Wall clock time and date at job start Mon Mar 30 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47305 * 2 1 4 4 C 1.52992 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47096 * 55.00341 * 4 3 2 6 6 O 1.42898 * 109.47655 * 295.00370 * 4 3 2 7 7 C 1.52999 * 109.47127 * 174.99808 * 4 3 2 8 8 N 1.46901 * 109.46996 * 185.00031 * 7 4 3 9 9 C 1.46910 * 111.00035 * 179.97438 * 8 7 4 10 10 H 1.08996 * 109.46878 * 325.00068 * 9 8 7 11 11 C 1.50698 * 109.46912 * 84.99919 * 9 8 7 12 12 H 1.07999 * 120.00075 * 234.79924 * 11 9 8 13 13 C 1.37881 * 119.99574 * 54.80031 * 11 9 8 14 14 N 1.31507 * 120.00369 * 2.51351 * 13 11 9 15 15 Si 1.86803 * 119.99812 * 182.51235 * 13 11 9 16 16 H 1.48500 * 109.47177 * 89.99984 * 15 13 11 17 17 H 1.48499 * 109.47190 * 210.00395 * 15 13 11 18 18 H 1.48499 * 109.46995 * 329.99978 * 15 13 11 19 19 C 1.50691 * 109.47170 * 205.00169 * 9 8 7 20 20 C 1.38239 * 120.00282 * 150.22940 * 19 9 8 21 21 C 1.38232 * 120.00305 * 179.78532 * 20 19 9 22 22 C 1.38226 * 120.00034 * 0.44859 * 21 20 19 23 23 C 1.38239 * 120.00253 * 359.80445 * 22 21 20 24 24 C 1.38236 * 120.00301 * 330.50659 * 19 9 8 25 25 H 1.09001 * 109.47455 * 300.00264 * 1 2 3 26 26 H 1.09004 * 109.46708 * 60.00074 * 1 2 3 27 27 H 1.09005 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46708 * 119.99926 * 2 1 3 29 29 H 1.08998 * 109.46962 * 239.99736 * 2 1 3 30 30 H 1.08999 * 109.47051 * 300.00357 * 3 2 1 31 31 H 1.09001 * 109.47079 * 59.99506 * 3 2 1 32 32 H 0.96704 * 113.99209 * 300.00260 * 6 4 3 33 33 H 1.08999 * 109.47550 * 305.00042 * 7 4 3 34 34 H 1.08995 * 109.47291 * 65.00358 * 7 4 3 35 35 H 1.00896 * 111.00689 * 303.95760 * 8 7 4 36 36 H 0.97006 * 120.00399 * 179.97438 * 14 13 11 37 37 H 1.08007 * 119.99230 * 0.02562 * 20 19 9 38 38 H 1.08001 * 119.99843 * 180.27725 * 21 20 19 39 39 H 1.08003 * 120.00348 * 179.83618 * 22 21 20 40 40 H 1.08002 * 120.00298 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00085 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 8 4.0459 0.8732 1.2219 7 6 4.0800 2.8794 -0.1251 8 7 5.5441 2.8706 -0.2449 9 6 6.0705 4.2365 -0.3685 10 1 5.3696 4.8457 -0.9391 11 6 6.2510 4.8314 1.0043 12 1 5.7842 5.7738 1.2501 13 6 7.0121 4.1724 1.9464 14 7 7.6210 3.0500 1.6319 15 14 7.1785 4.8741 3.6697 16 1 6.0949 4.3352 4.5303 17 1 8.4969 4.4906 4.2352 18 1 7.0759 6.3545 3.6133 19 6 7.3989 4.2006 -1.0791 20 6 7.8016 5.2775 -1.8466 21 6 9.0221 5.2463 -2.4949 22 6 9.8359 4.1346 -2.3831 23 6 9.4310 3.0555 -1.6198 24 6 8.2123 3.0884 -0.9680 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.7602 1.3477 2.0145 33 1 3.6458 3.3429 -1.0109 34 1 3.7914 3.4462 0.7600 35 1 5.9678 2.3885 0.5336 36 1 8.1568 2.5866 2.2947 37 1 7.1642 6.1448 -1.9367 38 1 9.3386 6.0895 -3.0909 39 1 10.7883 4.1091 -2.8917 40 1 10.0670 2.1870 -1.5321 41 1 7.8960 2.2454 -0.3717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134406597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:08 Heat of formation + Delta-G solvation = -43.200743 kcal Electronic energy + Delta-G solvation = -20164.544972 eV Core-core repulsion = 17236.424019 eV Total energy + Delta-G solvation = -2928.120953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.30119 -37.64509 -35.07335 -33.87190 -31.97978 -30.48400 -29.66031 -28.68948 -26.54867 -24.53865 -22.52098 -21.48809 -20.94987 -20.68566 -19.72269 -16.55990 -16.13938 -15.80650 -15.54471 -14.93449 -14.39793 -14.21332 -13.83207 -13.59404 -13.33217 -13.13757 -12.62696 -12.23193 -12.16809 -11.93628 -11.70119 -11.47915 -11.41478 -11.27906 -11.03178 -10.88237 -10.73962 -10.54163 -10.39485 -10.25459 -10.01655 -9.68332 -9.49027 -9.23793 -8.67996 -7.74720 -7.37934 -6.99647 -6.02616 -4.30553 2.57672 2.69375 3.19342 3.28531 3.30971 4.29091 4.72907 4.97988 5.05086 5.14393 5.15925 5.18742 5.51975 5.61762 5.72322 5.87285 5.89773 5.93784 5.99444 6.03087 6.08913 6.13248 6.23167 6.32075 6.43362 6.47059 6.50644 6.76263 6.79284 6.90717 6.96862 7.21659 7.35614 7.59116 7.66781 7.83957 8.01260 8.09636 8.17239 8.31339 8.44348 8.85195 9.17863 9.42786 10.81980 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.006175 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.444233 B = 4533.454205 C = 5587.508929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.150 4.150 4 C 0.108 3.892 5 H 0.098 0.902 6 O -0.557 6.557 7 C 0.037 3.963 8 N -0.686 5.686 9 C 0.237 3.763 10 H 0.032 0.968 11 C -0.543 4.543 12 H 0.056 0.944 13 C 0.073 3.927 14 N -0.872 5.872 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.284 1.284 18 H -0.275 1.275 19 C -0.017 4.017 20 C -0.136 4.136 21 C -0.145 4.145 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.051 4.051 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.368 0.632 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.373 0.627 36 H 0.267 0.733 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.031 -3.164 -3.180 8.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.188 4.188 4 C 0.049 3.951 5 H 0.116 0.884 6 O -0.362 6.362 7 C -0.094 4.094 8 N -0.324 5.324 9 C 0.128 3.872 10 H 0.051 0.949 11 C -0.582 4.582 12 H 0.074 0.926 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.019 4.019 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.172 4.172 23 C -0.167 4.167 24 C -0.069 4.069 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.214 0.786 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.199 0.801 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.634 -3.863 -4.164 8.733 hybrid contribution -0.059 1.400 2.289 2.683 sum -6.692 -2.463 -1.875 7.374 Atomic orbital electron populations 1.21795 0.96482 1.01157 1.01491 1.21455 0.94937 0.96949 1.02444 1.22307 0.97150 0.97014 1.02343 1.22031 0.90751 0.94849 0.87509 0.88410 1.86572 1.77344 1.56714 1.15535 1.22383 0.92794 0.94754 0.99437 1.60902 1.01561 1.18315 1.51645 1.18083 0.88893 0.87062 0.93130 0.94948 1.21685 1.32127 1.07808 0.96597 0.92603 1.24991 0.94133 0.95076 0.98840 1.69598 1.31129 1.16275 1.33995 0.86586 0.77570 0.79465 0.84364 1.20630 1.21002 1.20044 1.20176 0.98144 0.92073 0.91465 1.20836 0.96640 0.98562 0.99461 1.20732 0.95604 0.97845 1.02108 1.20756 0.99174 0.95158 1.02107 1.21099 0.97923 0.97953 0.99677 1.21347 0.91921 0.99570 0.94106 0.93006 0.93011 0.93106 0.91500 0.92192 0.91386 0.92040 0.78610 0.92591 0.95686 0.80069 0.92224 0.87985 0.88203 0.88383 0.88145 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.12 -1.42 5.83 -26.73 -0.16 -1.57 16 3 C -0.15 -1.93 4.89 -26.74 -0.13 -2.06 16 4 C 0.11 1.75 3.20 -26.74 -0.09 1.66 16 5 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 6 O -0.56 -9.73 12.39 -35.23 -0.44 -10.16 16 7 C 0.04 0.71 5.15 -3.82 -0.02 0.69 16 8 N -0.69 -15.49 5.39 -109.19 -0.59 -16.08 16 9 C 0.24 5.72 2.50 -70.02 -0.18 5.55 16 10 H 0.03 0.77 7.74 -51.93 -0.40 0.37 16 11 C -0.54 -14.07 8.63 -34.44 -0.30 -14.37 16 12 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 13 C 0.07 1.88 5.06 -17.82 -0.09 1.79 16 14 N -0.87 -22.43 7.97 55.43 0.44 -21.99 16 15 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 C -0.02 -0.42 4.79 -104.63 -0.50 -0.92 16 20 C -0.14 -3.00 9.70 -39.58 -0.38 -3.38 16 21 C -0.14 -2.89 10.05 -39.59 -0.40 -3.29 16 22 C -0.15 -3.04 10.05 -39.59 -0.40 -3.44 16 23 C -0.15 -3.15 10.05 -39.58 -0.40 -3.55 16 24 C -0.05 -1.20 7.66 -39.58 -0.30 -1.51 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.37 5.57 9.05 45.56 0.41 5.98 16 33 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 34 H 0.03 0.50 8.00 -51.93 -0.42 0.09 16 35 H 0.37 9.09 5.09 -39.29 -0.20 8.89 16 36 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 37 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 41 H 0.14 3.62 5.59 -52.49 -0.29 3.33 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -26.77 330.79 -9.51 -36.28 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -5.92 Total: 17.14 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -2.97 Total: -25.55 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.15 Total: -38.07 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.44 Total: -10.16 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.77 -9.51 -36.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134406597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.922 kcal (2) G-P(sol) polarization free energy of solvation -26.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds