Wall clock time and date at job start Mon Mar 30 2020 07:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47238 * 240.00157 * 2 1 3 5 5 C 1.50696 * 109.47496 * 175.00184 * 4 2 1 6 6 C 1.38266 * 119.94508 * 89.99136 * 5 4 2 7 7 C 1.38149 * 120.05411 * 179.70262 * 6 5 4 8 8 C 1.38726 * 119.94477 * 0.28574 * 7 6 5 9 9 O 1.35900 * 120.05752 * 180.02562 * 8 7 6 10 10 C 1.38729 * 119.89044 * 359.97438 * 8 7 6 11 11 C 1.38144 * 119.94142 * 0.02562 * 10 8 7 12 12 N 1.46906 * 109.47155 * 119.99704 * 2 1 3 13 13 C 1.46896 * 110.99705 * 58.95567 * 12 2 1 14 14 C 1.46896 * 111.00209 * 295.00205 * 12 2 1 15 15 C 1.52994 * 109.47472 * 189.99790 * 14 12 2 16 16 C 1.50697 * 109.47494 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00064 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99881 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00459 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99916 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46831 * 60.00438 * 20 18 16 22 22 H 1.48493 * 109.47143 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47031 * 300.00434 * 20 18 16 24 24 H 1.09002 * 109.47059 * 300.00131 * 1 2 3 25 25 H 1.08999 * 109.47011 * 59.99784 * 1 2 3 26 26 H 1.08995 * 109.47027 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47463 * 54.99825 * 4 2 1 28 28 H 1.09005 * 109.46959 * 294.99973 * 4 2 1 29 29 H 1.08002 * 119.97497 * 359.97438 * 6 5 4 30 30 H 1.08000 * 120.02723 * 180.30253 * 7 6 5 31 31 H 0.96701 * 114.00536 * 89.99217 * 9 8 7 32 32 H 1.08007 * 120.02953 * 179.97438 * 10 8 7 33 33 H 1.08007 * 119.97030 * 180.02562 * 11 10 8 34 34 H 1.09000 * 109.47495 * 59.99471 * 13 12 2 35 35 H 1.08996 * 109.47372 * 180.02562 * 13 12 2 36 36 H 1.09007 * 109.47337 * 299.99832 * 13 12 2 37 37 H 1.09004 * 109.46818 * 309.99865 * 14 12 2 38 38 H 1.09001 * 109.47361 * 69.99765 * 14 12 2 39 39 H 1.08999 * 109.46735 * 300.00458 * 15 14 12 40 40 H 1.09001 * 109.46848 * 59.99661 * 15 14 12 41 41 H 0.96994 * 120.00163 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 6 4.3282 -1.5824 -0.7148 7 6 5.7052 -1.4905 -0.7769 8 6 6.2990 -0.4232 -1.4348 9 8 7.6534 -0.3308 -1.4978 10 6 5.5079 0.5491 -2.0293 11 6 4.1314 0.4526 -1.9644 12 7 2.0197 -0.6925 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3788 -0.5661 3.6186 16 6 1.9987 0.1848 4.8687 17 1 1.3061 1.0115 4.8124 18 6 2.5353 -0.1835 6.0841 19 7 3.3793 -1.1898 6.1526 20 14 2.0647 0.7479 7.6336 21 1 0.5981 0.6491 7.8442 22 1 2.7733 0.1602 8.7987 23 1 2.4491 2.1750 7.4893 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6054 -0.2617 -2.1369 28 1 1.7517 -1.7715 -1.2056 29 1 3.8654 -2.4130 -0.2025 30 1 6.3189 -2.2490 -0.3139 31 1 8.0420 -0.7663 -2.2687 32 1 5.9678 1.3812 -2.5417 33 1 3.5150 1.2091 -2.4274 34 1 1.8762 -2.6150 0.3648 35 1 1.9053 -2.5655 2.1440 36 1 0.4384 -2.0742 1.2640 37 1 1.9298 1.0870 2.3125 38 1 0.5722 -0.0345 2.5726 39 1 2.0978 -1.6140 3.7241 40 1 3.4553 -0.4925 3.4641 41 1 3.7570 -1.4486 7.0077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126190342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:36 Heat of formation + Delta-G solvation = -46.747444 kcal Electronic energy + Delta-G solvation = -19889.610328 eV Core-core repulsion = 16961.335579 eV Total energy + Delta-G solvation = -2928.274749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.77257 -39.49112 -37.58312 -35.45779 -33.66677 -31.82879 -31.36108 -30.34353 -27.68260 -26.95854 -25.67584 -23.62371 -22.88298 -21.89301 -20.34825 -19.27546 -18.61542 -17.07125 -16.88909 -16.55964 -16.20546 -16.11972 -15.86114 -15.37559 -14.88908 -14.44962 -14.35334 -14.06437 -13.93397 -13.51458 -13.31793 -13.12780 -12.92319 -12.87254 -12.75841 -12.57790 -12.30492 -12.23810 -11.81479 -11.71788 -11.57214 -11.30569 -11.24591 -11.18540 -10.52667 -9.80065 -9.25453 -8.97965 -8.19494 -6.30822 0.41173 0.54695 1.38723 1.42286 1.50076 2.40095 2.81342 3.13696 3.18658 3.39360 3.91277 4.02829 4.14125 4.17121 4.25474 4.45824 4.47576 4.50696 4.58905 4.61065 4.73124 4.77762 4.87112 4.90924 4.99384 5.03260 5.07150 5.16744 5.22862 5.26917 5.37236 5.47418 5.50942 5.58729 5.70618 5.79589 5.84736 6.06376 6.15268 6.39149 6.45775 6.86943 6.93052 7.38180 8.92460 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.004904 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.335893 B = 5708.835237 C = 6683.005519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.071 0.929 4 C -0.066 4.066 5 C -0.079 4.079 6 C -0.088 4.088 7 C -0.165 4.165 8 C 0.083 3.917 9 O -0.514 6.514 10 C -0.155 4.155 11 C -0.107 4.107 12 N -0.541 5.541 13 C 0.023 3.977 14 C 0.083 3.917 15 C 0.039 3.961 16 C -0.545 4.545 17 H 0.058 0.942 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.268 1.268 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.406 0.594 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.023 0.977 39 H -0.005 1.005 40 H -0.015 1.015 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 0.468 -20.634 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.089 0.911 4 C -0.103 4.103 5 C -0.079 4.079 6 C -0.107 4.107 7 C -0.183 4.183 8 C 0.039 3.961 9 O -0.327 6.327 10 C -0.174 4.174 11 C -0.125 4.125 12 N -0.264 5.264 13 C -0.125 4.125 14 C -0.045 4.045 15 C 0.001 3.999 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.789 3.211 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.264 0.736 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.014 0.986 40 H 0.003 0.997 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.544 0.664 -20.034 20.053 hybrid contribution -0.506 -0.081 1.027 1.147 sum -1.050 0.583 -19.008 19.046 Atomic orbital electron populations 1.22401 0.96457 1.02512 1.02491 1.21785 0.93183 0.97906 0.89741 0.91055 1.20720 0.90353 1.02023 0.97237 1.19927 0.96298 0.94639 0.97066 1.21015 0.92763 0.99615 0.97257 1.21557 0.95848 0.98977 1.01932 1.18617 0.83142 0.95006 0.99338 1.84795 1.16686 1.79762 1.51413 1.21551 0.94305 0.99913 1.01593 1.21181 0.94212 0.97814 0.99250 1.62182 1.59744 1.02582 1.01931 1.22440 0.97867 0.90160 1.02026 1.21886 0.96452 0.96698 0.89419 1.18894 0.94230 0.94883 0.91879 1.21613 1.26798 1.16328 0.93596 0.92349 1.25952 0.94830 0.96025 1.02789 1.70107 1.31597 1.29076 1.26447 0.85514 0.78744 0.78843 0.78022 1.18986 1.20787 1.19294 0.93926 0.89887 0.91961 0.88001 0.90176 0.86105 0.85908 0.73574 0.84191 0.83545 0.89637 0.93819 0.95008 0.92943 0.95871 0.98644 0.99679 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.12 8.50 71.98 0.61 -3.51 16 2 C 0.08 2.17 2.33 44.91 0.10 2.28 16 3 H 0.07 2.01 8.03 -2.38 -0.02 1.99 16 4 C -0.07 -1.38 4.63 29.85 0.14 -1.24 16 5 C -0.08 -1.96 4.95 -19.85 -0.10 -2.06 16 6 C -0.09 -2.49 9.30 22.26 0.21 -2.28 16 7 C -0.16 -4.70 9.99 22.37 0.22 -4.48 16 8 C 0.08 2.22 6.70 22.50 0.15 2.37 16 9 O -0.51 -12.29 13.50 -92.42 -1.25 -13.54 16 10 C -0.16 -3.68 9.99 22.36 0.22 -3.45 16 11 C -0.11 -2.40 9.69 22.25 0.22 -2.18 16 12 N -0.54 -18.99 4.13 -897.05 -3.70 -22.69 16 13 C 0.02 0.74 8.41 127.69 1.07 1.81 16 14 C 0.08 3.59 4.34 86.30 0.37 3.96 16 15 C 0.04 2.12 4.90 29.85 0.15 2.27 16 16 C -0.54 -31.99 9.11 25.60 0.23 -31.75 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 0.11 5.46 84.65 0.46 0.58 16 19 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 20 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H 0.04 1.13 6.75 -2.39 -0.02 1.12 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.38 6.38 -2.39 -0.02 1.36 16 27 H 0.10 1.54 8.09 -2.39 -0.02 1.52 16 28 H 0.08 1.59 6.12 -2.38 -0.01 1.57 16 29 H 0.12 3.41 6.69 -2.91 -0.02 3.39 16 30 H 0.12 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.41 5.10 9.06 -74.06 -0.67 4.43 16 32 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.09 2.24 5.10 -2.39 -0.01 2.22 16 35 H 0.04 1.69 6.30 -2.39 -0.02 1.67 16 36 H 0.03 0.95 6.28 -2.38 -0.01 0.94 16 37 H 0.05 2.29 8.00 -2.39 -0.02 2.27 16 38 H 0.02 0.98 6.94 -2.39 -0.02 0.96 16 39 H 0.00 -0.28 6.47 -2.39 -0.02 -0.29 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -71.31 326.81 1.78 -69.53 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.35 Total: 15.25 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 4.07 Total: -37.69 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -3.42 Total: -80.85 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.25 Total: -13.54 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.31 1.78 -69.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126190342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.784 kcal (2) G-P(sol) polarization free energy of solvation -71.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds