Wall clock time and date at job start Mon Mar 30 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47305 * 2 1 4 4 C 1.52992 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47096 * 55.00341 * 4 3 2 6 6 O 1.42898 * 109.47655 * 295.00370 * 4 3 2 7 7 C 1.52999 * 109.47127 * 174.99808 * 4 3 2 8 8 N 1.46901 * 109.46996 * 185.00031 * 7 4 3 9 9 C 1.46910 * 111.00035 * 179.97438 * 8 7 4 10 10 H 1.08996 * 109.46878 * 325.00068 * 9 8 7 11 11 C 1.50698 * 109.46912 * 84.99919 * 9 8 7 12 12 H 1.07999 * 120.00075 * 234.79924 * 11 9 8 13 13 C 1.37881 * 119.99574 * 54.80031 * 11 9 8 14 14 N 1.31507 * 120.00369 * 2.51351 * 13 11 9 15 15 Si 1.86803 * 119.99812 * 182.51235 * 13 11 9 16 16 H 1.48500 * 109.47177 * 89.99984 * 15 13 11 17 17 H 1.48499 * 109.47190 * 210.00395 * 15 13 11 18 18 H 1.48499 * 109.46995 * 329.99978 * 15 13 11 19 19 C 1.50691 * 109.47170 * 205.00169 * 9 8 7 20 20 C 1.38239 * 120.00282 * 150.22940 * 19 9 8 21 21 C 1.38232 * 120.00305 * 179.78532 * 20 19 9 22 22 C 1.38226 * 120.00034 * 0.44859 * 21 20 19 23 23 C 1.38239 * 120.00253 * 359.80445 * 22 21 20 24 24 C 1.38236 * 120.00301 * 330.50659 * 19 9 8 25 25 H 1.09001 * 109.47455 * 300.00264 * 1 2 3 26 26 H 1.09004 * 109.46708 * 60.00074 * 1 2 3 27 27 H 1.09005 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46708 * 119.99926 * 2 1 3 29 29 H 1.08998 * 109.46962 * 239.99736 * 2 1 3 30 30 H 1.08999 * 109.47051 * 300.00357 * 3 2 1 31 31 H 1.09001 * 109.47079 * 59.99506 * 3 2 1 32 32 H 0.96704 * 113.99209 * 300.00260 * 6 4 3 33 33 H 1.08999 * 109.47550 * 305.00042 * 7 4 3 34 34 H 1.08995 * 109.47291 * 65.00358 * 7 4 3 35 35 H 1.00896 * 111.00689 * 303.95760 * 8 7 4 36 36 H 0.97006 * 120.00399 * 179.97438 * 14 13 11 37 37 H 1.08007 * 119.99230 * 0.02562 * 20 19 9 38 38 H 1.08001 * 119.99843 * 180.27725 * 21 20 19 39 39 H 1.08003 * 120.00348 * 179.83618 * 22 21 20 40 40 H 1.08002 * 120.00298 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00085 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 8 4.0459 0.8732 1.2219 7 6 4.0800 2.8794 -0.1251 8 7 5.5441 2.8706 -0.2449 9 6 6.0705 4.2365 -0.3685 10 1 5.3696 4.8457 -0.9391 11 6 6.2510 4.8314 1.0043 12 1 5.7842 5.7738 1.2501 13 6 7.0121 4.1724 1.9464 14 7 7.6210 3.0500 1.6319 15 14 7.1785 4.8741 3.6697 16 1 6.0949 4.3352 4.5303 17 1 8.4969 4.4906 4.2352 18 1 7.0759 6.3545 3.6133 19 6 7.3989 4.2006 -1.0791 20 6 7.8016 5.2775 -1.8466 21 6 9.0221 5.2463 -2.4949 22 6 9.8359 4.1346 -2.3831 23 6 9.4310 3.0555 -1.6198 24 6 8.2123 3.0884 -0.9680 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.7602 1.3477 2.0145 33 1 3.6458 3.3429 -1.0109 34 1 3.7914 3.4462 0.7600 35 1 5.9678 2.3885 0.5336 36 1 8.1568 2.5866 2.2947 37 1 7.1642 6.1448 -1.9367 38 1 9.3386 6.0895 -3.0909 39 1 10.7883 4.1091 -2.8917 40 1 10.0670 2.1870 -1.5321 41 1 7.8960 2.2454 -0.3717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134406597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:08 Heat of formation + Delta-G solvation = -58.687700 kcal Electronic energy + Delta-G solvation = -20165.216537 eV Core-core repulsion = 17236.424019 eV Total energy + Delta-G solvation = -2928.792518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95324 -39.03905 -36.76633 -34.95505 -33.80599 -32.12241 -31.31059 -30.03477 -28.26508 -26.00801 -24.19924 -23.04193 -22.20028 -22.02717 -21.44272 -18.46084 -17.72113 -17.10685 -17.02680 -16.65718 -15.90751 -15.63836 -15.44570 -15.04425 -14.78301 -14.45975 -14.08701 -13.84126 -13.71277 -13.49097 -13.24410 -12.94554 -12.84691 -12.67478 -12.54851 -12.53560 -12.16692 -12.03280 -11.79363 -11.59884 -11.49504 -11.40673 -11.25135 -10.73357 -10.49200 -9.42359 -9.10358 -8.80112 -7.93573 -6.30782 0.88937 1.03513 1.36417 1.40631 1.47543 2.38556 3.08882 3.39186 3.48822 3.78406 4.12484 4.17838 4.26148 4.37935 4.40238 4.45884 4.55226 4.60751 4.72348 4.76988 4.84425 4.90465 4.96167 4.97981 5.07050 5.16889 5.24214 5.26723 5.28308 5.47310 5.50810 5.53633 5.64540 5.70802 5.92899 6.08294 6.10994 6.37855 6.52982 6.61618 6.88330 6.99512 7.27736 7.46286 8.85053 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.006175 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.444233 B = 4533.454205 C = 5587.508929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.140 4.140 4 C 0.116 3.884 5 H 0.088 0.912 6 O -0.573 6.573 7 C 0.037 3.963 8 N -0.690 5.690 9 C 0.236 3.764 10 H 0.024 0.976 11 C -0.562 4.562 12 H 0.042 0.958 13 C 0.041 3.959 14 N -0.879 5.879 15 Si 0.944 3.056 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.280 1.280 19 C -0.044 4.044 20 C -0.153 4.153 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.156 4.156 24 C -0.071 4.071 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.376 0.624 33 H 0.063 0.937 34 H 0.012 0.988 35 H 0.362 0.638 36 H 0.265 0.735 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.842 -3.015 -3.744 8.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.178 4.178 4 C 0.057 3.943 5 H 0.106 0.894 6 O -0.379 6.379 7 C -0.093 4.093 8 N -0.326 5.326 9 C 0.127 3.873 10 H 0.042 0.958 11 C -0.601 4.601 12 H 0.060 0.940 13 C -0.162 4.162 14 N -0.516 5.516 15 Si 0.771 3.229 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.206 1.206 19 C -0.045 4.045 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.167 4.167 23 C -0.174 4.174 24 C -0.090 4.090 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.224 0.776 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.187 0.813 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.463 -3.715 -4.737 8.832 hybrid contribution -0.079 1.367 2.403 2.766 sum -6.542 -2.348 -2.334 7.331 Atomic orbital electron populations 1.21759 0.94730 1.02044 1.02011 1.21422 0.96422 0.95763 1.01944 1.22204 0.94241 0.98206 1.03127 1.21946 0.92983 0.92508 0.86848 0.89391 1.86539 1.77964 1.57106 1.16278 1.22493 0.91020 0.96702 0.99101 1.60913 1.03370 1.17358 1.50989 1.18045 0.89345 0.87515 0.92379 0.95761 1.21802 1.32733 1.07560 0.98024 0.93961 1.25490 0.93975 0.95418 1.01295 1.69744 1.30917 1.16561 1.34382 0.85790 0.77472 0.78439 0.81247 1.19845 1.21069 1.20570 1.20278 0.98211 0.93158 0.92860 1.21076 0.97969 0.98334 0.99769 1.21144 0.94464 0.99004 1.01270 1.21177 1.00389 0.94115 1.01032 1.21374 0.97238 0.99405 0.99405 1.21221 0.93354 0.99103 0.95299 0.92655 0.92324 0.92091 0.92435 0.92330 0.90360 0.91450 0.77620 0.91875 0.96960 0.81306 0.92472 0.87265 0.84672 0.84631 0.86231 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.91 71.98 0.71 -1.93 16 2 C -0.12 -2.63 5.83 30.59 0.18 -2.45 16 3 C -0.14 -3.46 4.89 30.59 0.15 -3.31 16 4 C 0.12 3.79 3.20 30.59 0.10 3.89 16 5 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 6 O -0.57 -20.22 12.39 -148.98 -1.85 -22.07 16 7 C 0.04 1.45 5.15 86.30 0.44 1.89 16 8 N -0.69 -32.10 5.39 -499.36 -2.69 -34.79 16 9 C 0.24 11.73 2.50 43.42 0.11 11.84 16 10 H 0.02 1.19 7.74 -2.39 -0.02 1.17 16 11 C -0.56 -29.82 8.63 25.60 0.22 -29.60 16 12 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 13 C 0.04 2.12 5.06 84.66 0.43 2.55 16 14 N -0.88 -45.94 7.97 21.45 0.17 -45.77 16 15 Si 0.94 42.15 29.54 68.60 2.03 44.18 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 C -0.04 -2.13 4.79 -19.87 -0.10 -2.23 16 20 C -0.15 -6.63 9.70 22.27 0.22 -6.41 16 21 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 22 C -0.15 -5.46 10.05 22.27 0.22 -5.24 16 23 C -0.16 -6.43 10.05 22.27 0.22 -6.21 16 24 C -0.07 -3.39 7.66 22.27 0.17 -3.22 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.06 1.39 7.82 -2.38 -0.02 1.37 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.38 11.53 9.05 -74.05 -0.67 10.86 16 33 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 34 H 0.01 0.50 8.00 -2.39 -0.02 0.48 16 35 H 0.36 18.23 5.09 -89.70 -0.46 17.77 16 36 H 0.27 13.47 8.31 -92.70 -0.77 12.70 16 37 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 39 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 40 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.12 6.33 5.59 -2.91 -0.02 6.31 16 Total: -1.00 -57.36 330.79 0.84 -56.52 By element: Atomic # 1 Polarization: 47.53 SS G_CDS: -0.12 Total: 47.41 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.30 Total: -45.48 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -2.52 Total: -80.56 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.85 Total: -22.07 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -57.36 0.84 -56.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134406597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.172 kcal (2) G-P(sol) polarization free energy of solvation -57.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds