Wall clock time and date at job start Mon Mar 30 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47265 * 2 1 4 4 C 1.53006 * 109.47322 * 239.99829 * 2 1 3 5 5 O 1.42900 * 109.47155 * 119.99810 * 2 1 3 6 6 C 1.42903 * 113.99771 * 60.00243 * 5 2 1 7 7 C 1.52999 * 109.47044 * 180.02562 * 6 5 2 8 8 N 1.46495 * 109.47495 * 64.99963 * 7 6 5 9 9 C 1.38856 * 120.00242 * 179.97438 * 8 7 6 10 10 C 1.39569 * 119.83969 * 359.72860 * 9 8 7 11 11 C 1.36337 * 120.15826 * 179.71856 * 10 9 8 12 12 C 1.40889 * 119.83550 * 0.55096 * 11 10 9 13 13 C 1.41136 * 120.15484 * 179.70496 * 12 11 10 14 14 H 1.08001 * 120.00078 * 204.62917 * 13 12 11 15 15 C 1.39868 * 120.00297 * 24.61945 * 13 12 11 16 16 N 1.30900 * 119.99549 * 17.96677 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 197.95894 * 15 13 12 18 18 H 1.48498 * 109.47024 * 90.00065 * 17 15 13 19 19 H 1.48499 * 109.47253 * 210.00337 * 17 15 13 20 20 H 1.48507 * 109.46929 * 330.00396 * 17 15 13 21 21 C 1.40885 * 119.69046 * 359.71617 * 12 11 10 22 22 C 1.36339 * 119.83736 * 0.02562 * 21 12 11 23 23 H 1.08992 * 109.47283 * 300.00270 * 1 2 3 24 24 H 1.09013 * 109.46704 * 60.00189 * 1 2 3 25 25 H 1.08994 * 109.47267 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47192 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47288 * 299.99757 * 3 2 1 28 28 H 1.09000 * 109.46625 * 59.99914 * 3 2 1 29 29 H 1.09002 * 109.47355 * 300.00198 * 4 2 1 30 30 H 1.08997 * 109.46998 * 60.00386 * 4 2 1 31 31 H 1.09006 * 109.46927 * 180.02562 * 4 2 1 32 32 H 1.09003 * 109.47499 * 59.99808 * 6 5 2 33 33 H 1.09004 * 109.47035 * 300.00201 * 6 5 2 34 34 H 1.08994 * 109.47013 * 304.99427 * 7 6 5 35 35 H 1.09004 * 109.47110 * 184.99781 * 7 6 5 36 36 H 0.97000 * 119.99819 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.91755 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.08098 * 180.27178 * 11 10 9 39 39 H 0.97000 * 119.99705 * 180.02562 * 16 15 13 40 40 H 1.08004 * 120.08111 * 179.97438 * 21 12 11 41 41 H 1.08002 * 119.92155 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2645 7 6 2.1494 -2.6536 2.5450 8 7 1.5663 -1.9829 3.7096 9 6 1.9296 -2.3754 4.9910 10 6 2.8464 -3.4131 5.1657 11 6 3.2121 -3.7998 6.4209 12 6 2.6533 -3.1570 7.5432 13 6 3.0223 -3.5562 8.8456 14 1 2.3530 -3.3795 9.6746 15 6 4.2548 -4.1807 9.0629 16 7 5.2032 -4.0869 8.1656 17 14 4.5475 -5.1486 10.6336 18 1 4.1481 -6.5635 10.4248 19 1 5.9875 -5.0882 10.9912 20 1 3.7393 -4.5633 11.7335 21 6 1.7241 -2.1141 7.3592 22 6 1.3717 -1.7342 6.0981 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7490 -1.2493 30 1 1.6767 -0.2075 -2.1392 31 1 3.1301 -0.7217 -1.2490 32 1 1.9491 -2.5916 0.4007 33 1 0.4957 -2.0778 1.2907 34 1 3.2325 -2.5319 2.5602 35 1 1.9027 -3.7149 2.5757 36 1 0.9263 -1.2647 3.5855 37 1 3.2703 -3.9081 4.3045 38 1 3.9250 -4.6000 6.5546 39 1 6.0578 -4.5204 8.3160 40 1 1.2915 -1.6172 8.2150 41 1 0.6592 -0.9352 5.9555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132961209.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:54 Heat of formation + Delta-G solvation = -52.612343 kcal Electronic energy + Delta-G solvation = -19365.549834 eV Core-core repulsion = 16437.020764 eV Total energy + Delta-G solvation = -2928.529071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19494 -39.57006 -36.83660 -35.10136 -33.99363 -31.37636 -31.26396 -29.31098 -28.28071 -28.17095 -25.99359 -23.99630 -22.62282 -21.64018 -20.84354 -19.14023 -17.95677 -17.52996 -16.93938 -16.67048 -16.09751 -15.74026 -15.43189 -15.03936 -14.73516 -14.47452 -14.23614 -14.04066 -13.88319 -13.57009 -13.23269 -13.10928 -12.85328 -12.78309 -12.74268 -12.63889 -12.55398 -12.30158 -12.23568 -12.09332 -11.56172 -11.34698 -11.17109 -11.05651 -10.43332 -10.28624 -9.39843 -8.53677 -8.14374 -5.99361 1.11736 1.19423 1.40697 1.53620 1.60116 2.28473 2.69929 2.85625 2.95658 3.85954 3.86295 3.94079 4.10834 4.17694 4.26924 4.42571 4.46211 4.51968 4.60490 4.66554 4.72343 4.81596 4.87976 4.94411 4.95475 5.02847 5.04700 5.15553 5.18312 5.29032 5.36625 5.38518 5.46931 5.69807 5.81075 5.97462 6.19828 6.38056 6.41502 6.68635 6.88574 7.09591 7.16252 7.33136 8.49899 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.045990 B = 0.003332 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.684318 B = 8401.691459 C = 8607.579338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 C -0.138 4.138 4 C -0.175 4.175 5 O -0.396 6.396 6 C 0.057 3.943 7 C 0.136 3.864 8 N -0.746 5.746 9 C 0.112 3.888 10 C -0.177 4.177 11 C -0.143 4.143 12 C 0.034 3.966 13 C -0.506 4.506 14 H 0.068 0.932 15 C 0.031 3.969 16 N -0.843 5.843 17 Si 0.978 3.022 18 H -0.264 1.264 19 H -0.271 1.271 20 H -0.261 1.261 21 C -0.194 4.194 22 C -0.168 4.168 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.395 0.605 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.282 0.718 40 H 0.097 0.903 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 5.001 -17.862 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.056 3.944 3 C -0.195 4.195 4 C -0.232 4.232 5 O -0.317 6.317 6 C -0.019 4.019 7 C 0.011 3.989 8 N -0.381 5.381 9 C 0.012 3.988 10 C -0.199 4.199 11 C -0.163 4.163 12 C 0.031 3.969 13 C -0.538 4.538 14 H 0.086 0.914 15 C -0.181 4.181 16 N -0.471 5.471 17 Si 0.800 3.200 18 H -0.189 1.189 19 H -0.196 1.196 20 H -0.185 1.185 21 C -0.215 4.215 22 C -0.190 4.190 23 H 0.074 0.926 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.230 0.770 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.269 4.913 -17.899 19.591 hybrid contribution 0.121 -0.279 0.703 0.766 sum -6.148 4.634 -17.197 18.842 Atomic orbital electron populations 1.22405 0.94827 1.02808 1.03214 1.21734 0.93934 0.93423 0.85265 1.21784 1.01458 0.93292 1.02952 1.22407 1.01764 1.01269 0.97805 1.88046 1.74962 1.24379 1.44302 1.22714 0.99279 0.83290 0.96628 1.21208 0.97270 0.96073 0.84359 1.43839 1.51136 1.42051 1.01123 1.17503 0.98491 0.97414 0.85351 1.20250 1.02182 1.00778 0.96674 1.20867 1.02283 1.01146 0.91982 1.17817 0.93244 0.91898 0.93926 1.19594 1.02579 1.37131 0.94448 0.91408 1.26632 0.94648 0.95348 1.01471 1.69929 1.03996 1.36069 1.37090 0.85269 0.77986 0.78904 0.77850 1.18896 1.19564 1.18475 1.20754 1.04774 0.99996 0.95930 1.20095 1.04340 1.02856 0.91703 0.92587 0.89859 0.91942 0.92734 0.89029 0.92807 0.91788 0.89841 0.92498 0.90220 0.91580 0.94266 0.91360 0.77041 0.87686 0.88239 0.90784 0.88494 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.25 71.98 0.59 -2.03 16 2 C 0.10 1.71 1.14 -10.79 -0.01 1.70 16 3 C -0.14 -2.32 8.84 71.98 0.64 -1.68 16 4 C -0.18 -2.52 8.25 71.98 0.59 -1.92 16 5 O -0.40 -9.91 9.93 -148.98 -1.48 -11.39 16 6 C 0.06 1.26 5.27 71.98 0.38 1.64 16 7 C 0.14 3.99 5.28 86.38 0.46 4.44 16 8 N -0.75 -26.21 5.65 -339.00 -1.91 -28.13 16 9 C 0.11 5.00 6.67 38.67 0.26 5.25 16 10 C -0.18 -8.60 9.23 22.15 0.20 -8.39 16 11 C -0.14 -7.94 8.64 22.48 0.19 -7.75 16 12 C 0.03 1.95 5.57 -21.27 -0.12 1.83 16 13 C -0.51 -29.13 9.03 23.38 0.21 -28.92 16 14 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 15 C 0.03 1.65 5.13 85.23 0.44 2.09 16 16 N -0.84 -47.09 10.96 21.82 0.24 -46.85 16 17 Si 0.98 40.91 29.60 68.60 2.03 42.95 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 C -0.19 -10.08 9.74 22.47 0.22 -9.86 16 22 C -0.17 -7.70 9.82 22.15 0.22 -7.48 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.06 0.89 6.54 -2.39 -0.02 0.88 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.86 6.54 -2.39 -0.02 0.84 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.08 1.42 6.42 -2.39 -0.02 1.41 16 33 H 0.07 1.30 6.42 -2.38 -0.02 1.29 16 34 H 0.04 1.29 7.94 -2.39 -0.02 1.27 16 35 H 0.07 1.92 7.91 -2.38 -0.02 1.90 16 36 H 0.40 12.60 8.47 -92.71 -0.79 11.82 16 37 H 0.11 4.61 6.68 -2.91 -0.02 4.59 16 38 H 0.10 5.80 6.16 -2.91 -0.02 5.78 16 39 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 40 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -64.91 330.71 3.37 -61.54 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.22 Total: 32.95 kcal Atomic # 6 Polarization: -55.34 SS G_CDS: 4.27 Total: -51.07 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.67 Total: -74.97 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -1.48 Total: -11.39 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.95 kcal Total: -64.91 3.37 -61.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132961209.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.928 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds