Wall clock time and date at job start Mon Mar 30 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46625 * 2 1 4 4 H 1.08994 * 109.47490 * 302.44112 * 3 2 1 5 5 C 1.52998 * 109.46865 * 182.43431 * 3 2 1 6 6 C 1.53003 * 109.47313 * 175.00293 * 5 3 2 7 7 O 1.42893 * 109.47564 * 180.02562 * 6 5 3 8 8 N 1.46905 * 109.46795 * 62.44248 * 3 2 1 9 9 C 1.46898 * 111.00277 * 64.28679 * 8 3 2 10 10 H 1.08996 * 109.47140 * 354.36413 * 9 8 3 11 11 C 1.50700 * 109.47262 * 114.36134 * 9 8 3 12 12 H 1.08004 * 119.99871 * 33.41507 * 11 9 8 13 13 C 1.37876 * 120.00289 * 213.41113 * 11 9 8 14 14 N 1.31511 * 119.99711 * 5.50975 * 13 11 9 15 15 Si 1.86796 * 120.00119 * 185.51019 * 13 11 9 16 16 H 1.48494 * 109.47387 * 89.99840 * 15 13 11 17 17 H 1.48502 * 109.46938 * 210.00105 * 15 13 11 18 18 H 1.48506 * 109.47106 * 329.99702 * 15 13 11 19 19 C 1.50697 * 109.47153 * 234.36486 * 9 8 3 20 20 C 1.38242 * 119.99853 * 314.07165 * 19 9 8 21 21 C 1.38233 * 119.99992 * 179.78354 * 20 19 9 22 22 C 1.38238 * 119.99947 * 0.45351 * 21 20 19 23 23 C 1.38233 * 120.00121 * 359.79888 * 22 21 20 24 24 C 1.38237 * 119.99987 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47361 * 294.78792 * 1 2 3 26 26 H 1.09003 * 109.47383 * 54.79755 * 1 2 3 27 27 H 1.09004 * 109.46797 * 174.79099 * 1 2 3 28 28 H 1.08997 * 109.47015 * 240.00795 * 2 1 3 29 29 H 1.09001 * 109.47342 * 120.00005 * 2 1 3 30 30 H 1.08997 * 109.47943 * 295.00443 * 5 3 2 31 31 H 1.09003 * 109.46981 * 55.00670 * 5 3 2 32 32 H 1.09004 * 109.46881 * 300.00520 * 6 5 3 33 33 H 1.09003 * 109.46789 * 60.00260 * 6 5 3 34 34 H 0.96703 * 114.00360 * 179.97438 * 7 6 5 35 35 H 1.00903 * 110.99857 * 188.24124 * 8 3 2 36 36 H 0.97000 * 119.99774 * 180.02562 * 14 13 11 37 37 H 1.07993 * 120.00003 * 0.02562 * 20 19 9 38 38 H 1.07997 * 120.00195 * 180.26872 * 21 20 19 39 39 H 1.07999 * 120.00307 * 179.83255 * 22 21 20 40 40 H 1.07998 * 120.00478 * 180.02562 * 23 22 21 41 41 H 1.07996 * 120.00302 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6413 1.9689 -0.8672 5 6 3.5687 1.4431 -0.0613 6 6 4.0736 2.8819 -0.1869 7 8 5.5014 2.8824 -0.2447 8 7 1.5989 2.1177 1.2279 9 6 2.2002 1.4963 2.4154 10 1 2.7601 0.6099 2.1175 11 6 3.1306 2.4783 3.0796 12 1 2.9058 3.5344 3.0583 13 6 4.2688 2.0285 3.7146 14 7 4.5997 0.7574 3.6486 15 14 5.3406 3.2244 4.6687 16 1 4.8785 3.2870 6.0785 17 1 6.7517 2.7635 4.6302 18 1 5.2436 4.5735 4.0556 19 6 1.1127 1.1024 3.3814 20 6 0.0944 1.9901 3.6753 21 6 -0.9056 1.6271 4.5579 22 6 -0.8824 0.3800 5.1538 23 6 0.1386 -0.5057 4.8640 24 6 1.1361 -0.1445 3.9778 25 1 -0.3634 0.4308 0.9329 26 1 -0.3634 0.5924 -0.8397 27 1 -0.3633 -1.0235 -0.0933 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9690 0.9957 0.8485 31 1 3.8978 0.8658 -0.9253 32 1 3.6733 3.3293 -1.0967 33 1 3.7445 3.4592 0.6772 34 1 5.8915 3.7635 -0.3253 35 1 1.8060 3.1046 1.1922 36 1 5.4003 0.4408 4.0957 37 1 0.0782 2.9656 3.2123 38 1 -1.7034 2.3189 4.7841 39 1 -1.6622 0.0974 5.8455 40 1 0.1566 -1.4801 5.3292 41 1 1.9336 -0.8365 3.7510 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134390494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:25 Heat of formation + Delta-G solvation = -56.386882 kcal Electronic energy + Delta-G solvation = -21021.629057 eV Core-core repulsion = 18092.936310 eV Total energy + Delta-G solvation = -2928.692747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20405 -38.86110 -37.19321 -35.07374 -33.08123 -32.06135 -31.43241 -30.34343 -28.02044 -26.03736 -24.74741 -23.03257 -22.61251 -21.96841 -20.08787 -18.90709 -18.15332 -17.58406 -16.73786 -16.67368 -15.77668 -15.56196 -15.52889 -14.99024 -14.59395 -14.50345 -14.15928 -13.99834 -13.84983 -13.39345 -13.20441 -13.09871 -12.85977 -12.83876 -12.43641 -12.15572 -12.07028 -11.93118 -11.71674 -11.62034 -11.54172 -11.34641 -10.83619 -10.72621 -10.52925 -9.48827 -9.16380 -8.90207 -8.08904 -6.19060 0.84064 0.92568 1.36868 1.39660 1.45310 2.40946 3.15629 3.35920 3.43240 3.83151 4.14222 4.23707 4.35191 4.37965 4.43663 4.50009 4.54665 4.56529 4.68192 4.78269 4.87804 4.98372 5.00302 5.07344 5.12681 5.22851 5.29424 5.36260 5.42059 5.54429 5.58614 5.63620 5.68201 5.70964 5.88520 6.03004 6.12984 6.24172 6.46780 6.57492 6.97275 6.99090 7.10752 7.48921 8.93491 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.010067 C = 0.006736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.731618 B = 2780.781947 C = 4155.905313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 C 0.103 3.897 4 H 0.090 0.910 5 C -0.150 4.150 6 C 0.086 3.914 7 O -0.595 6.595 8 N -0.673 5.673 9 C 0.238 3.762 10 H 0.045 0.955 11 C -0.524 4.524 12 H 0.053 0.947 13 C 0.035 3.965 14 N -0.905 5.905 15 Si 0.934 3.066 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.265 1.265 19 C -0.028 4.028 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.151 4.151 23 C -0.133 4.133 24 C -0.144 4.144 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.388 0.612 35 H 0.332 0.668 36 H 0.258 0.742 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 2.161 -5.163 9.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C -0.007 4.007 4 H 0.108 0.892 5 C -0.189 4.189 6 C 0.008 3.992 7 O -0.403 6.403 8 N -0.302 5.302 9 C 0.130 3.870 10 H 0.063 0.937 11 C -0.563 4.563 12 H 0.071 0.929 13 C -0.166 4.166 14 N -0.544 5.544 15 Si 0.762 3.238 16 H -0.211 1.211 17 H -0.218 1.218 18 H -0.189 1.189 19 C -0.029 4.029 20 C -0.136 4.136 21 C -0.149 4.149 22 C -0.169 4.169 23 C -0.151 4.151 24 C -0.163 4.163 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.236 0.764 35 H 0.150 0.850 36 H 0.067 0.933 37 H 0.132 0.868 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.023 1.037 -5.028 9.525 hybrid contribution 2.277 1.207 0.791 2.696 sum -5.746 2.244 -4.237 7.483 Atomic orbital electron populations 1.21490 0.94417 1.00545 1.01909 1.21506 0.97248 0.95573 1.00499 1.21471 0.90072 0.95629 0.93577 0.89174 1.22238 0.98463 0.96503 1.01703 1.22141 0.80054 0.97457 0.99508 1.86459 1.21404 1.35117 1.97291 1.60815 1.61347 1.06544 1.01542 1.18115 0.87612 0.95298 0.86020 0.93696 1.21591 1.05823 0.93092 1.35757 0.92857 1.25448 0.98370 0.96034 0.96763 1.69987 1.25732 1.15233 1.43411 0.85924 0.78173 0.80388 0.79335 1.21101 1.21842 1.18883 1.20538 0.94262 0.91908 0.96191 1.20954 0.94686 0.99402 0.98519 1.21349 0.99051 0.97099 0.97421 1.21177 0.99418 0.94452 1.01870 1.21216 0.95203 1.00199 0.98531 1.21016 0.98428 0.97203 0.99686 0.93547 0.91935 0.93311 0.91388 0.94829 0.92745 0.92699 0.92382 0.93709 0.76370 0.84971 0.93308 0.86823 0.84591 0.84331 0.85706 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.71 71.98 0.70 -3.11 16 2 C -0.11 -3.73 5.28 30.60 0.16 -3.57 16 3 C 0.10 3.52 2.54 44.91 0.11 3.64 16 4 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 5 C -0.15 -5.77 4.76 30.59 0.15 -5.62 16 6 C 0.09 2.99 6.82 71.98 0.49 3.48 16 7 O -0.60 -21.76 13.66 -148.98 -2.03 -23.79 16 8 N -0.67 -25.56 5.15 -477.19 -2.46 -28.02 16 9 C 0.24 10.88 1.17 43.42 0.05 10.93 16 10 H 0.05 2.36 3.70 -2.39 -0.01 2.35 16 11 C -0.52 -26.37 6.95 25.60 0.18 -26.19 16 12 H 0.05 2.66 7.66 -2.91 -0.02 2.64 16 13 C 0.04 1.88 5.45 84.65 0.46 2.34 16 14 N -0.91 -51.04 12.79 21.45 0.27 -50.77 16 15 Si 0.93 43.30 29.54 68.60 2.03 45.33 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 C -0.03 -1.23 4.93 -19.86 -0.10 -1.33 16 20 C -0.12 -4.65 9.27 22.27 0.21 -4.45 16 21 C -0.13 -4.46 10.05 22.27 0.22 -4.23 16 22 C -0.15 -4.97 10.05 22.27 0.22 -4.75 16 23 C -0.13 -4.96 10.05 22.27 0.22 -4.73 16 24 C -0.14 -6.42 9.67 22.27 0.22 -6.21 16 25 H 0.05 1.61 7.83 -2.39 -0.02 1.59 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.03 1.36 6.49 -2.39 -0.02 1.35 16 30 H 0.05 2.67 6.05 -2.39 -0.01 2.66 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.04 1.70 5.94 -2.39 -0.01 1.68 16 34 H 0.39 10.03 9.12 -74.06 -0.68 9.35 16 35 H 0.33 12.40 6.76 -89.69 -0.61 11.80 16 36 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 37 H 0.11 4.36 7.90 -2.91 -0.02 4.34 16 38 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 41 H 0.09 4.27 8.00 -2.91 -0.02 4.25 16 Total: -1.00 -60.70 329.91 0.84 -59.86 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -0.26 Total: 41.19 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 3.30 Total: -43.79 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.18 Total: -78.78 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -2.03 Total: -23.79 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -60.70 0.84 -59.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134390494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.470 kcal (2) G-P(sol) polarization free energy of solvation -60.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds