Wall clock time and date at job start Mon Mar 30 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47029 * 2 1 4 4 H 1.08994 * 109.47177 * 55.00249 * 3 2 1 5 5 O 1.42901 * 109.47292 * 295.00356 * 3 2 1 6 6 C 1.53004 * 109.46942 * 175.00525 * 3 2 1 7 7 C 1.53008 * 109.46901 * 185.00132 * 6 3 2 8 8 N 1.46899 * 109.47015 * 179.97438 * 7 6 3 9 9 C 1.46897 * 111.00246 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46996 * 34.99398 * 9 8 7 11 11 C 1.50701 * 109.46952 * 275.00308 * 9 8 7 12 12 H 1.08004 * 120.00058 * 324.77799 * 11 9 8 13 13 C 1.37875 * 120.00298 * 144.78196 * 11 9 8 14 14 N 1.31516 * 119.99927 * 5.08520 * 13 11 9 15 15 Si 1.86801 * 120.00340 * 185.09177 * 13 11 9 16 16 H 1.48505 * 109.46998 * 59.99264 * 15 13 11 17 17 H 1.48497 * 109.47281 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46914 * 299.99779 * 15 13 11 19 19 C 1.50694 * 109.47334 * 154.99972 * 9 8 7 20 20 C 1.38227 * 120.00322 * 45.17693 * 19 9 8 21 21 C 1.38230 * 120.00301 * 179.80916 * 20 19 9 22 22 C 1.38240 * 120.00010 * 0.39808 * 21 20 19 23 23 C 1.38233 * 119.99587 * 359.85726 * 22 21 20 24 24 C 1.38234 * 120.00278 * 359.95432 * 23 22 21 25 25 H 1.09004 * 109.46937 * 299.99437 * 1 2 3 26 26 H 1.08997 * 109.47447 * 59.99887 * 1 2 3 27 27 H 1.08997 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46937 * 240.00563 * 2 1 3 29 29 H 1.08997 * 109.47447 * 120.00113 * 2 1 3 30 30 H 0.96704 * 113.99687 * 299.99785 * 5 3 2 31 31 H 1.08995 * 109.47156 * 65.00249 * 6 3 2 32 32 H 1.08996 * 109.46946 * 304.99346 * 6 3 2 33 33 H 1.08995 * 109.47119 * 60.00095 * 7 6 3 34 34 H 1.09006 * 109.46959 * 299.99846 * 7 6 3 35 35 H 1.00896 * 111.00127 * 56.04542 * 8 7 6 36 36 H 0.97001 * 120.00296 * 180.02562 * 14 13 11 37 37 H 1.08004 * 119.99837 * 0.02562 * 20 19 9 38 38 H 1.08005 * 120.00014 * 180.23121 * 21 20 19 39 39 H 1.07994 * 120.00096 * 179.82991 * 22 21 20 40 40 H 1.07998 * 119.99737 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.00310 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4443 0.1256 7 6 4.0645 2.8850 0.2510 8 7 5.5285 2.8868 0.3722 9 6 6.0451 4.2565 0.4943 10 1 5.3392 4.8616 1.0634 11 6 6.2226 4.8506 -0.8792 12 1 6.5381 4.2253 -1.7014 13 6 5.9825 6.1924 -1.0863 14 7 5.6960 6.9739 -0.0681 15 14 6.0639 6.9003 -2.8130 16 1 5.0640 6.2196 -3.6747 17 1 5.7680 8.3547 -2.7662 18 1 7.4237 6.6890 -3.3710 19 6 7.3730 4.2310 1.2062 20 6 8.3283 3.2960 0.8539 21 6 9.5479 3.2752 1.5042 22 6 9.8092 4.1841 2.5125 23 6 8.8519 5.1156 2.8684 24 6 7.6337 5.1390 2.2154 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0141 1.6543 -2.0139 31 1 4.0029 0.9836 -0.7598 32 1 3.8571 0.8801 1.0112 33 1 3.6265 3.3457 1.1364 34 1 3.7722 3.4494 -0.6346 35 1 5.9563 2.4073 -0.4057 36 1 5.5266 7.9179 -0.2137 37 1 8.1230 2.5840 0.0682 38 1 10.2956 2.5470 1.2264 39 1 10.7610 4.1660 3.0224 40 1 9.0559 5.8254 3.6564 41 1 6.8860 5.8671 2.4931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135040661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:40 Heat of formation + Delta-G solvation = -68.564807 kcal Electronic energy + Delta-G solvation = -19691.600577 eV Core-core repulsion = 16762.379756 eV Total energy + Delta-G solvation = -2929.220821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97648 -39.13784 -37.08332 -34.59322 -33.70585 -32.64144 -31.49372 -30.45538 -28.05973 -25.96852 -24.33075 -23.20134 -22.24809 -22.21745 -21.41508 -18.77104 -17.56903 -17.21562 -16.84080 -16.70431 -16.19229 -15.82444 -15.54710 -15.27733 -14.79093 -14.48955 -14.15277 -13.99340 -13.68240 -13.49379 -13.28994 -13.07341 -13.00778 -12.77512 -12.76816 -12.33008 -12.19876 -11.92670 -11.80508 -11.77061 -11.58748 -11.52822 -11.34590 -10.74589 -10.55797 -9.53759 -9.30764 -9.03897 -8.12643 -6.32405 0.78976 0.86118 1.35996 1.37229 1.43834 2.35875 3.06734 3.26438 3.44093 3.71341 3.97872 4.11178 4.25183 4.29222 4.33277 4.35498 4.48126 4.55466 4.69290 4.70395 4.81662 4.89671 4.93484 5.02718 5.05923 5.11329 5.13932 5.20681 5.33761 5.42074 5.43514 5.46237 5.50826 5.62648 5.83384 5.91668 6.00402 6.19931 6.33783 6.47346 6.85391 6.91504 6.93419 7.37121 8.85700 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.005803 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.711742 B = 4823.536276 C = 6252.946330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.108 3.892 4 H 0.082 0.918 5 O -0.580 6.580 6 C -0.132 4.132 7 C 0.078 3.922 8 N -0.680 5.680 9 C 0.237 3.763 10 H 0.027 0.973 11 C -0.545 4.545 12 H 0.055 0.945 13 C 0.024 3.976 14 N -0.911 5.911 15 Si 0.949 3.051 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.036 4.036 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.149 4.149 23 C -0.131 4.131 24 C -0.141 4.141 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.384 0.616 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.010 0.990 35 H 0.329 0.671 36 H 0.263 0.737 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 -12.432 1.171 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.049 3.951 4 H 0.100 0.900 5 O -0.387 6.387 6 C -0.170 4.170 7 C -0.052 4.052 8 N -0.309 5.309 9 C 0.128 3.872 10 H 0.045 0.955 11 C -0.583 4.583 12 H 0.073 0.927 13 C -0.178 4.178 14 N -0.548 5.548 15 Si 0.774 3.226 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.037 4.037 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.167 4.167 23 C -0.149 4.149 24 C -0.159 4.159 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.232 0.768 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.028 0.972 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.132 0.868 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.045 -11.957 2.325 12.352 hybrid contribution -0.004 1.124 -2.064 2.350 sum -2.049 -10.833 0.261 11.028 Atomic orbital electron populations 1.21702 0.95183 1.01913 1.01747 1.22158 0.96928 0.95632 1.03659 1.21952 0.92638 0.93600 0.86956 0.89968 1.86571 1.77054 1.58485 1.16571 1.22183 0.95916 0.95528 1.03347 1.21603 0.88577 0.96761 0.98252 1.60952 1.04899 1.17530 1.47500 1.18067 0.89834 0.85810 0.93444 0.95528 1.21833 1.46792 0.94780 0.94944 0.92732 1.25701 0.94213 0.97682 1.00171 1.70034 1.47571 1.05487 1.31748 0.85754 0.78713 0.77282 0.80814 1.19624 1.21039 1.19647 1.20403 0.97693 0.93184 0.92431 1.20939 0.93885 0.98996 1.00478 1.21364 0.96690 0.99737 0.96757 1.21250 0.99814 0.96506 0.99098 1.21266 0.93529 0.99717 1.00398 1.21030 0.98013 0.99271 0.97631 0.93238 0.93057 0.91515 0.90575 0.90130 0.76779 0.90886 0.89999 0.94440 0.97190 0.85418 0.92838 0.86761 0.84024 0.83772 0.85200 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.81 71.98 0.71 -1.96 16 2 C -0.15 -2.70 5.61 30.59 0.17 -2.53 16 3 C 0.11 2.71 2.97 30.59 0.09 2.81 16 4 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 5 O -0.58 -16.32 12.41 -148.98 -1.85 -18.16 16 6 C -0.13 -3.67 5.15 30.60 0.16 -3.51 16 7 C 0.08 3.06 5.38 86.31 0.46 3.52 16 8 N -0.68 -28.71 5.82 -499.35 -2.91 -31.62 16 9 C 0.24 11.97 2.26 43.42 0.10 12.07 16 10 H 0.03 1.56 6.84 -2.39 -0.02 1.54 16 11 C -0.54 -29.41 8.07 25.60 0.21 -29.20 16 12 H 0.05 2.89 7.76 -2.91 -0.02 2.87 16 13 C 0.02 1.31 5.45 84.65 0.46 1.77 16 14 N -0.91 -53.08 12.84 21.45 0.28 -52.81 16 15 Si 0.95 43.98 29.54 68.60 2.03 46.00 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 C -0.04 -1.70 4.93 -19.87 -0.10 -1.79 16 20 C -0.12 -5.07 9.28 22.27 0.21 -4.87 16 21 C -0.13 -4.35 10.05 22.27 0.22 -4.13 16 22 C -0.15 -4.90 10.05 22.27 0.22 -4.68 16 23 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 24 C -0.14 -6.50 9.67 22.27 0.22 -6.28 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.38 8.07 9.05 -74.05 -0.67 7.40 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.04 1.59 8.06 -2.39 -0.02 1.57 16 34 H 0.01 0.44 7.68 -2.38 -0.02 0.42 16 35 H 0.33 13.13 7.86 -89.70 -0.71 12.43 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.11 4.39 7.43 -2.91 -0.02 4.37 16 38 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 40 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 41 H 0.09 4.57 8.00 -2.91 -0.02 4.54 16 Total: -1.00 -64.00 340.62 0.53 -63.48 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.37 Total: 36.62 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 3.35 Total: -43.51 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -2.63 Total: -84.43 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.85 Total: -18.16 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.00 0.53 -63.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135040661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.088 kcal (2) G-P(sol) polarization free energy of solvation -64.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds