Wall clock time and date at job start Mon Mar 30 2020 07:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 O 1.42893 * 109.47239 * 120.00262 * 2 1 3 5 5 C 1.42895 * 114.00397 * 89.99937 * 4 2 1 6 6 C 1.52999 * 109.47486 * 179.97438 * 5 4 2 7 7 N 1.46897 * 109.46854 * 65.00087 * 6 5 4 8 8 C 1.46897 * 111.00187 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47168 * 324.28793 * 8 7 6 10 10 C 1.50706 * 109.46926 * 84.28533 * 8 7 6 11 11 H 1.08003 * 119.99676 * 60.78514 * 10 8 7 12 12 C 1.37875 * 120.00046 * 240.77983 * 10 8 7 13 13 N 1.31520 * 119.99975 * 174.87100 * 12 10 8 14 14 Si 1.86795 * 120.00122 * 354.87023 * 12 10 8 15 15 H 1.48501 * 109.47184 * 84.75316 * 14 12 10 16 16 H 1.48502 * 109.47297 * 204.75117 * 14 12 10 17 17 H 1.48500 * 109.47359 * 324.75276 * 14 12 10 18 18 C 1.50704 * 109.47527 * 204.28757 * 8 7 6 19 19 C 1.38240 * 119.99794 * 133.72203 * 18 8 7 20 20 C 1.38230 * 119.99447 * 179.97438 * 19 18 8 21 21 C 1.38236 * 120.00451 * 359.95989 * 20 19 18 22 22 C 1.38234 * 119.99821 * 359.97438 * 21 20 19 23 23 C 1.38230 * 119.99957 * 313.70016 * 18 8 7 24 24 H 1.08997 * 109.47129 * 59.99760 * 1 2 3 25 25 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47027 * 299.99569 * 1 2 3 27 27 H 1.09003 * 109.46608 * 240.00388 * 2 1 3 28 28 H 1.08997 * 109.47136 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47006 * 300.00598 * 3 2 1 30 30 H 1.09004 * 109.46876 * 59.99970 * 3 2 1 31 31 H 1.08998 * 109.47065 * 59.99692 * 5 4 2 32 32 H 1.09004 * 109.47205 * 300.00294 * 5 4 2 33 33 H 1.08998 * 109.47206 * 305.00005 * 6 5 4 34 34 H 1.08999 * 109.47412 * 184.99753 * 6 5 4 35 35 H 1.00898 * 111.00158 * 303.95697 * 7 6 5 36 36 H 0.96993 * 120.00092 * 179.97438 * 13 12 10 37 37 H 1.07997 * 120.00274 * 359.97438 * 19 18 8 38 38 H 1.08001 * 119.99745 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.00231 * 179.72113 * 21 20 19 40 40 H 1.07996 * 120.00098 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.99951 * 0.02562 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 -2.0782 0.9886 6 6 2.7092 -2.6925 2.2941 7 7 1.6735 -2.5712 3.3287 8 6 2.1278 -3.1523 4.5991 9 1 2.7445 -4.0283 4.3979 10 6 2.9369 -2.1318 5.3574 11 1 2.4842 -1.1980 5.6568 12 6 4.2549 -2.3902 5.6690 13 7 4.9897 -1.4613 6.2408 14 14 4.9969 -4.0595 5.2791 15 1 5.4697 -4.0745 3.8715 16 1 6.1422 -4.3169 6.1887 17 1 3.9687 -5.1144 5.4672 18 6 0.9323 -3.5580 5.4221 19 6 0.9029 -4.7970 6.0343 20 6 -0.1934 -5.1688 6.7896 21 6 -1.2601 -4.3013 6.9335 22 6 -1.2300 -3.0617 6.3223 23 6 -0.1347 -2.6908 5.5651 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.9320 -2.2466 0.1985 32 1 1.2539 -2.5434 0.7124 33 1 3.6082 -2.1672 2.6165 34 1 2.9413 -3.7454 2.1340 35 1 1.3945 -1.6092 3.4501 36 1 5.9168 -1.6432 6.4604 37 1 1.7365 -5.4745 5.9225 38 1 -0.2166 -6.1370 7.2677 39 1 -2.1186 -4.5936 7.5199 40 1 -2.0635 -2.3841 6.4343 41 1 -0.1117 -1.7228 5.0867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160190199.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:35 Heat of formation + Delta-G solvation = -34.030142 kcal Electronic energy + Delta-G solvation = -19998.331225 eV Core-core repulsion = 17070.607939 eV Total energy + Delta-G solvation = -2927.723286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.61325 -38.12922 -35.57657 -32.99872 -32.01942 -30.75660 -30.13504 -28.00630 -27.12547 -25.83296 -22.75560 -22.01646 -21.20466 -20.98810 -19.69799 -17.17163 -16.61204 -16.18145 -15.34259 -14.92336 -14.77358 -14.30729 -14.19556 -13.72584 -13.36988 -13.07075 -12.75002 -12.63328 -12.35987 -12.20037 -12.11464 -11.94805 -11.88352 -11.49440 -11.23576 -11.17038 -10.93456 -10.68391 -10.53407 -10.42510 -10.06347 -9.82702 -9.38795 -9.24581 -8.69786 -8.17179 -7.88886 -7.25731 -6.20492 -4.21563 2.16023 2.22695 3.17895 3.26091 3.27563 3.97278 4.28327 4.59105 4.98222 5.07755 5.15440 5.24342 5.28447 5.57087 5.59233 5.61451 5.64414 5.73046 5.74622 5.79912 5.87874 5.91417 5.93755 6.11241 6.23899 6.27081 6.31631 6.33955 6.45428 6.53296 6.68506 6.79913 6.89025 7.18953 7.28732 7.43920 7.57052 7.61992 7.81394 8.03230 8.32670 8.58977 8.85739 9.41321 10.92279 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.006985 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.517788 B = 4007.749703 C = 5336.717173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.081 3.919 3 C -0.149 4.149 4 O -0.374 6.374 5 C 0.068 3.932 6 C 0.064 3.936 7 N -0.683 5.683 8 C 0.203 3.797 9 H 0.049 0.951 10 C -0.531 4.531 11 H 0.078 0.922 12 C 0.079 3.921 13 N -0.888 5.888 14 Si 0.871 3.129 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.263 1.263 18 C -0.014 4.014 19 C -0.134 4.134 20 C -0.124 4.124 21 C -0.151 4.151 22 C -0.126 4.126 23 C -0.103 4.103 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.342 0.658 36 H 0.266 0.734 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.024 -1.533 -9.566 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.293 6.293 5 C -0.009 4.009 6 C -0.066 4.066 7 N -0.314 5.314 8 C 0.095 3.905 9 H 0.067 0.933 10 C -0.570 4.570 11 H 0.096 0.904 12 C -0.125 4.125 13 N -0.525 5.525 14 Si 0.698 3.302 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.188 1.188 18 C -0.015 4.015 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.170 4.170 22 C -0.144 4.144 23 C -0.122 4.122 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.160 0.840 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.119 -1.960 -9.527 12.669 hybrid contribution 1.179 -0.320 0.073 1.224 sum -6.940 -2.279 -9.453 11.947 Atomic orbital electron populations 1.22280 0.96302 1.02325 1.02132 1.21995 0.93495 0.93708 0.88507 1.21851 1.01766 0.94884 1.02155 1.88015 1.86291 1.20334 1.34642 1.22644 0.99075 0.81395 0.97815 1.21770 0.95416 0.98791 0.90651 1.61082 1.37766 1.24464 1.08091 1.18645 0.89809 0.95507 0.86538 0.93323 1.21513 0.95381 1.02918 1.37152 0.90419 1.25102 0.96930 0.96389 0.94120 1.69900 1.08156 1.33133 1.41285 0.86984 0.79083 0.85416 0.78724 1.19896 1.21250 1.18818 1.20269 0.94468 0.91815 0.94973 1.20992 0.97945 0.96829 0.99453 1.20924 0.94472 0.99070 0.99727 1.20833 0.98664 0.95132 1.02336 1.21016 0.98369 0.96412 0.98578 1.20850 0.93217 0.99514 0.98574 0.92354 0.92439 0.91658 0.92947 0.92125 0.91832 0.91659 0.94057 0.93096 0.93598 0.91381 0.83964 0.92444 0.87189 0.87351 0.87468 0.87293 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.53 37.16 0.35 -1.65 16 2 C 0.08 1.05 3.34 -26.73 -0.09 0.96 16 3 C -0.15 -1.75 9.56 37.16 0.36 -1.39 16 4 O -0.37 -6.30 9.51 -35.23 -0.33 -6.64 16 5 C 0.07 1.08 6.09 37.16 0.23 1.30 16 6 C 0.06 1.23 5.90 -3.83 -0.02 1.21 16 7 N -0.68 -14.25 5.85 -109.19 -0.64 -14.89 16 8 C 0.20 4.72 2.15 -70.01 -0.15 4.57 16 9 H 0.05 1.16 4.15 -51.93 -0.22 0.94 16 10 C -0.53 -14.45 8.56 -34.44 -0.29 -14.75 16 11 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 12 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 13 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 14 Si 0.87 20.98 27.02 -169.99 -4.59 16.39 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.26 -6.05 6.34 56.52 0.36 -5.70 16 18 C -0.01 -0.31 4.93 -104.62 -0.52 -0.83 16 19 C -0.13 -2.73 9.67 -39.58 -0.38 -3.11 16 20 C -0.12 -2.19 10.05 -39.59 -0.40 -2.59 16 21 C -0.15 -2.54 10.05 -39.58 -0.40 -2.94 16 22 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 23 C -0.10 -2.08 9.27 -39.59 -0.37 -2.45 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.61 7.79 -51.93 -0.40 0.21 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.05 0.76 7.87 -51.93 -0.41 0.35 16 33 H 0.05 1.02 7.97 -51.93 -0.41 0.60 16 34 H 0.07 1.24 8.06 -51.93 -0.42 0.83 16 35 H 0.34 7.40 7.47 -39.29 -0.29 7.10 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.11 2.20 7.64 -52.49 -0.40 1.80 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.12 2.28 7.45 -52.49 -0.39 1.89 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -29.58 337.08 -8.65 -38.23 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.76 Total: 9.82 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.18 Total: -22.15 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.13 Total: -40.73 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.33 Total: -6.64 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.59 Total: 16.39 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.58 -8.65 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160190199.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.200 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds