -1.80 Total: -19.34 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.00 Total: -35.81 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.44 Total: -8.81 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.79 -8.11 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123403304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.463 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds