Wall clock time and date at job start Mon Mar 30 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46625 * 2 1 4 4 H 1.08994 * 109.47490 * 302.44112 * 3 2 1 5 5 C 1.52998 * 109.46865 * 182.43431 * 3 2 1 6 6 C 1.53003 * 109.47313 * 175.00293 * 5 3 2 7 7 O 1.42893 * 109.47564 * 180.02562 * 6 5 3 8 8 N 1.46905 * 109.46795 * 62.44248 * 3 2 1 9 9 C 1.46898 * 111.00277 * 64.28679 * 8 3 2 10 10 H 1.08996 * 109.47140 * 354.36413 * 9 8 3 11 11 C 1.50700 * 109.47262 * 114.36134 * 9 8 3 12 12 H 1.08004 * 119.99871 * 33.41507 * 11 9 8 13 13 C 1.37876 * 120.00289 * 213.41113 * 11 9 8 14 14 N 1.31511 * 119.99711 * 5.50975 * 13 11 9 15 15 Si 1.86796 * 120.00119 * 185.51019 * 13 11 9 16 16 H 1.48494 * 109.47387 * 89.99840 * 15 13 11 17 17 H 1.48502 * 109.46938 * 210.00105 * 15 13 11 18 18 H 1.48506 * 109.47106 * 329.99702 * 15 13 11 19 19 C 1.50697 * 109.47153 * 234.36486 * 9 8 3 20 20 C 1.38242 * 119.99853 * 314.07165 * 19 9 8 21 21 C 1.38233 * 119.99992 * 179.78354 * 20 19 9 22 22 C 1.38238 * 119.99947 * 0.45351 * 21 20 19 23 23 C 1.38233 * 120.00121 * 359.79888 * 22 21 20 24 24 C 1.38237 * 119.99987 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47361 * 294.78792 * 1 2 3 26 26 H 1.09003 * 109.47383 * 54.79755 * 1 2 3 27 27 H 1.09004 * 109.46797 * 174.79099 * 1 2 3 28 28 H 1.08997 * 109.47015 * 240.00795 * 2 1 3 29 29 H 1.09001 * 109.47342 * 120.00005 * 2 1 3 30 30 H 1.08997 * 109.47943 * 295.00443 * 5 3 2 31 31 H 1.09003 * 109.46981 * 55.00670 * 5 3 2 32 32 H 1.09004 * 109.46881 * 300.00520 * 6 5 3 33 33 H 1.09003 * 109.46789 * 60.00260 * 6 5 3 34 34 H 0.96703 * 114.00360 * 179.97438 * 7 6 5 35 35 H 1.00903 * 110.99857 * 188.24124 * 8 3 2 36 36 H 0.97000 * 119.99774 * 180.02562 * 14 13 11 37 37 H 1.07993 * 120.00003 * 0.02562 * 20 19 9 38 38 H 1.07997 * 120.00195 * 180.26872 * 21 20 19 39 39 H 1.07999 * 120.00307 * 179.83255 * 22 21 20 40 40 H 1.07998 * 120.00478 * 180.02562 * 23 22 21 41 41 H 1.07996 * 120.00302 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6413 1.9689 -0.8672 5 6 3.5687 1.4431 -0.0613 6 6 4.0736 2.8819 -0.1869 7 8 5.5014 2.8824 -0.2447 8 7 1.5989 2.1177 1.2279 9 6 2.2002 1.4963 2.4154 10 1 2.7601 0.6099 2.1175 11 6 3.1306 2.4783 3.0796 12 1 2.9058 3.5344 3.0583 13 6 4.2688 2.0285 3.7146 14 7 4.5997 0.7574 3.6486 15 14 5.3406 3.2244 4.6687 16 1 4.8785 3.2870 6.0785 17 1 6.7517 2.7635 4.6302 18 1 5.2436 4.5735 4.0556 19 6 1.1127 1.1024 3.3814 20 6 0.0944 1.9901 3.6753 21 6 -0.9056 1.6271 4.5579 22 6 -0.8824 0.3800 5.1538 23 6 0.1386 -0.5057 4.8640 24 6 1.1361 -0.1445 3.9778 25 1 -0.3634 0.4308 0.9329 26 1 -0.3634 0.5924 -0.8397 27 1 -0.3633 -1.0235 -0.0933 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9690 0.9957 0.8485 31 1 3.8978 0.8658 -0.9253 32 1 3.6733 3.3293 -1.0967 33 1 3.7445 3.4592 0.6772 34 1 5.8915 3.7635 -0.3253 35 1 1.8060 3.1046 1.1922 36 1 5.4003 0.4408 4.0957 37 1 0.0782 2.9656 3.2123 38 1 -1.7034 2.3189 4.7841 39 1 -1.6622 0.0974 5.8455 40 1 0.1566 -1.4801 5.3292 41 1 1.9336 -0.8365 3.7510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134390494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:25 Heat of formation + Delta-G solvation = -39.157859 kcal Electronic energy + Delta-G solvation = -21020.881951 eV Core-core repulsion = 18092.936310 eV Total energy + Delta-G solvation = -2927.945640 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.64436 -37.37252 -35.73351 -33.31423 -31.38030 -30.61714 -29.89931 -28.81177 -26.24412 -24.58219 -23.02758 -21.49008 -21.19273 -20.42968 -18.54440 -17.14998 -16.64138 -16.04648 -15.19089 -14.81462 -14.25975 -14.02179 -13.94302 -13.51164 -13.13695 -12.92390 -12.69296 -12.44470 -12.33428 -11.81063 -11.68606 -11.40664 -11.19760 -11.01760 -10.77270 -10.71314 -10.50789 -10.33533 -10.15153 -10.08389 -10.05889 -9.75219 -9.28949 -9.15485 -8.56372 -7.94492 -7.57874 -7.28434 -6.14416 -4.20017 2.39706 2.45903 3.25312 3.32395 3.33166 4.33773 4.74064 4.85706 5.22968 5.34209 5.54540 5.67041 5.73633 5.79023 5.84332 5.89825 5.94560 6.00506 6.07734 6.23612 6.36115 6.41064 6.49148 6.52844 6.53254 6.65458 6.78943 6.85016 6.94381 6.96773 7.13252 7.16446 7.32043 7.41076 7.58238 7.71609 7.81465 7.93919 8.11393 8.16691 8.24832 8.65701 8.92586 9.46095 10.90967 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.010067 C = 0.006736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.731618 B = 2780.781947 C = 4155.905313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.100 3.900 4 H 0.061 0.939 5 C -0.155 4.155 6 C 0.082 3.918 7 O -0.572 6.572 8 N -0.684 5.684 9 C 0.224 3.776 10 H 0.075 0.925 11 C -0.530 4.530 12 H 0.057 0.943 13 C 0.080 3.920 14 N -0.877 5.877 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.006 4.006 20 C -0.104 4.104 21 C -0.136 4.136 22 C -0.157 4.157 23 C -0.131 4.131 24 C -0.119 4.119 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.367 0.633 35 H 0.331 0.669 36 H 0.264 0.736 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 1.046 -4.761 7.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.151 4.151 3 C -0.011 4.011 4 H 0.079 0.921 5 C -0.194 4.194 6 C 0.005 3.995 7 O -0.376 6.376 8 N -0.313 5.313 9 C 0.117 3.883 10 H 0.093 0.907 11 C -0.568 4.568 12 H 0.075 0.925 13 C -0.125 4.125 14 N -0.513 5.513 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.007 4.007 20 C -0.123 4.123 21 C -0.154 4.154 22 C -0.175 4.175 23 C -0.149 4.149 24 C -0.138 4.138 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.212 0.788 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.987 -0.108 -4.617 7.562 hybrid contribution 1.698 1.571 0.692 2.415 sum -4.289 1.463 -3.925 5.995 Atomic orbital electron populations 1.21587 0.95758 0.99592 1.02372 1.21533 0.96170 0.96024 1.01334 1.21374 0.91096 0.95129 0.93480 0.92065 1.22322 0.97389 0.95700 1.03964 1.22193 0.80135 0.98587 0.98613 1.86510 1.20947 1.32905 1.97228 1.60829 1.62091 1.06595 1.01823 1.18443 0.87821 0.96980 0.85080 0.90702 1.21348 1.05732 0.92874 1.36877 0.92522 1.24871 0.96998 0.95094 0.95585 1.69849 1.25474 1.13920 1.42090 0.86649 0.79742 0.81359 0.80569 1.20695 1.21224 1.19989 1.20547 0.93357 0.91136 0.95689 1.20844 0.94340 0.99555 0.97545 1.20964 0.99191 0.96359 0.98870 1.20755 0.99411 0.95150 1.02206 1.20939 0.95740 0.98817 0.99400 1.21051 0.97739 0.97194 0.97819 0.91278 0.93937 0.94449 0.93157 0.91380 0.87906 0.93309 0.95870 0.92069 0.78790 0.85075 0.92597 0.87074 0.87946 0.88052 0.87885 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.71 37.16 0.36 -1.78 16 2 C -0.11 -1.91 5.28 -26.73 -0.14 -2.05 16 3 C 0.10 1.74 2.54 -67.71 -0.17 1.57 16 4 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.15 -2.96 4.76 -26.73 -0.13 -3.08 16 6 C 0.08 1.47 6.82 37.16 0.25 1.72 16 7 O -0.57 -10.61 13.66 -35.23 -0.48 -11.09 16 8 N -0.68 -12.99 5.15 -102.18 -0.53 -13.52 16 9 C 0.22 4.97 1.17 -70.02 -0.08 4.89 16 10 H 0.08 1.85 3.70 -51.93 -0.19 1.66 16 11 C -0.53 -13.03 6.95 -34.44 -0.24 -13.27 16 12 H 0.06 1.40 7.66 -52.48 -0.40 1.00 16 13 C 0.08 2.06 5.45 -17.82 -0.10 1.96 16 14 N -0.88 -23.55 12.79 55.43 0.71 -22.84 16 15 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.01 -0.13 4.93 -104.62 -0.52 -0.64 16 20 C -0.10 -2.13 9.27 -39.58 -0.37 -2.49 16 21 C -0.14 -2.50 10.05 -39.58 -0.40 -2.89 16 22 C -0.16 -2.82 10.05 -39.58 -0.40 -3.22 16 23 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 24 C -0.12 -2.58 9.67 -39.58 -0.38 -2.96 16 25 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.32 6.49 -51.93 -0.34 0.98 16 30 H 0.10 2.41 6.05 -51.93 -0.31 2.10 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 1.17 5.94 -51.93 -0.31 0.86 16 34 H 0.37 4.95 9.12 45.56 0.42 5.36 16 35 H 0.33 6.27 6.76 -39.29 -0.27 6.00 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.11 2.19 7.90 -52.49 -0.41 1.78 16 38 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.11 2.57 8.00 -52.49 -0.42 2.15 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -27.26 329.91 -8.64 -35.89 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -5.58 Total: 16.00 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -2.70 Total: -25.14 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.18 Total: -36.35 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.48 Total: -11.09 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.26 -8.64 -35.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134390494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.266 kcal (2) G-P(sol) polarization free energy of solvation -27.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds