Wall clock time and date at job start Mon Mar 30 2020 07:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47238 * 240.00157 * 2 1 3 5 5 C 1.50696 * 109.47496 * 175.00184 * 4 2 1 6 6 C 1.38266 * 119.94508 * 89.99136 * 5 4 2 7 7 C 1.38149 * 120.05411 * 179.70262 * 6 5 4 8 8 C 1.38726 * 119.94477 * 0.28574 * 7 6 5 9 9 O 1.35900 * 120.05752 * 180.02562 * 8 7 6 10 10 C 1.38729 * 119.89044 * 359.97438 * 8 7 6 11 11 C 1.38144 * 119.94142 * 0.02562 * 10 8 7 12 12 N 1.46906 * 109.47155 * 119.99704 * 2 1 3 13 13 C 1.46896 * 110.99705 * 58.95567 * 12 2 1 14 14 C 1.46896 * 111.00209 * 295.00205 * 12 2 1 15 15 C 1.52994 * 109.47472 * 189.99790 * 14 12 2 16 16 C 1.50697 * 109.47494 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99881 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00459 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99916 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46831 * 60.00438 * 20 18 16 22 22 H 1.48493 * 109.47143 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47031 * 300.00434 * 20 18 16 24 24 H 1.09002 * 109.47059 * 300.00131 * 1 2 3 25 25 H 1.08999 * 109.47011 * 59.99784 * 1 2 3 26 26 H 1.08995 * 109.47027 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47463 * 54.99825 * 4 2 1 28 28 H 1.09005 * 109.46959 * 294.99973 * 4 2 1 29 29 H 1.08002 * 119.97497 * 359.97438 * 6 5 4 30 30 H 1.08000 * 120.02723 * 180.30253 * 7 6 5 31 31 H 0.96701 * 114.00536 * 89.99217 * 9 8 7 32 32 H 1.08007 * 120.02953 * 179.97438 * 10 8 7 33 33 H 1.08007 * 119.97030 * 180.02562 * 11 10 8 34 34 H 1.09000 * 109.47495 * 59.99471 * 13 12 2 35 35 H 1.08996 * 109.47372 * 180.02562 * 13 12 2 36 36 H 1.09007 * 109.47337 * 299.99832 * 13 12 2 37 37 H 1.09004 * 109.46818 * 309.99865 * 14 12 2 38 38 H 1.09001 * 109.47361 * 69.99765 * 14 12 2 39 39 H 1.08999 * 109.46735 * 300.00458 * 15 14 12 40 40 H 1.09001 * 109.46848 * 59.99661 * 15 14 12 41 41 H 0.96994 * 120.00163 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 6 4.3282 -1.5824 -0.7148 7 6 5.7052 -1.4905 -0.7769 8 6 6.2990 -0.4232 -1.4348 9 8 7.6534 -0.3308 -1.4978 10 6 5.5079 0.5491 -2.0293 11 6 4.1314 0.4526 -1.9644 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3788 -0.5661 3.6186 16 6 1.9987 0.1848 4.8687 17 1 1.3061 1.0115 4.8124 18 6 2.5353 -0.1835 6.0841 19 7 3.3793 -1.1898 6.1526 20 14 2.0647 0.7479 7.6336 21 1 0.5981 0.6491 7.8442 22 1 2.7733 0.1602 8.7987 23 1 2.4491 2.1750 7.4893 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6054 -0.2617 -2.1369 28 1 1.7517 -1.7715 -1.2056 29 1 3.8654 -2.4130 -0.2025 30 1 6.3189 -2.2490 -0.3139 31 1 8.0420 -0.7663 -2.2687 32 1 5.9678 1.3812 -2.5417 33 1 3.5150 1.2091 -2.4274 34 1 1.8762 -2.6150 0.3648 35 1 1.9053 -2.5655 2.1440 36 1 0.4384 -2.0742 1.2640 37 1 1.9298 1.0870 2.3125 38 1 0.5722 -0.0345 2.5726 39 1 2.0978 -1.6140 3.7241 40 1 3.4553 -0.4925 3.4641 41 1 3.7570 -1.4486 7.0077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126190342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:36 Heat of formation + Delta-G solvation = -25.279223 kcal Electronic energy + Delta-G solvation = -19888.679396 eV Core-core repulsion = 16961.335579 eV Total energy + Delta-G solvation = -2927.343817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.75221 -38.26503 -36.52051 -33.53017 -32.10153 -30.82439 -29.99078 -28.83064 -26.12286 -25.90055 -23.85076 -22.62015 -21.63632 -20.34274 -19.04174 -18.31108 -16.58952 -15.88639 -15.74667 -15.15902 -15.00323 -14.52542 -14.43610 -13.97038 -13.70969 -13.35074 -13.09589 -12.65755 -12.47555 -12.12500 -11.98907 -11.92877 -11.67220 -11.34787 -11.11313 -11.02933 -10.86753 -10.76508 -10.51790 -10.46456 -10.25712 -9.75970 -9.32416 -9.08670 -8.78680 -8.28612 -8.24259 -7.58584 -5.95463 -3.97614 1.40643 1.55690 3.35743 3.40127 3.42407 3.79587 4.30044 4.41218 4.58512 4.92728 4.99639 5.13557 5.19936 5.39530 5.40709 5.48859 5.56113 5.58956 5.69704 5.83662 5.85869 5.92013 6.02293 6.06326 6.11855 6.20052 6.33607 6.37716 6.48096 6.55131 6.59579 6.62563 6.83898 7.00270 7.04456 7.57349 7.64758 7.72612 7.85477 7.96453 8.14295 8.48582 9.09654 9.65696 11.15921 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.004904 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.335893 B = 5708.835237 C = 6683.005519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.083 3.917 3 H 0.078 0.922 4 C -0.075 4.075 5 C -0.069 4.069 6 C -0.073 4.073 7 C -0.142 4.142 8 C 0.091 3.909 9 O -0.501 6.501 10 C -0.149 4.149 11 C -0.107 4.107 12 N -0.529 5.529 13 C 0.017 3.983 14 C 0.064 3.936 15 C 0.029 3.971 16 C -0.521 4.521 17 H 0.052 0.948 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.383 0.617 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.021 0.979 39 H 0.016 0.984 40 H 0.023 0.977 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 -0.794 -19.307 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.026 4.026 3 H 0.097 0.903 4 C -0.112 4.112 5 C -0.069 4.069 6 C -0.091 4.091 7 C -0.161 4.161 8 C 0.047 3.953 9 O -0.310 6.310 10 C -0.167 4.167 11 C -0.125 4.125 12 N -0.252 5.252 13 C -0.131 4.131 14 C -0.063 4.063 15 C -0.008 4.008 16 C -0.560 4.560 17 H 0.070 0.930 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.238 0.762 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.042 0.958 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.722 -0.592 -18.670 18.693 hybrid contribution -0.981 0.339 0.683 1.243 sum -0.259 -0.254 -17.986 17.990 Atomic orbital electron populations 1.22473 0.97978 1.02081 1.01991 1.21702 0.91983 0.98377 0.90574 0.90336 1.20733 0.91322 1.01645 0.97511 1.19721 0.95511 0.94616 0.97022 1.20918 0.92481 0.99050 0.96619 1.21413 0.95502 0.98205 1.00971 1.18455 0.82523 0.94934 0.99356 1.84866 1.17143 1.79303 1.49692 1.21273 0.93973 0.99730 1.01732 1.20846 0.93989 0.97754 0.99954 1.62305 1.58770 1.02059 1.02079 1.22496 0.97382 0.90909 1.02282 1.22315 0.97316 0.97184 0.89480 1.19076 0.96178 0.95804 0.89756 1.21161 1.26570 1.15926 0.92384 0.92973 1.24977 0.95104 0.95166 0.98976 1.69958 1.30464 1.27430 1.25412 0.86682 0.78517 0.80185 0.82745 1.20340 1.21283 1.20258 0.92070 0.92756 0.92382 0.91134 0.90786 0.85532 0.85756 0.76221 0.86063 0.86189 0.92500 0.90485 0.96031 0.92446 0.96122 0.96553 0.95820 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 8.50 37.16 0.32 -2.07 16 2 C 0.08 1.18 2.33 -67.71 -0.16 1.02 16 3 H 0.08 1.18 8.03 -51.92 -0.42 0.77 16 4 C -0.07 -0.89 4.63 -27.89 -0.13 -1.01 16 5 C -0.07 -0.91 4.95 -104.60 -0.52 -1.43 16 6 C -0.07 -1.02 9.30 -39.60 -0.37 -1.39 16 7 C -0.14 -2.00 9.99 -39.43 -0.39 -2.39 16 8 C 0.09 1.24 6.70 -39.22 -0.26 0.98 16 9 O -0.50 -6.15 13.50 -19.42 -0.26 -6.41 16 10 C -0.15 -1.88 9.99 -39.43 -0.39 -2.28 16 11 C -0.11 -1.33 9.69 -39.61 -0.38 -1.72 16 12 N -0.53 -9.32 4.13 -234.89 -0.97 -10.29 16 13 C 0.02 0.28 8.41 60.06 0.51 0.79 16 14 C 0.06 1.36 4.34 -3.83 -0.02 1.34 16 15 C 0.03 0.77 4.90 -27.89 -0.14 0.63 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H 0.06 0.87 6.75 -51.93 -0.35 0.52 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.73 6.38 -51.93 -0.33 0.40 16 27 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.07 0.84 6.12 -51.93 -0.32 0.53 16 29 H 0.13 1.75 6.69 -52.49 -0.35 1.40 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.38 2.59 9.06 45.56 0.41 3.00 16 32 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.06 0.77 5.10 -51.93 -0.26 0.51 16 35 H 0.08 1.43 6.30 -51.93 -0.33 1.10 16 36 H 0.02 0.33 6.28 -51.92 -0.33 0.01 16 37 H 0.06 1.24 8.00 -51.93 -0.42 0.82 16 38 H 0.02 0.43 6.94 -51.93 -0.36 0.07 16 39 H 0.02 0.45 6.47 -51.93 -0.34 0.11 16 40 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 326.81 15.07 4.92 4.92 Total: -1.00 -32.40 326.81 -8.40 -40.80 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.46 Total: 1.80 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -2.35 Total: -21.24 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.23 Total: -36.86 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.26 Total: -6.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.40 -8.40 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126190342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.520 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds