Wall clock time and date at job start Mon Mar 30 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 H 1.09009 * 109.47205 * 305.00029 * 3 2 1 5 5 O 1.42899 * 109.47414 * 65.00005 * 3 2 1 6 6 C 1.50701 * 109.47089 * 185.00163 * 3 2 1 7 7 C 1.38123 * 120.03727 * 265.21100 * 6 3 2 8 8 C 1.38257 * 120.07219 * 180.27356 * 7 6 3 9 9 C 1.38310 * 120.15456 * 359.74637 * 8 7 6 10 10 C 1.38080 * 120.07219 * 0.02562 * 9 8 7 11 11 C 1.38893 * 120.03660 * 84.99710 * 6 3 2 12 12 N 1.39673 * 120.07454 * 0.02562 * 11 6 3 13 13 C 1.46901 * 111.00117 * 243.67276 * 12 11 6 14 14 C 1.46904 * 111.00068 * 119.72347 * 12 11 6 15 15 H 1.09000 * 109.47038 * 59.99329 * 14 12 11 16 16 C 1.53005 * 109.46661 * 299.99799 * 14 12 11 17 17 C 1.50701 * 109.47195 * 180.02562 * 14 12 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 12 19 19 C 1.37871 * 119.99694 * 180.27796 * 17 14 12 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48494 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47301 * 119.99669 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99516 * 21 19 17 25 25 H 1.09004 * 109.46936 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47227 * 299.99627 * 1 2 3 27 27 H 1.08998 * 109.47217 * 60.00026 * 1 2 3 28 28 H 1.09001 * 109.46830 * 240.00034 * 2 1 3 29 29 H 1.08998 * 109.47217 * 119.99974 * 2 1 3 30 30 H 0.96696 * 113.99937 * 59.99787 * 5 3 2 31 31 H 1.07998 * 119.96446 * 0.02562 * 7 6 3 32 32 H 1.08010 * 119.92301 * 179.72289 * 8 7 6 33 33 H 1.07993 * 119.96411 * 180.02562 * 9 8 7 34 34 H 1.07997 * 120.03982 * 179.97438 * 10 9 8 35 35 H 1.08995 * 109.47220 * 296.05125 * 13 12 11 36 36 H 1.09003 * 109.46694 * 56.05127 * 13 12 11 37 37 H 1.08998 * 109.47259 * 176.04471 * 13 12 11 38 38 H 1.09004 * 109.46658 * 179.97438 * 16 14 12 39 39 H 1.08995 * 109.47438 * 299.99503 * 16 14 12 40 40 H 1.08996 * 109.47069 * 60.00362 * 16 14 12 41 41 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 3.5419 1.4444 -0.1239 7 6 4.3290 1.5104 1.0092 8 6 5.7069 1.5178 0.8961 9 6 6.3021 1.4540 -0.3508 10 6 5.5212 1.3831 -1.4873 11 6 4.1362 1.3752 -1.3773 12 7 3.3433 1.3044 -2.5250 13 6 3.5520 0.0335 -3.2315 14 6 3.5975 2.4475 -3.4119 15 1 4.6457 2.4494 -3.7108 16 6 3.2756 3.7479 -2.6727 17 6 2.7255 2.3372 -4.6361 18 1 2.0504 1.5012 -4.7446 19 6 2.7943 3.3001 -5.6204 20 7 3.6167 4.3179 -5.4884 21 14 1.7192 3.1592 -7.1415 22 1 0.8890 1.9316 -7.0489 23 1 0.8354 4.3490 -7.2350 24 1 2.5787 3.0849 -8.3501 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0141 1.6543 2.0138 31 1 3.8676 1.5603 1.9844 32 1 6.3201 1.5740 1.7835 33 1 7.3786 1.4596 -0.4355 34 1 5.9864 1.3336 -2.4607 35 1 4.5815 -0.0208 -3.5852 36 1 3.3570 -0.7962 -2.5519 37 1 2.8721 -0.0257 -4.0814 38 1 3.4646 4.5962 -3.3306 39 1 2.2274 3.7461 -2.3738 40 1 3.9059 3.8280 -1.7871 41 1 3.6653 4.9952 -6.1811 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123403304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:00 Heat of formation + Delta-G solvation = -41.976276 kcal Electronic energy + Delta-G solvation = -20951.607864 eV Core-core repulsion = 18023.540008 eV Total energy + Delta-G solvation = -2928.067856 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20880 -38.57251 -37.51233 -34.86612 -33.65261 -31.86164 -31.41786 -30.52050 -27.45140 -26.75007 -25.80669 -23.67857 -23.04689 -21.80388 -21.13852 -18.54727 -18.13048 -17.11674 -16.93215 -16.69990 -16.16178 -15.71639 -15.47419 -15.15502 -15.01533 -14.55269 -14.14405 -13.89292 -13.79919 -13.43997 -13.17206 -13.00663 -12.88141 -12.79185 -12.67776 -12.52390 -12.24844 -12.11441 -12.04756 -11.89552 -11.73294 -11.65800 -10.99862 -10.92225 -10.55728 -9.68075 -9.34505 -9.09716 -8.13697 -6.25899 0.47272 0.48357 1.40136 1.42318 1.53799 2.40451 2.84435 3.14375 3.28824 3.62099 3.76723 4.05553 4.17746 4.25824 4.28793 4.36817 4.56049 4.57755 4.67605 4.70754 4.78172 4.85095 4.91954 4.96869 5.00325 5.05448 5.09986 5.15608 5.27050 5.35215 5.42032 5.46672 5.58443 5.61656 5.66276 5.75867 5.83121 6.08561 6.21208 6.26901 6.86678 6.88812 6.94650 7.43393 8.92854 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.006973 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.513299 B = 4014.606379 C = 4739.944711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.084 0.916 5 O -0.567 6.567 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.126 4.126 9 C -0.117 4.117 10 C -0.171 4.171 11 C 0.098 3.902 12 N -0.507 5.507 13 C 0.049 3.951 14 C 0.229 3.771 15 H -0.032 1.032 16 C -0.111 4.111 17 C -0.519 4.519 18 H 0.065 0.935 19 C 0.011 3.989 20 N -0.921 5.921 21 Si 0.961 3.039 22 H -0.264 1.264 23 H -0.282 1.282 24 H -0.281 1.281 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.383 0.617 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.137 0.863 34 H 0.096 0.904 35 H 0.010 0.990 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.027 0.973 40 H 0.012 0.988 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -8.909 13.702 16.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.104 3.896 4 H 0.101 0.899 5 O -0.375 6.375 6 C -0.113 4.113 7 C -0.129 4.129 8 C -0.143 4.143 9 C -0.136 4.136 10 C -0.192 4.192 11 C 0.004 3.996 12 N -0.229 5.229 13 C -0.098 4.098 14 C 0.123 3.877 15 H -0.015 1.015 16 C -0.169 4.169 17 C -0.557 4.557 18 H 0.083 0.917 19 C -0.188 4.188 20 N -0.561 5.561 21 Si 0.787 3.213 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.207 1.207 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.233 0.767 31 H 0.171 0.829 32 H 0.173 0.827 33 H 0.155 0.845 34 H 0.115 0.885 35 H 0.028 0.972 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.031 0.969 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.113 -8.345 13.313 15.712 hybrid contribution 0.960 0.017 -1.397 1.695 sum 0.847 -8.328 11.915 14.562 Atomic orbital electron populations 1.21662 0.94765 1.01856 1.01689 1.22034 0.97034 0.95373 1.02754 1.20475 0.88584 0.93924 0.86580 0.89855 1.86621 1.76817 1.57980 1.16090 1.20608 0.97314 1.01172 0.92230 1.21140 0.93917 0.99672 0.98186 1.21399 0.94874 1.00301 0.97760 1.21264 1.00364 0.99681 0.92274 1.21757 0.94983 1.03349 0.99071 1.18981 0.90152 0.98420 0.92078 1.59806 1.53291 1.03678 1.06115 1.22191 0.98914 0.90170 0.98543 1.19035 0.92839 0.86305 0.89508 1.01471 1.21527 0.97843 1.00537 0.96993 1.21452 1.22670 1.08695 1.02868 0.91719 1.25729 0.96816 0.94898 1.01321 1.70038 1.38500 1.12569 1.35002 0.85455 0.78630 0.78228 0.79022 1.18851 1.20787 1.20733 0.91511 0.91963 0.94254 0.91945 0.90221 0.76739 0.82921 0.82742 0.84491 0.88542 0.97157 0.91075 0.91306 0.92161 0.95387 0.96851 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.81 71.98 0.71 -2.75 16 2 C -0.13 -3.49 5.60 30.60 0.17 -3.31 16 3 C 0.16 5.12 2.90 29.85 0.09 5.21 16 4 H 0.08 3.35 7.63 -2.38 -0.02 3.33 16 5 O -0.57 -15.61 12.53 -148.98 -1.87 -17.48 16 6 C -0.11 -3.64 5.08 -19.73 -0.10 -3.74 16 7 C -0.11 -2.82 9.30 22.25 0.21 -2.61 16 8 C -0.13 -3.03 10.04 22.29 0.22 -2.80 16 9 C -0.12 -3.37 10.04 22.25 0.22 -3.15 16 10 C -0.17 -6.30 8.62 22.40 0.19 -6.11 16 11 C 0.10 3.75 3.28 38.22 0.13 3.88 16 12 N -0.51 -21.88 3.65 -700.20 -2.56 -24.44 16 13 C 0.05 1.90 8.97 127.69 1.15 3.05 16 14 C 0.23 11.86 1.84 44.17 0.08 11.94 16 15 H -0.03 -1.87 7.12 -2.39 -0.02 -1.88 16 16 C -0.11 -5.80 8.85 71.98 0.64 -5.16 16 17 C -0.52 -28.54 7.92 25.60 0.20 -28.34 16 18 H 0.06 3.50 6.40 -2.91 -0.02 3.48 16 19 C 0.01 0.61 5.31 84.65 0.45 1.06 16 20 N -0.92 -53.80 11.33 21.45 0.24 -53.56 16 21 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.42 7.82 -2.39 -0.02 1.40 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.81 7.51 -2.39 -0.02 1.79 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.38 6.78 7.33 -74.06 -0.54 6.24 16 31 H 0.15 2.69 6.41 -2.91 -0.02 2.67 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 33 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.10 3.87 7.05 -2.91 -0.02 3.85 16 35 H 0.01 0.40 7.48 -2.39 -0.02 0.38 16 36 H 0.07 2.36 7.49 -2.39 -0.02 2.34 16 37 H 0.07 2.82 6.24 -2.39 -0.01 2.81 16 38 H 0.06 3.44 6.08 -2.38 -0.01 3.43 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.01 0.63 7.22 -2.39 -0.02 0.61 16 41 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -64.56 324.68 2.67 -61.89 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.47 Total: 20.51 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 4.35 Total: -32.85 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -2.31 Total: -78.00 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -1.87 Total: -17.48 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.56 2.67 -61.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123403304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.917 kcal (2) G-P(sol) polarization free energy of solvation -64.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds